Wall clock time and date at job start Tue Mar 31 2020 18:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46958 * 2 1 4 4 N 1.33319 * 126.10757 * 270.13284 * 3 2 1 5 5 C 1.30858 * 109.68188 * 180.28889 * 4 3 2 6 6 N 1.34487 * 109.16429 * 359.75203 * 5 4 3 7 7 H 0.97009 * 126.47424 * 180.02562 * 6 5 4 8 8 C 1.36662 * 126.10434 * 90.00180 * 3 2 1 9 9 C 1.46767 * 126.84681 * 359.97438 * 8 3 2 10 10 O 1.21689 * 119.99656 * 359.43198 * 9 8 3 11 11 N 1.34772 * 120.00132 * 179.71207 * 9 8 3 12 12 C 1.46495 * 119.99981 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47294 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.58191 * 59.77534 * 13 12 11 15 15 C 1.53192 * 109.59041 * 180.02562 * 13 12 11 16 16 C 1.53037 * 109.31428 * 174.42578 * 15 13 12 17 17 C 1.53051 * 109.53609 * 298.63755 * 16 15 13 18 18 C 1.52996 * 109.49311 * 181.31954 * 17 16 15 19 19 C 1.53000 * 109.49408 * 301.37859 * 17 16 15 20 20 C 1.53185 * 109.31170 * 61.36382 * 17 16 15 21 21 N 1.46924 * 109.58706 * 299.35340 * 13 12 11 22 22 C 1.36939 * 120.62870 * 6.61677 * 21 13 12 23 23 H 1.07990 * 120.00351 * 328.83148 * 22 21 13 24 24 C 1.38813 * 119.99471 * 148.84055 * 22 21 13 25 25 N 1.31620 * 119.99879 * 162.47867 * 24 22 21 26 26 Si 1.86801 * 120.00085 * 342.47071 * 24 22 21 27 27 H 1.48499 * 109.47242 * 90.00920 * 26 24 22 28 28 H 1.48504 * 109.47061 * 210.01361 * 26 24 22 29 29 H 1.48498 * 109.47273 * 330.00785 * 26 24 22 30 30 H 1.09004 * 109.46984 * 60.00080 * 1 2 3 31 31 H 1.09005 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47103 * 299.99758 * 1 2 3 33 33 H 1.09004 * 109.47013 * 240.00500 * 2 1 3 34 34 H 1.08996 * 109.47195 * 120.00214 * 2 1 3 35 35 H 1.08004 * 125.41314 * 179.76518 * 5 4 3 36 36 H 0.97000 * 120.00137 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46969 * 299.99850 * 12 11 9 38 38 H 1.09002 * 109.47555 * 59.99911 * 12 11 9 39 39 H 1.09000 * 109.49693 * 294.37883 * 15 13 12 40 40 H 1.08996 * 109.49182 * 54.43849 * 15 13 12 41 41 H 1.09001 * 109.46252 * 58.65203 * 16 15 13 42 42 H 1.08995 * 109.46185 * 178.63087 * 16 15 13 43 43 H 1.08996 * 109.47973 * 60.00014 * 18 17 16 44 44 H 1.09007 * 109.46763 * 179.97438 * 18 17 16 45 45 H 1.09003 * 109.47069 * 299.99211 * 18 17 16 46 46 H 1.09007 * 109.47082 * 60.00503 * 19 17 16 47 47 H 1.08993 * 109.47201 * 179.97438 * 19 17 16 48 48 H 1.08997 * 109.47804 * 300.00304 * 19 17 16 49 49 H 1.09000 * 109.58699 * 65.15301 * 20 17 16 50 50 H 1.09001 * 109.58301 * 185.43333 * 20 17 16 51 51 H 0.97000 * 119.99946 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2918 2.1624 -1.0771 5 6 2.7169 3.3435 -0.7071 6 7 2.7401 3.4034 0.6362 7 1 3.0132 4.1625 1.1750 8 6 2.3008 2.1801 1.1042 9 6 2.1569 1.7746 2.5073 10 8 1.7513 0.6601 2.7800 11 7 2.4686 2.6383 3.4938 12 6 2.3255 2.2333 4.8943 13 6 2.7429 3.3899 5.8049 14 1 2.1109 4.2560 5.6084 15 6 2.5949 2.9690 7.2704 16 6 3.1436 4.0763 8.1730 17 6 4.6307 4.2867 7.8786 18 6 5.1860 5.3710 8.8042 19 6 5.3878 2.9780 8.1134 20 6 4.8017 4.7225 6.4201 21 7 4.1483 3.7344 5.5508 22 6 4.8363 3.1454 4.5236 23 1 4.5968 2.1366 4.2218 24 6 5.8417 3.8451 3.8706 25 7 6.7244 3.1991 3.1385 26 14 5.9417 5.7036 4.0305 27 1 6.7948 6.0552 5.1940 28 1 6.5312 6.2759 2.7934 29 1 4.5784 6.2573 4.2310 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.0032 4.1429 -1.3744 36 1 2.7884 3.5279 3.2764 37 1 1.2861 1.9713 5.0924 38 1 2.9614 1.3699 5.0898 39 1 1.5415 2.8036 7.4968 40 1 3.1528 2.0486 7.4426 41 1 2.6012 5.0024 7.9824 42 1 3.0173 3.7899 9.2170 43 1 5.0616 5.0617 9.8419 44 1 6.2453 5.5201 8.5945 45 1 4.6471 6.3034 8.6358 46 1 4.9926 2.2061 7.4530 47 1 6.4467 3.1281 7.9032 48 1 5.2634 2.6673 9.1507 49 1 4.3399 5.6990 6.2740 50 1 5.8629 4.7803 6.1780 51 1 7.4267 3.6881 2.6819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089725207.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:16 Heat of formation + Delta-G solvation = 11.420372 kcal Electronic energy + Delta-G solvation = -31053.247432 eV Core-core repulsion = 27180.840679 eV Total energy + Delta-G solvation = -3872.406753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.16678 -40.82890 -39.83601 -36.79050 -35.34433 -34.85211 -33.82182 -32.87781 -32.50983 -30.28205 -28.80981 -28.11755 -27.30871 -25.69940 -24.67159 -24.09559 -23.46597 -21.91803 -21.67724 -20.52683 -19.91040 -19.63511 -18.24979 -17.34409 -17.03823 -16.86625 -16.64856 -16.33914 -15.66380 -15.58741 -15.37055 -15.16177 -15.06975 -14.90967 -14.76310 -14.53091 -14.30016 -14.17536 -14.00525 -13.38649 -13.27418 -13.11319 -12.93253 -12.83954 -12.76949 -12.44360 -12.37573 -12.23191 -12.13789 -11.95818 -11.84509 -11.56273 -11.43508 -11.39488 -11.13771 -11.03752 -10.98466 -10.76943 -10.60113 -10.00373 -9.42321 -8.76299 -8.07446 -5.44126 0.35928 1.31782 1.39738 1.48790 1.88246 2.01230 2.27054 2.44093 2.44911 3.07355 3.32017 3.52534 3.85277 3.88254 3.90935 4.03561 4.12761 4.20365 4.22239 4.32943 4.42454 4.52109 4.54144 4.58458 4.67865 4.72914 4.74579 4.82258 4.83029 4.85786 4.92746 4.95211 5.01316 5.07895 5.09355 5.09821 5.17738 5.25692 5.28131 5.33606 5.42623 5.44128 5.51522 5.57057 5.59534 5.72623 5.95664 6.27040 6.33248 6.58122 6.94208 6.96477 7.23366 7.68202 8.10099 9.10653 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.004223 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.485773 B = 6629.399395 C = 7842.739355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.047 4.047 3 C 0.077 3.923 4 N -0.526 5.526 5 C 0.228 3.772 6 N -0.544 5.544 7 H 0.431 0.569 8 C -0.101 4.101 9 C 0.586 3.414 10 O -0.568 6.568 11 N -0.690 5.690 12 C 0.140 3.860 13 C 0.163 3.837 14 H 0.053 0.947 15 C -0.127 4.127 16 C -0.091 4.091 17 C -0.084 4.084 18 C -0.136 4.136 19 C -0.122 4.122 20 C 0.135 3.865 21 N -0.609 5.609 22 C -0.222 4.222 23 H 0.056 0.944 24 C -0.023 4.023 25 N -0.954 5.954 26 Si 0.931 3.069 27 H -0.292 1.292 28 H -0.318 1.318 29 H -0.250 1.250 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.404 0.596 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.026 0.974 48 H 0.064 0.936 49 H 0.030 0.970 50 H 0.041 0.959 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 5.257 3.867 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.085 4.085 3 C -0.057 4.057 4 N -0.246 5.246 5 C -0.056 4.056 6 N -0.148 5.148 7 H 0.271 0.729 8 C -0.218 4.218 9 C 0.373 3.627 10 O -0.449 6.449 11 N -0.339 5.339 12 C 0.017 3.983 13 C 0.058 3.942 14 H 0.071 0.929 15 C -0.166 4.166 16 C -0.128 4.128 17 C -0.085 4.085 18 C -0.193 4.193 19 C -0.179 4.179 20 C 0.010 3.990 21 N -0.334 5.334 22 C -0.352 4.352 23 H 0.074 0.926 24 C -0.218 4.218 25 N -0.600 5.600 26 Si 0.761 3.239 27 H -0.220 1.220 28 H -0.248 1.248 29 H -0.174 1.174 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.274 0.726 36 H 0.240 0.760 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.047 0.953 50 H 0.059 0.941 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.159 4.223 3.219 12.358 hybrid contribution 1.642 1.836 0.606 2.537 sum -9.517 6.058 3.825 11.913 Atomic orbital electron populations 1.21514 0.93174 1.02494 1.01040 1.20013 0.97241 0.88454 1.02824 1.21237 0.99900 0.97480 0.87092 1.70081 1.20344 1.03745 1.30432 1.25979 0.99268 0.98136 0.82222 1.43335 1.48985 1.13214 1.09250 0.72850 1.20918 1.16377 0.89623 0.94860 1.17016 0.77570 0.84636 0.83466 1.90722 1.49509 1.21054 1.83616 1.45772 1.64935 1.17076 1.06107 1.21304 1.00070 0.97389 0.79577 1.20956 0.84620 0.94688 0.93954 0.92904 1.21964 1.01612 0.99110 0.93930 1.21411 0.93352 0.98577 0.99500 1.21011 0.96751 0.95874 0.94902 1.21796 1.00057 0.98011 0.99479 1.21664 0.98350 0.97251 1.00672 1.21448 0.95812 0.91360 0.90370 1.44445 1.07738 1.48826 1.32370 1.18694 1.13150 0.95973 1.07411 0.92623 1.25796 0.97730 1.00372 0.97857 1.69977 1.16710 1.36333 1.36969 0.86180 0.78705 0.84194 0.74789 1.21962 1.24767 1.17390 0.92493 0.90572 0.94124 0.90119 0.90899 0.72595 0.76027 0.90145 0.94136 0.89523 0.92455 0.91530 0.90384 0.90830 0.94085 0.92071 0.93651 0.95476 0.91737 0.95257 0.94123 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 9.89 71.98 0.71 -2.68 16 2 C -0.05 -1.52 5.93 29.85 0.18 -1.34 16 3 C 0.08 2.75 6.40 41.97 0.27 3.02 16 4 N -0.53 -17.13 11.20 -187.59 -2.10 -19.23 16 5 C 0.23 5.97 13.01 180.33 2.35 8.31 16 6 N -0.54 -15.98 6.07 -188.04 -1.14 -17.12 16 7 H 0.43 11.18 8.32 -92.70 -0.77 10.41 16 8 C -0.10 -3.67 7.08 40.01 0.28 -3.39 16 9 C 0.59 23.10 7.79 86.47 0.67 23.78 16 10 O -0.57 -24.66 14.82 -4.31 -0.06 -24.73 16 11 N -0.69 -25.20 3.86 -467.00 -1.80 -27.00 16 12 C 0.14 4.84 4.43 86.38 0.38 5.22 16 13 C 0.16 5.17 3.00 44.98 0.14 5.31 16 14 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 15 C -0.13 -3.30 5.03 30.67 0.15 -3.14 16 16 C -0.09 -2.16 4.71 30.62 0.14 -2.01 16 17 C -0.08 -2.45 0.77 -52.10 -0.04 -2.49 16 18 C -0.14 -3.30 8.48 71.98 0.61 -2.69 16 19 C -0.12 -3.89 7.99 71.98 0.57 -3.31 16 20 C 0.13 5.00 2.87 86.36 0.25 5.25 16 21 N -0.61 -23.88 2.16 -675.22 -1.46 -25.34 16 22 C -0.22 -10.79 7.45 84.03 0.63 -10.16 16 23 H 0.06 3.13 6.05 -2.92 -0.02 3.11 16 24 C -0.02 -1.17 5.26 84.86 0.45 -0.72 16 25 N -0.95 -55.75 13.97 21.65 0.30 -55.45 16 26 Si 0.93 41.50 24.34 68.60 1.67 43.17 16 27 H -0.29 -13.18 6.57 99.48 0.65 -12.52 16 28 H -0.32 -14.76 7.11 99.48 0.71 -14.05 16 29 H -0.25 -10.07 6.72 99.48 0.67 -9.40 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.07 2.65 6.49 -2.39 -0.02 2.64 16 35 H 0.26 3.83 8.06 -2.91 -0.02 3.80 16 36 H 0.40 14.46 6.67 -92.71 -0.62 13.85 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 38 H 0.04 1.66 7.39 -2.39 -0.02 1.64 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.67 6.34 -2.39 -0.02 1.66 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.04 1.66 5.98 -2.38 -0.01 1.65 16 47 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.03 1.06 7.03 -2.39 -0.02 1.04 16 50 H 0.04 1.77 4.73 -2.39 -0.01 1.76 16 51 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -68.20 386.26 2.61 -65.59 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -0.54 Total: 41.17 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.74 Total: 18.95 kcal Atomic # 7 Polarization: -137.95 SS G_CDS: -6.20 Total: -144.15 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.73 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.67 Total: 43.17 kcal Total: -68.20 2.61 -65.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089725207.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.011 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds