Wall clock time and date at job start Tue Mar 31 2020 18:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47182 * 2 1 4 4 N 1.33323 * 126.10719 * 270.12485 * 3 2 1 5 5 C 1.30852 * 109.68645 * 180.27309 * 4 3 2 6 6 N 1.34500 * 109.16307 * 359.76316 * 5 4 3 7 7 H 0.96999 * 126.47078 * 179.97438 * 6 5 4 8 8 C 1.36659 * 126.11028 * 89.99781 * 3 2 1 9 9 C 1.46767 * 126.84259 * 0.02562 * 8 3 2 10 10 O 1.21683 * 120.00085 * 359.70676 * 9 8 3 11 11 N 1.34773 * 120.00087 * 179.70783 * 9 8 3 12 12 C 1.46502 * 120.00211 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47278 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.58706 * 300.04244 * 13 12 11 15 15 C 1.53190 * 109.70246 * 179.68805 * 13 12 11 16 16 C 1.53043 * 109.31159 * 185.50824 * 15 13 12 17 17 C 1.53047 * 109.53771 * 61.36756 * 16 15 13 18 18 C 1.53003 * 109.49576 * 178.68385 * 17 16 15 19 19 C 1.52997 * 109.49887 * 58.58482 * 17 16 15 20 20 C 1.53196 * 109.30820 * 298.63518 * 17 16 15 21 21 N 1.46921 * 109.58541 * 60.33077 * 13 12 11 22 22 C 1.36937 * 120.63123 * 353.55551 * 21 13 12 23 23 H 1.07997 * 120.00186 * 49.39214 * 22 21 13 24 24 C 1.38821 * 120.00079 * 229.39247 * 22 21 13 25 25 N 1.31611 * 119.99813 * 188.57183 * 24 22 21 26 26 Si 1.86801 * 119.99924 * 8.57041 * 24 22 21 27 27 H 1.48503 * 109.47174 * 84.41623 * 26 24 22 28 28 H 1.48502 * 109.47043 * 204.41098 * 26 24 22 29 29 H 1.48494 * 109.46996 * 324.41442 * 26 24 22 30 30 H 1.08999 * 109.46832 * 60.00018 * 1 2 3 31 31 H 1.09003 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46933 * 300.00029 * 1 2 3 33 33 H 1.08996 * 109.47095 * 239.99756 * 2 1 3 34 34 H 1.08999 * 109.46832 * 119.99982 * 2 1 3 35 35 H 1.08005 * 125.42247 * 179.78272 * 5 4 3 36 36 H 0.96999 * 120.00267 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.46787 * 60.00135 * 12 11 9 38 38 H 1.08992 * 109.47564 * 300.00423 * 12 11 9 39 39 H 1.09003 * 109.49701 * 305.45873 * 15 13 12 40 40 H 1.09002 * 109.49864 * 65.56045 * 15 13 12 41 41 H 1.08998 * 109.46282 * 301.34409 * 16 15 13 42 42 H 1.09003 * 109.46136 * 181.38235 * 16 15 13 43 43 H 1.09004 * 109.46626 * 179.83315 * 18 17 16 44 44 H 1.09002 * 109.46926 * 299.83033 * 18 17 16 45 45 H 1.08996 * 109.47389 * 59.83795 * 18 17 16 46 46 H 1.09011 * 109.47201 * 300.16456 * 19 17 16 47 47 H 1.09002 * 109.47258 * 60.15996 * 19 17 16 48 48 H 1.08998 * 109.47146 * 180.16610 * 19 17 16 49 49 H 1.09005 * 109.58437 * 294.84461 * 20 17 16 50 50 H 1.08997 * 109.70019 * 174.49125 * 20 17 16 51 51 H 0.97003 * 120.00018 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2921 2.1623 -1.0771 5 6 2.7168 3.3434 -0.7073 6 7 2.7398 3.4035 0.6362 7 1 3.0134 4.1625 1.1748 8 6 2.3008 2.1801 1.1040 9 6 2.1578 1.7743 2.5072 10 8 1.7579 0.6579 2.7800 11 7 2.4695 2.6381 3.4937 12 6 2.3262 2.2333 4.8943 13 6 2.7435 3.3899 5.8048 14 1 3.7826 3.6535 5.6077 15 6 2.5883 2.9748 7.2712 16 6 2.8754 4.1789 8.1712 17 6 1.8670 5.2913 7.8748 18 6 2.1343 6.4820 8.7978 19 6 0.4479 4.7703 8.1103 20 6 2.0140 5.7326 6.4152 21 7 1.8832 4.5531 5.5491 22 6 0.9763 4.5381 4.5232 23 1 0.3032 3.7012 4.4096 24 6 0.9221 5.5986 3.6290 25 7 -0.0537 5.6678 2.7486 26 14 2.2342 6.9274 3.6755 27 1 3.4111 6.4889 2.8830 28 1 1.6886 8.1822 3.0984 29 1 2.6460 7.1673 5.0819 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0029 4.1430 -1.3745 36 1 2.7886 3.5280 3.2763 37 1 2.9622 1.3698 5.0898 38 1 1.2870 1.9712 5.0924 39 1 1.5705 2.6254 7.4446 40 1 3.2922 2.1742 7.4991 41 1 3.8847 4.5431 7.9795 42 1 2.7897 3.8800 9.2159 43 1 1.4177 7.2752 8.5843 44 1 2.0295 6.1674 9.8362 45 1 3.1459 6.8516 8.6304 46 1 0.2589 3.9211 7.4534 47 1 0.3438 4.4563 9.1489 48 1 -0.2700 5.5620 7.8963 49 1 2.9937 6.1874 6.2679 50 1 1.2354 6.4547 6.1694 51 1 -0.0918 6.4090 2.1241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089725208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:24 Heat of formation + Delta-G solvation = 14.333387 kcal Electronic energy + Delta-G solvation = -31221.859106 eV Core-core repulsion = 27349.578671 eV Total energy + Delta-G solvation = -3872.280435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.17040 -40.75965 -39.79709 -36.74540 -35.32123 -34.79416 -33.80392 -32.87699 -32.52788 -30.28288 -28.77875 -28.08578 -27.29905 -25.65591 -24.61748 -24.01736 -23.46752 -21.90836 -21.72673 -20.51856 -19.87189 -19.61754 -18.25929 -17.24709 -16.99467 -16.85640 -16.65363 -16.30946 -15.67191 -15.56560 -15.37186 -15.12861 -14.99610 -14.82540 -14.76932 -14.54658 -14.33151 -14.16834 -13.94431 -13.33753 -13.29105 -13.04614 -12.83727 -12.76300 -12.69283 -12.55485 -12.40327 -12.28775 -12.09175 -11.98878 -11.93237 -11.48481 -11.39585 -11.23498 -11.08576 -10.99714 -10.95027 -10.75212 -10.44057 -9.97308 -9.41644 -8.41548 -8.05952 -5.66537 0.36093 1.32967 1.48397 1.52798 1.86534 2.00214 2.27965 2.46886 2.48697 3.17068 3.31675 3.51413 3.87540 3.91014 3.96190 4.08701 4.12998 4.18132 4.27025 4.36221 4.46474 4.51089 4.55574 4.61467 4.71675 4.74121 4.76650 4.82212 4.86940 4.90673 4.99832 5.04445 5.05415 5.07068 5.12730 5.13716 5.21156 5.26132 5.30538 5.33185 5.46501 5.47897 5.56299 5.57175 5.61918 5.75503 6.03853 6.29281 6.37350 6.59528 6.93180 7.05991 7.25096 7.65046 8.17087 9.09366 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.004327 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.622782 B = 6469.086523 C = 7471.847120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.041 4.041 3 C 0.076 3.924 4 N -0.522 5.522 5 C 0.225 3.775 6 N -0.544 5.544 7 H 0.427 0.573 8 C -0.099 4.099 9 C 0.585 3.415 10 O -0.570 6.570 11 N -0.685 5.685 12 C 0.143 3.857 13 C 0.160 3.840 14 H 0.052 0.948 15 C -0.126 4.126 16 C -0.091 4.091 17 C -0.086 4.086 18 C -0.133 4.133 19 C -0.121 4.121 20 C 0.148 3.852 21 N -0.608 5.608 22 C -0.227 4.227 23 H 0.024 0.976 24 C -0.003 4.003 25 N -0.948 5.948 26 Si 0.891 3.109 27 H -0.271 1.271 28 H -0.323 1.323 29 H -0.209 1.209 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.257 0.743 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.041 0.959 47 H 0.060 0.940 48 H 0.030 0.970 49 H 0.038 0.962 50 H 0.036 0.964 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.313 -1.688 4.810 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C -0.059 4.059 4 N -0.243 5.243 5 C -0.059 4.059 6 N -0.148 5.148 7 H 0.266 0.734 8 C -0.215 4.215 9 C 0.372 3.628 10 O -0.451 6.451 11 N -0.333 5.333 12 C 0.020 3.980 13 C 0.055 3.945 14 H 0.069 0.931 15 C -0.165 4.165 16 C -0.129 4.129 17 C -0.088 4.088 18 C -0.191 4.191 19 C -0.178 4.178 20 C 0.024 3.976 21 N -0.334 5.334 22 C -0.357 4.357 23 H 0.042 0.958 24 C -0.200 4.200 25 N -0.592 5.592 26 Si 0.719 3.281 27 H -0.197 1.197 28 H -0.251 1.251 29 H -0.132 1.132 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.272 0.728 36 H 0.237 0.763 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.874 -2.657 4.135 11.030 hybrid contribution -0.047 2.247 0.374 2.278 sum 9.828 -0.410 4.509 10.821 Atomic orbital electron populations 1.21543 0.94490 1.02361 1.00362 1.19990 0.96124 0.88410 1.03423 1.21263 0.99792 0.97842 0.86992 1.70070 1.19976 1.03844 1.30372 1.25944 0.99727 0.98082 0.82151 1.43342 1.49195 1.12959 1.09271 0.73381 1.20962 1.16429 0.89081 0.95032 1.17021 0.77624 0.84689 0.83486 1.90705 1.49189 1.21563 1.83643 1.45729 1.65341 1.16133 1.06140 1.21256 1.00198 0.96971 0.79623 1.21016 0.93496 0.86330 0.93706 0.93079 1.21947 1.01964 0.98520 0.94070 1.21407 0.98155 0.94063 0.99240 1.21070 0.95700 0.96375 0.95638 1.21769 1.01376 0.96779 0.99188 1.21655 0.95650 1.00180 1.00355 1.21711 0.97853 0.88783 0.89244 1.44349 1.42003 1.13905 1.33105 1.18193 1.10063 1.05034 1.02453 0.95813 1.26232 0.98474 1.00315 0.94990 1.69973 1.33993 1.32628 1.22558 0.86952 0.80431 0.78609 0.82128 1.19731 1.25146 1.13246 0.93061 0.90075 0.95541 0.89247 0.90034 0.72768 0.76322 0.90464 0.94409 0.92657 0.89877 0.91570 0.90714 0.93673 0.91328 0.92183 0.93982 0.92148 0.95116 0.94457 0.94570 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.90 71.98 0.71 -3.51 16 2 C -0.04 -1.37 5.93 29.85 0.18 -1.19 16 3 C 0.08 2.80 6.40 41.96 0.27 3.06 16 4 N -0.52 -17.81 11.20 -187.59 -2.10 -19.92 16 5 C 0.22 6.38 13.01 180.33 2.35 8.73 16 6 N -0.54 -17.57 6.07 -188.04 -1.14 -18.71 16 7 H 0.43 12.88 8.32 -92.71 -0.77 12.11 16 8 C -0.10 -3.78 7.08 40.01 0.28 -3.50 16 9 C 0.58 24.24 7.79 86.47 0.67 24.92 16 10 O -0.57 -25.63 14.82 -4.29 -0.06 -25.69 16 11 N -0.69 -26.43 4.14 -467.00 -1.93 -28.37 16 12 C 0.14 5.13 4.50 86.38 0.39 5.52 16 13 C 0.16 5.14 3.00 44.97 0.14 5.28 16 14 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 15 C -0.13 -3.31 5.04 30.67 0.15 -3.16 16 16 C -0.09 -2.15 4.71 30.62 0.14 -2.00 16 17 C -0.09 -2.42 0.77 -52.10 -0.04 -2.46 16 18 C -0.13 -3.07 8.48 71.98 0.61 -2.46 16 19 C -0.12 -3.73 7.99 71.98 0.58 -3.15 16 20 C 0.15 5.25 2.70 86.36 0.23 5.48 16 21 N -0.61 -23.48 1.85 -675.24 -1.25 -24.73 16 22 C -0.23 -10.97 6.61 84.04 0.56 -10.42 16 23 H 0.02 1.42 7.10 -2.91 -0.02 1.40 16 24 C 0.00 -0.16 5.29 84.87 0.45 0.29 16 25 N -0.95 -53.82 13.97 21.65 0.30 -53.52 16 26 Si 0.89 37.25 26.62 68.60 1.83 39.08 16 27 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 28 H -0.32 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.21 -7.84 3.87 99.48 0.38 -7.46 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 2.86 6.48 -2.39 -0.02 2.84 16 35 H 0.26 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.40 15.39 6.59 -92.71 -0.61 14.78 16 37 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.04 1.60 7.45 -2.39 -0.02 1.58 16 39 H 0.05 1.64 6.33 -2.39 -0.02 1.62 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.04 1.51 5.97 -2.38 -0.01 1.50 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.04 1.28 6.36 -2.38 -0.02 1.26 16 50 H 0.04 1.47 6.48 -2.39 -0.02 1.45 16 51 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -65.96 387.40 2.54 -63.42 By element: Atomic # 1 Polarization: 47.77 SS G_CDS: -0.76 Total: 47.01 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 7.67 Total: 21.43 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -6.12 Total: -145.25 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 1.83 Total: 39.08 kcal Total: -65.96 2.54 -63.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089725208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.751 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds