Wall clock time and date at job start Tue Mar 31 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46958 * 2 1 4 4 N 1.33319 * 126.10757 * 270.13284 * 3 2 1 5 5 C 1.30858 * 109.68188 * 180.28889 * 4 3 2 6 6 N 1.34487 * 109.16429 * 359.75203 * 5 4 3 7 7 H 0.97009 * 126.47424 * 180.02562 * 6 5 4 8 8 C 1.36662 * 126.10434 * 90.00180 * 3 2 1 9 9 C 1.46767 * 126.84681 * 359.97438 * 8 3 2 10 10 O 1.21689 * 119.99656 * 359.43198 * 9 8 3 11 11 N 1.34772 * 120.00132 * 179.71207 * 9 8 3 12 12 C 1.46495 * 119.99981 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47294 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.58191 * 59.77534 * 13 12 11 15 15 C 1.53192 * 109.59041 * 180.02562 * 13 12 11 16 16 C 1.53037 * 109.31428 * 174.42578 * 15 13 12 17 17 C 1.53051 * 109.53609 * 298.63755 * 16 15 13 18 18 C 1.52996 * 109.49311 * 181.31954 * 17 16 15 19 19 C 1.53000 * 109.49408 * 301.37859 * 17 16 15 20 20 C 1.53185 * 109.31170 * 61.36382 * 17 16 15 21 21 N 1.46924 * 109.58706 * 299.35340 * 13 12 11 22 22 C 1.36939 * 120.62870 * 6.61677 * 21 13 12 23 23 H 1.07990 * 120.00351 * 328.83148 * 22 21 13 24 24 C 1.38813 * 119.99471 * 148.84055 * 22 21 13 25 25 N 1.31620 * 119.99879 * 162.47867 * 24 22 21 26 26 Si 1.86801 * 120.00085 * 342.47071 * 24 22 21 27 27 H 1.48499 * 109.47242 * 90.00920 * 26 24 22 28 28 H 1.48504 * 109.47061 * 210.01361 * 26 24 22 29 29 H 1.48498 * 109.47273 * 330.00785 * 26 24 22 30 30 H 1.09004 * 109.46984 * 60.00080 * 1 2 3 31 31 H 1.09005 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47103 * 299.99758 * 1 2 3 33 33 H 1.09004 * 109.47013 * 240.00500 * 2 1 3 34 34 H 1.08996 * 109.47195 * 120.00214 * 2 1 3 35 35 H 1.08004 * 125.41314 * 179.76518 * 5 4 3 36 36 H 0.97000 * 120.00137 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46969 * 299.99850 * 12 11 9 38 38 H 1.09002 * 109.47555 * 59.99911 * 12 11 9 39 39 H 1.09000 * 109.49693 * 294.37883 * 15 13 12 40 40 H 1.08996 * 109.49182 * 54.43849 * 15 13 12 41 41 H 1.09001 * 109.46252 * 58.65203 * 16 15 13 42 42 H 1.08995 * 109.46185 * 178.63087 * 16 15 13 43 43 H 1.08996 * 109.47973 * 60.00014 * 18 17 16 44 44 H 1.09007 * 109.46763 * 179.97438 * 18 17 16 45 45 H 1.09003 * 109.47069 * 299.99211 * 18 17 16 46 46 H 1.09007 * 109.47082 * 60.00503 * 19 17 16 47 47 H 1.08993 * 109.47201 * 179.97438 * 19 17 16 48 48 H 1.08997 * 109.47804 * 300.00304 * 19 17 16 49 49 H 1.09000 * 109.58699 * 65.15301 * 20 17 16 50 50 H 1.09001 * 109.58301 * 185.43333 * 20 17 16 51 51 H 0.97000 * 119.99946 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2918 2.1624 -1.0771 5 6 2.7169 3.3435 -0.7071 6 7 2.7401 3.4034 0.6362 7 1 3.0132 4.1625 1.1750 8 6 2.3008 2.1801 1.1042 9 6 2.1569 1.7746 2.5073 10 8 1.7513 0.6601 2.7800 11 7 2.4686 2.6383 3.4938 12 6 2.3255 2.2333 4.8943 13 6 2.7429 3.3899 5.8049 14 1 2.1109 4.2560 5.6084 15 6 2.5949 2.9690 7.2704 16 6 3.1436 4.0763 8.1730 17 6 4.6307 4.2867 7.8786 18 6 5.1860 5.3710 8.8042 19 6 5.3878 2.9780 8.1134 20 6 4.8017 4.7225 6.4201 21 7 4.1483 3.7344 5.5508 22 6 4.8363 3.1454 4.5236 23 1 4.5968 2.1366 4.2218 24 6 5.8417 3.8451 3.8706 25 7 6.7244 3.1991 3.1385 26 14 5.9417 5.7036 4.0305 27 1 6.7948 6.0552 5.1940 28 1 6.5312 6.2759 2.7934 29 1 4.5784 6.2573 4.2310 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.0032 4.1429 -1.3744 36 1 2.7884 3.5279 3.2764 37 1 1.2861 1.9713 5.0924 38 1 2.9614 1.3699 5.0898 39 1 1.5415 2.8036 7.4968 40 1 3.1528 2.0486 7.4426 41 1 2.6012 5.0024 7.9824 42 1 3.0173 3.7899 9.2170 43 1 5.0616 5.0617 9.8419 44 1 6.2453 5.5201 8.5945 45 1 4.6471 6.3034 8.6358 46 1 4.9926 2.2061 7.4530 47 1 6.4467 3.1281 7.9032 48 1 5.2634 2.6673 9.1507 49 1 4.3399 5.6990 6.2740 50 1 5.8629 4.7803 6.1780 51 1 7.4267 3.6881 2.6819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089725207.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:18 Heat of formation + Delta-G solvation = 29.319380 kcal Electronic energy + Delta-G solvation = -31052.471273 eV Core-core repulsion = 27180.840679 eV Total energy + Delta-G solvation = -3871.630594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.90983 -39.40024 -38.39423 -35.35965 -34.02046 -33.22932 -32.39679 -31.59095 -30.86058 -29.00442 -27.52776 -26.84044 -25.63419 -24.34280 -23.27414 -22.72135 -22.23602 -20.58973 -20.17858 -19.17170 -18.50387 -18.28387 -16.62753 -15.81441 -15.64011 -15.42514 -15.14138 -14.88134 -14.44578 -14.22205 -13.97006 -13.72594 -13.66599 -13.61029 -13.44863 -13.14020 -12.96062 -12.71581 -12.41109 -12.07874 -11.96955 -11.69912 -11.62762 -11.52964 -11.21539 -11.17710 -11.06296 -10.77144 -10.70804 -10.62770 -10.43265 -10.09739 -10.06388 -9.91848 -9.73701 -9.64197 -9.55731 -9.33306 -8.81438 -8.48539 -8.09285 -7.04515 -6.09561 -3.51380 1.68577 3.12293 3.15112 3.22828 3.28078 3.31160 3.67555 3.86615 4.33652 4.65613 4.68703 5.04210 5.14813 5.17755 5.22624 5.27794 5.31748 5.43518 5.49161 5.61895 5.73356 5.74954 5.78239 5.86698 5.90717 5.93460 5.96582 6.05158 6.06738 6.14341 6.20493 6.22768 6.24643 6.27172 6.29678 6.41390 6.44375 6.50398 6.52630 6.56535 6.65405 6.75978 6.79622 6.86509 7.00299 7.03663 7.47272 7.81712 8.01907 8.21389 8.23667 8.71296 8.78071 9.54656 9.94324 11.04361 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.004223 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.485773 B = 6629.399395 C = 7842.739355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C 0.086 3.914 4 N -0.501 5.501 5 C 0.208 3.792 6 N -0.546 5.546 7 H 0.424 0.576 8 C -0.070 4.070 9 C 0.591 3.409 10 O -0.542 6.542 11 N -0.693 5.693 12 C 0.137 3.863 13 C 0.163 3.837 14 H 0.035 0.965 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.085 4.085 18 C -0.139 4.139 19 C -0.127 4.127 20 C 0.139 3.861 21 N -0.601 5.601 22 C -0.262 4.262 23 H 0.094 0.906 24 C 0.029 3.971 25 N -0.899 5.899 26 Si 0.872 3.128 27 H -0.286 1.286 28 H -0.305 1.305 29 H -0.272 1.272 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.210 0.790 36 H 0.404 0.596 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.037 0.963 49 H 0.022 0.978 50 H 0.072 0.928 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 3.144 2.480 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.083 4.083 3 C -0.049 4.049 4 N -0.221 5.221 5 C -0.076 4.076 6 N -0.150 5.150 7 H 0.263 0.737 8 C -0.186 4.186 9 C 0.377 3.623 10 O -0.421 6.421 11 N -0.342 5.342 12 C 0.013 3.987 13 C 0.057 3.943 14 H 0.053 0.947 15 C -0.171 4.171 16 C -0.134 4.134 17 C -0.087 4.087 18 C -0.197 4.197 19 C -0.184 4.184 20 C 0.013 3.987 21 N -0.325 5.325 22 C -0.391 4.391 23 H 0.111 0.889 24 C -0.171 4.171 25 N -0.541 5.541 26 Si 0.702 3.298 27 H -0.213 1.213 28 H -0.234 1.234 29 H -0.197 1.197 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.227 0.773 36 H 0.240 0.760 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.040 0.960 50 H 0.090 0.910 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.099 2.076 1.770 9.499 hybrid contribution 1.028 2.570 1.028 2.953 sum -8.071 4.646 2.798 9.724 Atomic orbital electron populations 1.21599 0.94861 1.01292 1.01522 1.19986 0.95784 0.89094 1.03472 1.20907 1.00392 0.96837 0.86742 1.70049 1.18859 1.02611 1.30604 1.24968 1.02365 0.98037 0.82263 1.43340 1.49157 1.13803 1.08710 0.73680 1.21039 1.14097 0.88079 0.95431 1.16770 0.78000 0.84901 0.82661 1.90754 1.48189 1.20121 1.83033 1.45796 1.65256 1.17283 1.05885 1.21290 0.99611 0.98115 0.79672 1.20753 0.86629 0.94556 0.92404 0.94730 1.21998 0.99791 0.99422 0.95858 1.21420 0.95340 0.98332 0.98313 1.21038 0.94886 0.95806 0.96929 1.21831 1.00745 0.98328 0.98820 1.21723 0.99728 0.97338 0.99661 1.21428 0.97772 0.91301 0.88173 1.44374 1.06239 1.48914 1.32996 1.18990 1.14460 0.97766 1.07843 0.88903 1.25353 0.97528 0.96944 0.97238 1.69822 1.15150 1.34978 1.34116 0.87143 0.78059 0.88599 0.75961 1.21324 1.23362 1.19733 0.93202 0.92578 0.92655 0.91081 0.88794 0.77341 0.76046 0.92174 0.90940 0.92547 0.91073 0.92833 0.92922 0.93159 0.92965 0.93282 0.91080 0.93394 0.94437 0.96015 0.90991 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.89 37.16 0.37 -1.49 16 2 C -0.05 -0.71 5.93 -27.88 -0.17 -0.88 16 3 C 0.09 1.50 6.40 -82.51 -0.53 0.98 16 4 N -0.50 -8.39 11.20 -10.64 -0.12 -8.51 16 5 C 0.21 2.90 13.01 -90.58 -1.18 1.72 16 6 N -0.55 -8.18 6.07 -10.79 -0.07 -8.25 16 7 H 0.42 5.65 8.32 -40.82 -0.34 5.31 16 8 C -0.07 -1.24 7.08 -82.14 -0.58 -1.82 16 9 C 0.59 11.27 7.79 -12.82 -0.10 11.17 16 10 O -0.54 -11.28 14.82 5.20 0.08 -11.20 16 11 N -0.69 -12.44 3.86 -61.59 -0.24 -12.68 16 12 C 0.14 2.36 4.43 -4.04 -0.02 2.34 16 13 C 0.16 2.73 3.00 -67.60 -0.20 2.53 16 14 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 15 C -0.13 -1.90 5.03 -26.61 -0.13 -2.03 16 16 C -0.10 -1.35 4.71 -26.69 -0.13 -1.48 16 17 C -0.08 -1.35 0.77 -154.39 -0.12 -1.47 16 18 C -0.14 -1.93 8.48 37.16 0.32 -1.62 16 19 C -0.13 -2.09 7.99 37.16 0.30 -1.80 16 20 C 0.14 2.67 2.87 -3.71 -0.01 2.66 16 21 N -0.60 -11.96 2.16 -164.77 -0.36 -12.32 16 22 C -0.26 -6.19 7.45 -15.06 -0.11 -6.30 16 23 H 0.09 2.47 6.05 -52.49 -0.32 2.15 16 24 C 0.03 0.74 5.26 -17.43 -0.09 0.65 16 25 N -0.90 -25.12 13.97 55.49 0.78 -24.35 16 26 Si 0.87 19.79 24.34 -169.99 -4.14 15.65 16 27 H -0.29 -6.56 6.57 56.52 0.37 -6.19 16 28 H -0.31 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.27 -5.90 6.72 56.52 0.38 -5.52 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.63 6.49 -51.93 -0.34 1.29 16 35 H 0.21 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.40 7.21 6.67 -40.82 -0.27 6.93 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.42 7.39 -51.93 -0.38 1.04 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.02 0.43 7.03 -51.93 -0.37 0.06 16 50 H 0.07 1.58 4.73 -51.93 -0.25 1.33 16 51 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -29.71 386.26 -9.06 -38.77 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -8.43 Total: 13.90 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -2.39 Total: 3.16 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: 0.00 Total: -66.10 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.14 Total: 15.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.71 -9.06 -38.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089725207.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.087 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds