Wall clock time and date at job start Tue Mar 31 2020 18:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47182 * 2 1 4 4 N 1.33323 * 126.10719 * 270.12485 * 3 2 1 5 5 C 1.30852 * 109.68645 * 180.27309 * 4 3 2 6 6 N 1.34500 * 109.16307 * 359.76316 * 5 4 3 7 7 H 0.96999 * 126.47078 * 179.97438 * 6 5 4 8 8 C 1.36659 * 126.11028 * 89.99781 * 3 2 1 9 9 C 1.46767 * 126.84259 * 0.02562 * 8 3 2 10 10 O 1.21683 * 120.00085 * 359.70676 * 9 8 3 11 11 N 1.34773 * 120.00087 * 179.70783 * 9 8 3 12 12 C 1.46502 * 120.00211 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47278 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.58706 * 300.04244 * 13 12 11 15 15 C 1.53190 * 109.70246 * 179.68805 * 13 12 11 16 16 C 1.53043 * 109.31159 * 185.50824 * 15 13 12 17 17 C 1.53047 * 109.53771 * 61.36756 * 16 15 13 18 18 C 1.53003 * 109.49576 * 178.68385 * 17 16 15 19 19 C 1.52997 * 109.49887 * 58.58482 * 17 16 15 20 20 C 1.53196 * 109.30820 * 298.63518 * 17 16 15 21 21 N 1.46921 * 109.58541 * 60.33077 * 13 12 11 22 22 C 1.36937 * 120.63123 * 353.55551 * 21 13 12 23 23 H 1.07997 * 120.00186 * 49.39214 * 22 21 13 24 24 C 1.38821 * 120.00079 * 229.39247 * 22 21 13 25 25 N 1.31611 * 119.99813 * 188.57183 * 24 22 21 26 26 Si 1.86801 * 119.99924 * 8.57041 * 24 22 21 27 27 H 1.48503 * 109.47174 * 84.41623 * 26 24 22 28 28 H 1.48502 * 109.47043 * 204.41098 * 26 24 22 29 29 H 1.48494 * 109.46996 * 324.41442 * 26 24 22 30 30 H 1.08999 * 109.46832 * 60.00018 * 1 2 3 31 31 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46933 * 300.00029 * 1 2 3 33 33 H 1.08996 * 109.47095 * 239.99756 * 2 1 3 34 34 H 1.08999 * 109.46832 * 119.99982 * 2 1 3 35 35 H 1.08005 * 125.42247 * 179.78272 * 5 4 3 36 36 H 0.96999 * 120.00267 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.46787 * 60.00135 * 12 11 9 38 38 H 1.08992 * 109.47564 * 300.00423 * 12 11 9 39 39 H 1.09003 * 109.49701 * 305.45873 * 15 13 12 40 40 H 1.09002 * 109.49864 * 65.56045 * 15 13 12 41 41 H 1.08998 * 109.46282 * 301.34409 * 16 15 13 42 42 H 1.09003 * 109.46136 * 181.38235 * 16 15 13 43 43 H 1.09004 * 109.46626 * 179.83315 * 18 17 16 44 44 H 1.09002 * 109.46926 * 299.83033 * 18 17 16 45 45 H 1.08996 * 109.47389 * 59.83795 * 18 17 16 46 46 H 1.09011 * 109.47201 * 300.16456 * 19 17 16 47 47 H 1.09002 * 109.47258 * 60.15996 * 19 17 16 48 48 H 1.08998 * 109.47146 * 180.16610 * 19 17 16 49 49 H 1.09005 * 109.58437 * 294.84461 * 20 17 16 50 50 H 1.08997 * 109.70019 * 174.49125 * 20 17 16 51 51 H 0.97003 * 120.00018 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2921 2.1623 -1.0771 5 6 2.7168 3.3434 -0.7073 6 7 2.7398 3.4035 0.6362 7 1 3.0134 4.1625 1.1748 8 6 2.3008 2.1801 1.1040 9 6 2.1578 1.7743 2.5072 10 8 1.7579 0.6579 2.7800 11 7 2.4695 2.6381 3.4937 12 6 2.3262 2.2333 4.8943 13 6 2.7435 3.3899 5.8048 14 1 3.7826 3.6535 5.6077 15 6 2.5883 2.9748 7.2712 16 6 2.8754 4.1789 8.1712 17 6 1.8670 5.2913 7.8748 18 6 2.1343 6.4820 8.7978 19 6 0.4479 4.7703 8.1103 20 6 2.0140 5.7326 6.4152 21 7 1.8832 4.5531 5.5491 22 6 0.9763 4.5381 4.5232 23 1 0.3032 3.7012 4.4096 24 6 0.9221 5.5986 3.6290 25 7 -0.0537 5.6678 2.7486 26 14 2.2342 6.9274 3.6755 27 1 3.4111 6.4889 2.8830 28 1 1.6886 8.1822 3.0984 29 1 2.6460 7.1673 5.0819 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0029 4.1430 -1.3745 36 1 2.7886 3.5280 3.2763 37 1 2.9622 1.3698 5.0898 38 1 1.2870 1.9712 5.0924 39 1 1.5705 2.6254 7.4446 40 1 3.2922 2.1742 7.4991 41 1 3.8847 4.5431 7.9795 42 1 2.7897 3.8800 9.2159 43 1 1.4177 7.2752 8.5843 44 1 2.0295 6.1674 9.8362 45 1 3.1459 6.8516 8.6304 46 1 0.2589 3.9211 7.4534 47 1 0.3438 4.4563 9.1489 48 1 -0.2700 5.5620 7.8963 49 1 2.9937 6.1874 6.2679 50 1 1.2354 6.4547 6.1694 51 1 -0.0918 6.4090 2.1241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089725208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:26 Heat of formation + Delta-G solvation = 30.520674 kcal Electronic energy + Delta-G solvation = -31221.157172 eV Core-core repulsion = 27349.578671 eV Total energy + Delta-G solvation = -3871.578502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.83607 -39.32695 -38.32081 -35.29564 -33.94005 -33.14838 -32.34523 -31.51257 -30.92409 -28.92286 -27.46987 -26.84773 -25.65798 -24.26270 -23.17699 -22.61437 -22.17023 -20.52202 -20.20791 -19.10383 -18.49802 -18.19467 -16.62842 -15.74174 -15.51847 -15.37726 -15.13406 -14.84406 -14.37792 -14.22156 -13.98084 -13.66281 -13.58299 -13.50981 -13.37701 -13.08311 -12.92598 -12.65775 -12.47362 -11.98079 -11.92464 -11.64956 -11.61449 -11.43390 -11.22057 -11.10233 -11.02610 -10.87475 -10.70523 -10.62515 -10.45534 -10.03325 -10.00334 -9.80313 -9.70897 -9.66073 -9.43430 -9.27132 -8.70151 -8.39959 -8.01270 -6.74497 -6.13834 -3.75886 1.76343 3.05232 3.19486 3.25125 3.26172 3.32281 3.75564 3.96392 4.30065 4.71981 4.76102 5.05199 5.16089 5.23298 5.26513 5.29772 5.35066 5.50029 5.53618 5.66348 5.78372 5.85138 5.87557 5.91688 5.96240 5.99005 6.01292 6.09436 6.12061 6.18577 6.23971 6.25729 6.28072 6.31713 6.32483 6.46385 6.51787 6.59247 6.63476 6.68107 6.69182 6.78691 6.84907 6.92597 7.02812 7.10322 7.53581 7.92316 8.09878 8.30094 8.32173 8.79200 8.79985 9.48296 9.98275 10.98306 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.004327 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.622782 B = 6469.086523 C = 7471.847120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 C 0.082 3.918 4 N -0.501 5.501 5 C 0.206 3.794 6 N -0.544 5.544 7 H 0.423 0.577 8 C -0.066 4.066 9 C 0.591 3.409 10 O -0.545 6.545 11 N -0.687 5.687 12 C 0.141 3.859 13 C 0.159 3.841 14 H 0.034 0.966 15 C -0.130 4.130 16 C -0.096 4.096 17 C -0.088 4.088 18 C -0.138 4.138 19 C -0.126 4.126 20 C 0.151 3.849 21 N -0.601 5.601 22 C -0.260 4.260 23 H 0.077 0.923 24 C 0.041 3.959 25 N -0.896 5.896 26 Si 0.839 3.161 27 H -0.291 1.291 28 H -0.299 1.299 29 H -0.234 1.234 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.209 0.791 36 H 0.402 0.598 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.035 0.965 48 H 0.046 0.954 49 H 0.029 0.971 50 H 0.063 0.937 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 -2.280 3.459 8.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.052 4.052 4 N -0.221 5.221 5 C -0.078 4.078 6 N -0.148 5.148 7 H 0.262 0.738 8 C -0.183 4.183 9 C 0.377 3.623 10 O -0.424 6.424 11 N -0.337 5.337 12 C 0.017 3.983 13 C 0.053 3.947 14 H 0.051 0.949 15 C -0.170 4.170 16 C -0.134 4.134 17 C -0.090 4.090 18 C -0.196 4.196 19 C -0.184 4.184 20 C 0.026 3.974 21 N -0.327 5.327 22 C -0.389 4.389 23 H 0.095 0.905 24 C -0.161 4.161 25 N -0.536 5.536 26 Si 0.667 3.333 27 H -0.218 1.218 28 H -0.226 1.226 29 H -0.158 1.158 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.225 0.775 36 H 0.238 0.762 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.046 0.954 50 H 0.082 0.918 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.964 -3.237 2.725 8.149 hybrid contribution 0.928 2.487 0.786 2.768 sum 7.892 -0.751 3.511 8.671 Atomic orbital electron populations 1.21612 0.94642 1.01170 1.02105 1.19956 0.96094 0.88977 1.02977 1.20901 1.00453 0.97085 0.86758 1.70031 1.18644 1.02808 1.30609 1.24929 1.02711 0.97917 0.82282 1.43341 1.49209 1.13559 1.08682 0.73825 1.21041 1.14095 0.87660 0.95482 1.16761 0.78054 0.84841 0.82666 1.90740 1.48028 1.20587 1.83071 1.45735 1.65702 1.16412 1.05801 1.21216 1.01717 0.95589 0.79785 1.20858 0.93564 0.88061 0.92243 0.94884 1.21985 1.01909 0.97120 0.95954 1.21415 0.98306 0.95456 0.98213 1.21113 0.95688 0.94663 0.97527 1.21814 1.00907 0.98114 0.98726 1.21718 0.95274 1.01824 0.99540 1.21723 0.98574 0.89836 0.87244 1.44325 1.42161 1.12592 1.33582 1.18686 1.11033 1.07227 1.01939 0.90514 1.25775 0.96849 0.98146 0.95289 1.69797 1.31387 1.31637 1.20769 0.87802 0.82387 0.82330 0.80741 1.21795 1.22590 1.15804 0.93126 0.92688 0.92207 0.91331 0.89024 0.77480 0.76208 0.92432 0.91119 0.91194 0.92681 0.92887 0.93080 0.92993 0.93371 0.93339 0.91247 0.94592 0.93451 0.95359 0.91815 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.90 37.16 0.37 -1.83 16 2 C -0.04 -0.68 5.93 -27.88 -0.17 -0.85 16 3 C 0.08 1.51 6.40 -82.52 -0.53 0.98 16 4 N -0.50 -8.77 11.20 -10.64 -0.12 -8.89 16 5 C 0.21 3.09 13.01 -90.57 -1.18 1.91 16 6 N -0.54 -8.89 6.07 -10.79 -0.07 -8.96 16 7 H 0.42 6.50 8.32 -40.82 -0.34 6.16 16 8 C -0.07 -1.24 7.08 -82.15 -0.58 -1.82 16 9 C 0.59 11.77 7.79 -12.82 -0.10 11.67 16 10 O -0.55 -11.69 14.82 5.20 0.08 -11.61 16 11 N -0.69 -12.91 4.14 -61.59 -0.25 -13.17 16 12 C 0.14 2.49 4.50 -4.04 -0.02 2.47 16 13 C 0.16 2.67 3.00 -67.60 -0.20 2.46 16 14 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 15 C -0.13 -1.88 5.04 -26.61 -0.13 -2.02 16 16 C -0.10 -1.33 4.71 -26.68 -0.13 -1.46 16 17 C -0.09 -1.35 0.77 -154.38 -0.12 -1.47 16 18 C -0.14 -1.83 8.48 37.16 0.32 -1.52 16 19 C -0.13 -2.00 7.99 37.16 0.30 -1.71 16 20 C 0.15 2.79 2.70 -3.71 -0.01 2.78 16 21 N -0.60 -11.70 1.85 -164.78 -0.30 -12.01 16 22 C -0.26 -6.04 6.61 -15.06 -0.10 -6.14 16 23 H 0.08 2.10 7.10 -52.49 -0.37 1.73 16 24 C 0.04 1.00 5.29 -17.43 -0.09 0.91 16 25 N -0.90 -24.27 13.97 55.49 0.78 -23.50 16 26 Si 0.84 18.08 26.62 -169.99 -4.52 13.55 16 27 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.30 -6.95 7.11 56.52 0.40 -6.54 16 29 H -0.23 -4.72 3.87 56.52 0.22 -4.50 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.56 6.48 -51.93 -0.34 1.22 16 35 H 0.21 2.14 8.06 -52.48 -0.42 1.71 16 36 H 0.40 7.63 6.59 -40.82 -0.27 7.36 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.41 7.45 -51.93 -0.39 1.02 16 39 H 0.07 1.07 6.33 -51.93 -0.33 0.75 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.23 5.97 -51.92 -0.31 0.93 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.03 0.54 6.36 -51.93 -0.33 0.21 16 50 H 0.06 1.31 6.48 -51.93 -0.34 0.98 16 51 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -28.34 387.40 -9.62 -37.96 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -8.67 Total: 16.40 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.37 Total: 4.38 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: 0.03 Total: -66.52 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -4.52 Total: 13.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.34 -9.62 -37.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089725208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.481 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds