Wall clock time and date at job start Tue Mar 31 2020 18:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47570 * 2 1 4 4 N 1.30497 * 125.64546 * 269.96247 * 3 2 1 5 5 C 1.34132 * 109.25155 * 180.02562 * 4 3 2 6 6 C 1.34668 * 108.02024 * 359.72616 * 5 4 3 7 7 N 1.35044 * 125.64881 * 89.99733 * 3 2 1 8 8 C 1.46496 * 126.39628 * 359.97197 * 7 3 2 9 9 H 1.08992 * 109.47714 * 359.97438 * 8 7 3 10 10 C 1.53005 * 109.47380 * 119.99909 * 8 7 3 11 11 C 1.53002 * 109.46906 * 239.99488 * 8 7 3 12 12 C 1.50697 * 109.47431 * 174.99962 * 11 8 7 13 13 O 1.21283 * 119.99626 * 0.02562 * 12 11 8 14 14 N 1.34772 * 120.00066 * 179.97438 * 12 11 8 15 15 C 1.46500 * 120.00059 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47425 * 180.02562 * 15 14 12 17 17 C 1.53781 * 113.61609 * 175.00005 * 16 15 14 18 18 C 1.53781 * 87.08070 * 139.98229 * 17 16 15 19 19 N 1.46497 * 113.61305 * 219.93536 * 18 17 16 20 20 C 1.36944 * 119.99791 * 203.46713 * 19 18 17 21 21 H 1.07993 * 120.00042 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99770 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46991 * 60.00036 * 24 22 20 26 26 H 1.48495 * 109.47111 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47014 * 300.00285 * 24 22 20 28 28 C 1.53786 * 87.17350 * 334.52830 * 18 17 16 29 29 H 1.09009 * 109.46933 * 300.00521 * 1 2 3 30 30 H 1.09006 * 109.46927 * 59.99623 * 1 2 3 31 31 H 1.08997 * 109.47777 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47135 * 239.99387 * 2 1 3 33 33 H 1.09006 * 109.46927 * 120.00377 * 2 1 3 34 34 H 1.08002 * 125.99145 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.59209 * 180.28593 * 6 5 4 36 36 H 1.08997 * 109.47152 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.46620 * 300.00146 * 10 8 7 38 38 H 1.09003 * 109.46700 * 59.99098 * 10 8 7 39 39 H 1.09005 * 109.47358 * 54.99756 * 11 8 7 40 40 H 1.09006 * 109.47182 * 295.00441 * 11 8 7 41 41 H 0.96996 * 120.00586 * 0.02562 * 14 12 11 42 42 H 1.08997 * 109.47114 * 60.00231 * 15 14 12 43 43 H 1.09006 * 109.47306 * 300.00712 * 15 14 12 44 44 H 1.08996 * 112.84723 * 43.80825 * 16 15 14 45 45 H 1.08999 * 113.61181 * 25.43284 * 17 16 15 46 46 H 1.08998 * 113.61680 * 254.52836 * 17 16 15 47 47 H 1.09002 * 113.61445 * 89.11830 * 18 17 16 48 48 H 0.96995 * 120.00146 * 23.47603 * 19 18 17 49 49 H 0.96996 * 120.00281 * 179.97438 * 23 22 20 50 50 H 1.08992 * 113.61675 * 140.02412 * 28 18 17 51 51 H 1.09000 * 113.60973 * 270.92699 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2866 2.1375 -1.0605 5 6 2.7160 3.3506 -0.6819 6 6 2.7225 3.3888 0.6642 7 7 2.2948 2.1628 1.0974 8 6 2.1436 1.7373 2.4910 9 1 1.7795 0.7104 2.5199 10 6 3.4976 1.8189 3.1990 11 6 1.1424 2.6530 3.1981 12 6 0.8938 2.1427 4.5940 13 8 1.4618 1.1450 4.9850 14 7 0.0410 2.7955 5.4082 15 6 -0.2004 2.2997 6.7655 16 6 -1.2017 3.2154 7.4725 17 6 -1.6178 2.7141 8.8655 18 6 -1.5509 4.1796 9.3265 19 7 -0.9729 4.3489 10.6619 20 6 -1.2686 5.4641 11.3996 21 1 -1.9283 6.2185 10.9971 22 6 -0.7214 5.6243 12.6652 23 7 0.0822 4.7046 13.1560 24 14 -1.1253 7.1452 13.6718 25 1 -2.5907 7.2104 13.9037 26 1 -0.4197 7.0769 14.9767 27 1 -0.6863 8.3575 12.9350 28 6 -0.5459 4.4129 8.1860 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0014 4.1571 -1.3411 35 1 3.0120 4.2252 1.2831 36 1 3.3850 1.5027 4.2360 37 1 4.2108 1.1666 2.6952 38 1 3.8613 2.8461 3.1700 39 1 0.2045 2.6636 2.6427 40 1 1.5468 3.6641 3.2475 41 1 -0.4131 3.5936 5.0957 42 1 0.7376 2.2892 7.3206 43 1 -0.6048 1.2886 6.7165 44 1 -2.0440 3.4912 6.8382 45 1 -0.8742 2.0730 9.3390 46 1 -2.6225 2.2924 8.8957 47 1 -2.4887 4.7206 9.1995 48 1 -0.3806 3.6713 11.0235 49 1 0.4650 4.8167 14.0402 50 1 -0.6857 5.3616 7.6680 51 1 0.4902 4.2354 8.4742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100345998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:46 Heat of formation + Delta-G solvation = 19.880820 kcal Electronic energy + Delta-G solvation = -28121.410299 eV Core-core repulsion = 24249.370419 eV Total energy + Delta-G solvation = -3872.039880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.15625 -41.01774 -39.84616 -36.81172 -35.96566 -35.00731 -34.70040 -32.31470 -31.81869 -29.81892 -29.49550 -27.89601 -26.45224 -25.78347 -24.83590 -24.03057 -22.51354 -22.11187 -21.39328 -20.44128 -20.18566 -19.05571 -18.50103 -17.59254 -17.15132 -16.79980 -16.62996 -16.33339 -16.01302 -15.81640 -15.48376 -15.26604 -15.05564 -14.97281 -14.67282 -14.39387 -14.29260 -14.19561 -13.87970 -13.43209 -13.23141 -13.19396 -13.10124 -12.90634 -12.84360 -12.60201 -12.54154 -12.51296 -12.24324 -12.21027 -12.08159 -11.96851 -11.58877 -11.55040 -11.12046 -11.01729 -10.83711 -10.76205 -10.56982 -10.05709 -9.28285 -8.97101 -7.94380 -5.22576 1.10597 1.47354 1.49995 1.56170 1.56567 1.65418 2.19784 2.30809 2.56901 3.37380 3.38872 3.49148 3.63339 3.69088 3.76163 3.79183 3.90074 3.96331 4.09701 4.23867 4.26939 4.35858 4.36256 4.41313 4.43427 4.47046 4.50428 4.58117 4.66300 4.67730 4.77608 4.82743 4.86407 4.98423 4.99333 4.99823 5.06604 5.08401 5.14850 5.23974 5.28808 5.37610 5.42529 5.45904 5.53725 5.74424 5.87412 6.26031 6.27913 6.53168 7.18138 7.21874 7.33461 8.12454 8.33571 9.28787 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.001725 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.226666 B =16228.100725 C =16607.229638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.197 3.803 4 N -0.529 5.529 5 C -0.054 4.054 6 C -0.050 4.050 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.107 0.893 10 C -0.162 4.162 11 C -0.141 4.141 12 C 0.516 3.484 13 O -0.575 6.575 14 N -0.712 5.712 15 C 0.139 3.861 16 C -0.094 4.094 17 C -0.137 4.137 18 C 0.141 3.859 19 N -0.730 5.730 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.080 4.080 23 N -0.972 5.972 24 Si 0.973 3.027 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.278 1.278 28 C -0.152 4.152 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.416 0.584 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.067 0.933 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -5.910 -28.302 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.066 4.066 4 N -0.248 5.248 5 C -0.201 4.201 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.125 0.875 10 C -0.219 4.219 11 C -0.181 4.181 12 C 0.303 3.697 13 O -0.456 6.456 14 N -0.364 5.364 15 C 0.015 3.985 16 C -0.113 4.113 17 C -0.176 4.176 18 C 0.031 3.969 19 N -0.368 5.368 20 C -0.375 4.375 21 H 0.097 0.903 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.802 3.198 25 H -0.203 1.203 26 H -0.225 1.225 27 H -0.204 1.204 28 C -0.193 4.193 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.198 0.802 35 H 0.215 0.785 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.253 0.747 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.139 0.861 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.203 0.797 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.932 -6.730 -28.598 29.394 hybrid contribution 0.347 1.250 1.803 2.221 sum 1.279 -5.481 -26.795 27.380 Atomic orbital electron populations 1.21697 0.93153 1.03224 1.01814 1.20088 0.97064 0.86429 1.04538 1.23677 1.03996 0.97467 0.81414 1.70213 1.19557 1.05504 1.29561 1.22646 1.07282 0.96267 0.93939 1.23045 1.08230 0.90319 0.96633 1.45649 1.48517 1.11720 1.06996 1.21119 0.97203 0.99889 0.77078 0.87513 1.22210 0.94689 1.03132 1.01889 1.21937 1.02102 1.01945 0.92127 1.20629 0.78357 0.83249 0.87462 1.90709 1.50270 1.27306 1.77278 1.45900 1.45564 1.30973 1.13947 1.21210 0.98099 0.97516 0.81688 1.22509 0.98381 0.95529 0.94924 1.23311 1.01676 0.97233 0.95415 1.21982 0.95584 0.95603 0.83707 1.42627 1.55801 1.23122 1.15249 1.19688 1.22300 0.98530 0.96935 0.90342 1.25595 1.00828 1.01543 0.99232 1.69814 1.37457 1.36739 1.18220 0.85219 0.77613 0.79418 0.77565 1.20308 1.22487 1.20370 1.23759 0.99166 0.97977 0.98397 0.92955 0.92929 0.89988 0.88687 0.89376 0.80184 0.78475 0.90030 0.92309 0.91148 0.86511 0.85929 0.74683 0.93392 0.91511 0.86071 0.91479 0.90398 0.90356 0.79667 0.94137 0.91403 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.04 -0.56 6.08 29.85 0.18 -0.38 16 3 C 0.20 3.62 7.16 138.13 0.99 4.61 16 4 N -0.53 -11.91 11.25 -188.13 -2.12 -14.03 16 5 C -0.05 -0.98 11.87 83.52 0.99 0.01 16 6 C -0.05 -0.70 10.70 83.09 0.89 0.19 16 7 N -0.45 -6.73 2.61 -491.91 -1.28 -8.01 16 8 C 0.15 2.00 2.64 44.99 0.12 2.12 16 9 H 0.11 1.55 6.48 -2.39 -0.02 1.53 16 10 C -0.16 -2.40 9.00 71.98 0.65 -1.75 16 11 C -0.14 -1.46 5.18 29.85 0.15 -1.31 16 12 C 0.52 8.77 7.55 87.66 0.66 9.43 16 13 O -0.58 -14.36 13.96 -3.04 -0.04 -14.40 16 14 N -0.71 -10.89 5.56 -463.06 -2.57 -13.46 16 15 C 0.14 2.90 5.51 86.38 0.48 3.37 16 16 C -0.09 -2.00 3.76 -10.18 -0.04 -2.04 16 17 C -0.14 -3.87 7.39 31.12 0.23 -3.64 16 18 C 0.14 5.04 4.47 45.52 0.20 5.24 16 19 N -0.73 -35.80 5.41 -320.44 -1.73 -37.53 16 20 C -0.24 -13.17 9.97 84.03 0.84 -12.33 16 21 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 23 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 24 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 28 C -0.15 -4.44 7.45 31.21 0.23 -4.20 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 0.97 7.08 -2.38 -0.02 0.96 16 34 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.08 1.56 5.95 -2.39 -0.01 1.55 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.88 7.96 -2.39 -0.02 0.86 16 39 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.12 0.84 8.08 -2.38 -0.02 0.82 16 41 H 0.42 3.96 8.47 -92.71 -0.79 3.18 16 42 H 0.05 1.25 7.85 -2.39 -0.02 1.24 16 43 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 48 H 0.37 19.87 7.91 -92.71 -0.73 19.13 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.06 1.90 7.90 -2.39 -0.02 1.89 16 Total: -1.00 -73.30 414.36 1.72 -71.57 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.59 Total: 33.01 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 7.75 Total: -5.64 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -7.42 Total: -132.03 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.04 Total: -14.40 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.30 1.72 -71.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100345998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.456 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds