Wall clock time and date at job start Tue Mar 31 2020 18:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47570 * 2 1 4 4 N 1.30497 * 125.64546 * 269.96247 * 3 2 1 5 5 C 1.34132 * 109.25155 * 180.02562 * 4 3 2 6 6 C 1.34668 * 108.02024 * 359.72616 * 5 4 3 7 7 N 1.35044 * 125.64881 * 89.99733 * 3 2 1 8 8 C 1.46496 * 126.39628 * 359.97197 * 7 3 2 9 9 H 1.08992 * 109.47714 * 359.97438 * 8 7 3 10 10 C 1.53005 * 109.47380 * 119.99909 * 8 7 3 11 11 C 1.53002 * 109.46906 * 239.99488 * 8 7 3 12 12 C 1.50697 * 109.47431 * 174.99962 * 11 8 7 13 13 O 1.21283 * 119.99626 * 0.02562 * 12 11 8 14 14 N 1.34772 * 120.00066 * 179.97438 * 12 11 8 15 15 C 1.46500 * 120.00059 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47425 * 180.02562 * 15 14 12 17 17 C 1.53781 * 113.61609 * 175.00005 * 16 15 14 18 18 C 1.53781 * 87.08070 * 139.98229 * 17 16 15 19 19 N 1.46497 * 113.61305 * 219.93536 * 18 17 16 20 20 C 1.36944 * 119.99791 * 203.46713 * 19 18 17 21 21 H 1.07993 * 120.00042 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99770 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46991 * 60.00036 * 24 22 20 26 26 H 1.48495 * 109.47111 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47014 * 300.00285 * 24 22 20 28 28 C 1.53786 * 87.17350 * 334.52830 * 18 17 16 29 29 H 1.09009 * 109.46933 * 300.00521 * 1 2 3 30 30 H 1.09006 * 109.46927 * 59.99623 * 1 2 3 31 31 H 1.08997 * 109.47777 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47135 * 239.99387 * 2 1 3 33 33 H 1.09006 * 109.46927 * 120.00377 * 2 1 3 34 34 H 1.08002 * 125.99145 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.59209 * 180.28593 * 6 5 4 36 36 H 1.08997 * 109.47152 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.46620 * 300.00146 * 10 8 7 38 38 H 1.09003 * 109.46700 * 59.99098 * 10 8 7 39 39 H 1.09005 * 109.47358 * 54.99756 * 11 8 7 40 40 H 1.09006 * 109.47182 * 295.00441 * 11 8 7 41 41 H 0.96996 * 120.00586 * 0.02562 * 14 12 11 42 42 H 1.08997 * 109.47114 * 60.00231 * 15 14 12 43 43 H 1.09006 * 109.47306 * 300.00712 * 15 14 12 44 44 H 1.08996 * 112.84723 * 43.80825 * 16 15 14 45 45 H 1.08999 * 113.61181 * 25.43284 * 17 16 15 46 46 H 1.08998 * 113.61680 * 254.52836 * 17 16 15 47 47 H 1.09002 * 113.61445 * 89.11830 * 18 17 16 48 48 H 0.96995 * 120.00146 * 23.47603 * 19 18 17 49 49 H 0.96996 * 120.00281 * 179.97438 * 23 22 20 50 50 H 1.08992 * 113.61675 * 140.02412 * 28 18 17 51 51 H 1.09000 * 113.60973 * 270.92699 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2866 2.1375 -1.0605 5 6 2.7160 3.3506 -0.6819 6 6 2.7225 3.3888 0.6642 7 7 2.2948 2.1628 1.0974 8 6 2.1436 1.7373 2.4910 9 1 1.7795 0.7104 2.5199 10 6 3.4976 1.8189 3.1990 11 6 1.1424 2.6530 3.1981 12 6 0.8938 2.1427 4.5940 13 8 1.4618 1.1450 4.9850 14 7 0.0410 2.7955 5.4082 15 6 -0.2004 2.2997 6.7655 16 6 -1.2017 3.2154 7.4725 17 6 -1.6178 2.7141 8.8655 18 6 -1.5509 4.1796 9.3265 19 7 -0.9729 4.3489 10.6619 20 6 -1.2686 5.4641 11.3996 21 1 -1.9283 6.2185 10.9971 22 6 -0.7214 5.6243 12.6652 23 7 0.0822 4.7046 13.1560 24 14 -1.1253 7.1452 13.6718 25 1 -2.5907 7.2104 13.9037 26 1 -0.4197 7.0769 14.9767 27 1 -0.6863 8.3575 12.9350 28 6 -0.5459 4.4129 8.1860 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0014 4.1571 -1.3411 35 1 3.0120 4.2252 1.2831 36 1 3.3850 1.5027 4.2360 37 1 4.2108 1.1666 2.6952 38 1 3.8613 2.8461 3.1700 39 1 0.2045 2.6636 2.6427 40 1 1.5468 3.6641 3.2475 41 1 -0.4131 3.5936 5.0957 42 1 0.7376 2.2892 7.3206 43 1 -0.6048 1.2886 6.7165 44 1 -2.0440 3.4912 6.8382 45 1 -0.8742 2.0730 9.3390 46 1 -2.6225 2.2924 8.8957 47 1 -2.4887 4.7206 9.1995 48 1 -0.3806 3.6713 11.0235 49 1 0.4650 4.8167 14.0402 50 1 -0.6857 5.3616 7.6680 51 1 0.4902 4.2354 8.4742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100345998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:48 Heat of formation + Delta-G solvation = 40.138245 kcal Electronic energy + Delta-G solvation = -28120.531872 eV Core-core repulsion = 24249.370419 eV Total energy + Delta-G solvation = -3871.161453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50379 -40.17981 -38.62665 -36.09280 -34.81452 -34.15949 -33.36976 -31.29457 -30.36401 -29.01069 -28.81472 -26.87405 -25.17356 -24.32107 -23.94361 -23.30835 -21.52532 -21.14790 -20.56009 -19.58565 -19.12187 -17.86607 -17.11353 -16.74517 -16.36094 -16.01916 -15.65687 -15.21742 -14.91618 -14.82677 -14.55664 -14.34832 -14.07210 -13.79869 -13.69568 -13.59392 -13.38082 -13.22838 -13.00893 -12.65459 -12.27970 -12.02180 -11.97723 -11.93773 -11.88552 -11.65322 -11.45761 -11.44034 -11.29329 -10.87098 -10.60829 -10.40942 -10.26951 -10.21035 -10.00651 -9.89467 -9.86209 -9.55720 -9.19535 -8.91659 -8.63737 -7.01771 -5.82877 -3.12137 1.74585 2.27764 2.33768 2.88789 3.03922 3.39542 3.44168 3.45311 3.98392 4.06891 4.24284 4.35906 4.51219 4.53823 4.65881 4.77247 4.85314 4.87377 4.92121 4.94201 5.01115 5.03344 5.13715 5.23102 5.25666 5.39757 5.41378 5.41733 5.43217 5.49746 5.63369 5.71560 5.73859 5.77761 5.82069 5.84932 6.02663 6.06285 6.14156 6.22351 6.27177 6.33705 6.50040 6.51109 6.74249 6.89818 7.03714 7.23463 7.63877 7.84894 7.92867 8.35581 9.46587 10.04379 10.38449 11.39305 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.001725 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.226666 B =16228.100725 C =16607.229638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.493 5.493 5 C -0.030 4.030 6 C -0.056 4.056 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.167 4.167 11 C -0.153 4.153 12 C 0.516 3.484 13 O -0.539 6.539 14 N -0.721 5.721 15 C 0.131 3.869 16 C -0.128 4.128 17 C -0.142 4.142 18 C 0.166 3.834 19 N -0.713 5.713 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.161 4.161 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.402 0.598 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.385 0.615 49 H 0.257 0.743 50 H 0.053 0.947 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 -6.921 -26.665 27.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.224 4.224 11 C -0.193 4.193 12 C 0.301 3.699 13 O -0.417 6.417 14 N -0.371 5.371 15 C 0.008 3.992 16 C -0.147 4.147 17 C -0.181 4.181 18 C 0.054 3.946 19 N -0.351 5.351 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.202 4.202 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.236 0.764 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.221 -7.772 -26.887 28.075 hybrid contribution -0.032 1.592 1.380 2.107 sum 2.189 -6.180 -25.507 26.336 Atomic orbital electron populations 1.21742 0.93860 1.02424 1.02446 1.19992 0.96506 0.87480 1.04061 1.23282 1.04014 0.96675 0.81360 1.70244 1.18275 1.04333 1.28257 1.22271 1.06539 0.96228 0.92780 1.22628 1.09534 0.89962 0.96758 1.45616 1.48803 1.11699 1.07049 1.21158 0.97256 0.99708 0.77487 0.87089 1.22293 0.94364 1.02704 1.03064 1.22004 1.01506 1.01531 0.94299 1.20183 0.79184 0.83914 0.86596 1.90708 1.48977 1.25586 1.76406 1.46050 1.45544 1.30517 1.15031 1.21485 0.99459 0.97523 0.80689 1.22695 0.98025 0.97968 0.96036 1.23427 1.00999 0.99792 0.93909 1.21513 0.94873 0.92752 0.85509 1.42401 1.55413 1.24080 1.13177 1.19248 1.23679 0.97946 0.96851 0.91154 1.24779 0.99949 0.98472 0.97681 1.69648 1.35518 1.34647 1.18160 0.86260 0.77711 0.82595 0.79556 1.21215 1.21654 1.21244 1.24002 1.01183 0.95683 0.99336 0.92918 0.91826 0.91483 0.88700 0.90338 0.81472 0.81147 0.88274 0.91876 0.92142 0.88186 0.87953 0.76444 0.91040 0.91612 0.89376 0.90072 0.91948 0.90756 0.78065 0.93363 0.92783 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.04 -0.29 6.08 -27.88 -0.17 -0.46 16 3 C 0.21 2.03 7.16 -155.42 -1.11 0.91 16 4 N -0.49 -5.68 11.25 -10.81 -0.12 -5.80 16 5 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 6 C -0.06 -0.46 10.70 -16.56 -0.18 -0.64 16 7 N -0.45 -3.80 2.61 -106.83 -0.28 -4.08 16 8 C 0.15 1.12 2.64 -67.93 -0.18 0.94 16 9 H 0.11 0.88 6.48 -51.93 -0.34 0.55 16 10 C -0.17 -1.35 9.00 37.16 0.33 -1.01 16 11 C -0.15 -1.02 5.18 -27.88 -0.14 -1.17 16 12 C 0.52 4.97 7.55 -10.99 -0.08 4.89 16 13 O -0.54 -7.00 13.96 5.56 0.08 -6.93 16 14 N -0.72 -6.56 5.56 -60.29 -0.33 -6.89 16 15 C 0.13 1.50 5.51 -4.04 -0.02 1.48 16 16 C -0.13 -1.54 3.76 -89.67 -0.34 -1.88 16 17 C -0.14 -2.11 7.39 -25.92 -0.19 -2.30 16 18 C 0.17 3.06 4.47 -67.12 -0.30 2.76 16 19 N -0.71 -17.30 5.41 -52.64 -0.28 -17.59 16 20 C -0.25 -6.67 9.97 -15.06 -0.15 -6.82 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 24 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.16 -2.48 7.45 -25.77 -0.19 -2.67 16 29 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.48 7.08 -51.93 -0.37 0.11 16 34 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.44 7.96 -51.93 -0.41 0.03 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 42 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 48 H 0.39 9.98 7.91 -40.82 -0.32 9.66 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 LS Contribution 414.36 15.07 6.24 6.24 Total: -1.00 -33.00 414.36 -10.45 -43.45 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.79 Total: 9.13 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.66 Total: -7.48 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.30 Total: -61.37 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.08 Total: -6.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.00 -10.45 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100345998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.588 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds