Wall clock time and date at job start Tue Mar 31 2020 17:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46741 * 2 1 4 4 C 1.38043 * 126.29034 * 269.99786 * 3 2 1 5 5 C 1.47427 * 126.41721 * 359.96514 * 4 3 2 6 6 O 1.21603 * 119.99934 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00433 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00316 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46857 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47006 * 179.97438 * 9 8 7 11 11 H 1.09005 * 110.63590 * 51.85907 * 10 9 8 12 12 C 1.54337 * 111.00569 * 288.78250 * 10 9 8 13 13 N 1.47015 * 107.26507 * 219.59972 * 12 10 9 14 14 C 1.36937 * 125.64768 * 178.84634 * 13 12 10 15 15 H 1.07996 * 119.99824 * 340.94235 * 14 13 12 16 16 C 1.38807 * 120.00250 * 161.21713 * 14 13 12 17 17 N 1.31620 * 120.00450 * 157.60272 * 16 14 13 18 18 Si 1.86801 * 119.99892 * 337.60961 * 16 14 13 19 19 H 1.48500 * 109.47209 * 84.53337 * 18 16 14 20 20 H 1.48506 * 109.47109 * 204.53340 * 18 16 14 21 21 H 1.48497 * 109.47176 * 324.53007 * 18 16 14 22 22 C 1.47427 * 108.70568 * 358.58089 * 13 12 10 23 23 C 1.54914 * 104.83009 * 24.35900 * 22 13 12 24 24 H 1.09007 * 111.00378 * 81.06227 * 23 22 13 25 25 C 1.52998 * 111.00145 * 204.87596 * 23 22 13 26 26 C 1.41287 * 107.17023 * 180.22397 * 4 3 2 27 27 N 1.30455 * 108.02415 * 359.59736 * 26 4 3 28 28 N 1.34254 * 126.29031 * 89.98573 * 3 2 1 29 29 C 1.46503 * 125.75376 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.47074 * 299.99929 * 1 2 3 31 31 H 1.08996 * 109.47188 * 59.99838 * 1 2 3 32 32 H 1.09002 * 109.46852 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46777 * 240.00500 * 2 1 3 34 34 H 1.08996 * 109.47188 * 120.00162 * 2 1 3 35 35 H 0.97004 * 119.99395 * 359.97438 * 7 5 4 36 36 H 1.08994 * 109.46946 * 59.99649 * 8 7 5 37 37 H 1.09002 * 109.46746 * 299.99680 * 8 7 5 38 38 H 1.08994 * 109.47558 * 60.00110 * 9 8 7 39 39 H 1.09002 * 109.47253 * 299.99457 * 9 8 7 40 40 H 1.08994 * 109.98977 * 100.12069 * 12 10 9 41 41 H 1.08996 * 109.77507 * 338.95612 * 12 10 9 42 42 H 0.97000 * 120.00315 * 179.97438 * 17 16 14 43 43 H 1.08999 * 110.36487 * 143.19046 * 22 13 12 44 44 H 1.08995 * 110.37008 * 265.51818 * 22 13 12 45 45 H 1.08995 * 109.47287 * 58.54469 * 25 23 22 46 46 H 1.08999 * 109.47052 * 178.54557 * 25 23 22 47 47 H 1.08997 * 109.46887 * 298.54352 * 25 23 22 48 48 H 1.08003 * 125.99426 * 179.73312 * 26 4 3 49 49 H 1.08997 * 109.46673 * 90.01137 * 29 28 3 50 50 H 1.09002 * 109.47014 * 210.00533 * 29 28 3 51 51 H 1.08994 * 109.47198 * 330.00350 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3046 2.1912 -1.1127 5 6 2.1593 1.7778 -2.5203 6 8 1.7651 0.6589 -2.7878 7 7 2.4634 2.6398 -3.5108 8 6 2.3195 2.2287 -4.9095 9 6 2.7265 3.3849 -5.8252 10 6 2.5768 2.9554 -7.2860 11 1 1.5828 2.5460 -7.4662 12 6 3.6628 1.9302 -7.6753 13 7 4.1043 2.2586 -9.0386 14 6 5.0757 1.5993 -9.7434 15 1 5.7928 0.9800 -9.2250 16 6 5.1423 1.7313 -11.1236 17 7 6.2726 1.4914 -11.7540 18 14 3.6278 2.2497 -12.0864 19 1 3.5217 3.7309 -12.0826 20 1 3.7409 1.7651 -13.4856 21 1 2.4167 1.6650 -11.4565 22 6 3.3237 3.4114 -9.5235 23 6 2.8615 4.1455 -8.2400 24 1 3.6549 4.7808 -7.8461 25 6 1.5910 4.9572 -8.5000 26 6 2.7545 3.4480 -0.6499 27 7 2.7407 3.4265 0.6544 28 7 2.2969 2.1702 1.0821 29 6 2.1465 1.7443 2.4758 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.7775 3.5324 -3.2974 36 1 1.2814 1.9596 -5.1041 37 1 2.9604 1.3685 -5.1031 38 1 3.7645 3.6545 -5.6307 39 1 2.0853 4.2448 -5.6315 40 1 3.2488 0.9222 -7.6524 41 1 4.5035 2.0036 -6.9855 42 1 6.3190 1.5833 -12.7185 43 1 3.9502 4.0656 -10.1299 44 1 2.4617 3.0715 -10.0974 45 1 0.8013 4.2934 -8.8518 46 1 1.2739 5.4415 -7.5765 47 1 1.7926 5.7151 -9.2570 48 1 3.0549 4.2815 -1.2676 49 1 3.0783 1.2967 2.8214 50 1 1.9065 2.6081 3.0958 51 1 1.3429 1.0114 2.5471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103183338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:51 Heat of formation + Delta-G solvation = 21.055782 kcal Electronic energy + Delta-G solvation = -28677.291679 eV Core-core repulsion = 24805.302748 eV Total energy + Delta-G solvation = -3871.988930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.50853 -40.36002 -39.75864 -36.48014 -35.37939 -34.90111 -33.94739 -33.05113 -32.48963 -30.40095 -29.01071 -27.89428 -27.38694 -25.72042 -24.74320 -23.55989 -23.12224 -21.89459 -21.48855 -20.88141 -20.39899 -18.91300 -18.54143 -17.13806 -16.91472 -16.85030 -16.82577 -16.47113 -16.07584 -15.55016 -15.35994 -15.23344 -15.11665 -14.68737 -14.61059 -14.45367 -14.31343 -14.19896 -13.72668 -13.61809 -13.47227 -13.34545 -13.21854 -12.94636 -12.88693 -12.71661 -12.62203 -12.45509 -12.26586 -12.17713 -12.08420 -11.72159 -11.68377 -11.42912 -11.27808 -11.20949 -10.81220 -10.76833 -10.41471 -10.08551 -9.56498 -9.03825 -8.19299 -5.45042 0.49416 1.16367 1.28014 1.36724 1.40312 1.46077 2.35527 2.39983 2.49462 3.03403 3.36348 3.48578 3.52825 3.64706 3.85786 3.91371 3.93473 4.04065 4.24238 4.28124 4.30299 4.35787 4.39402 4.41534 4.48110 4.59727 4.62863 4.64231 4.66295 4.70882 4.73598 4.79360 4.83786 4.95731 4.98589 5.06360 5.09845 5.15633 5.22387 5.25334 5.28493 5.35577 5.41823 5.44617 5.56561 5.60264 5.69367 5.87631 6.09455 6.50333 6.71489 6.77586 7.38020 7.54366 8.12030 9.00901 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.002082 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.029827 B =13445.675787 C =13743.065187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C 0.158 3.842 4 C -0.321 4.321 5 C 0.590 3.410 6 O -0.585 6.585 7 N -0.714 5.714 8 C 0.127 3.873 9 C -0.101 4.101 10 C -0.080 4.080 11 H 0.085 0.915 12 C 0.132 3.868 13 N -0.631 5.631 14 C -0.235 4.235 15 H 0.056 0.944 16 C -0.040 4.040 17 N -0.957 5.957 18 Si 0.949 3.051 19 H -0.266 1.266 20 H -0.307 1.307 21 H -0.273 1.273 22 C 0.106 3.894 23 C -0.088 4.088 24 H 0.087 0.913 25 C -0.135 4.135 26 C 0.087 3.913 27 N -0.324 5.324 28 N -0.361 5.361 29 C 0.083 3.917 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.413 0.587 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.018 0.982 41 H 0.032 0.968 42 H 0.262 0.738 43 H 0.035 0.965 44 H 0.020 0.980 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.056 0.944 48 H 0.218 0.782 49 H 0.093 0.907 50 H 0.102 0.898 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 6.252 30.780 34.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C 0.023 3.977 4 C -0.336 4.336 5 C 0.378 3.622 6 O -0.466 6.466 7 N -0.365 5.365 8 C 0.003 3.997 9 C -0.139 4.139 10 C -0.099 4.099 11 H 0.103 0.897 12 C 0.007 3.993 13 N -0.357 5.357 14 C -0.364 4.364 15 H 0.073 0.927 16 C -0.234 4.234 17 N -0.604 5.604 18 Si 0.777 3.223 19 H -0.192 1.192 20 H -0.235 1.235 21 H -0.198 1.198 22 C -0.019 4.019 23 C -0.107 4.107 24 H 0.106 0.894 25 C -0.192 4.192 26 C -0.100 4.100 27 N -0.143 5.143 28 N -0.140 5.140 29 C -0.057 4.057 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.250 0.750 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.036 0.964 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.234 0.766 49 H 0.111 0.889 50 H 0.121 0.879 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.622 6.065 31.669 35.405 hybrid contribution 0.116 -0.413 -1.911 1.959 sum -14.506 5.651 29.758 33.584 Atomic orbital electron populations 1.21596 0.92735 1.03253 1.01651 1.20481 0.97572 0.87554 1.05129 1.21834 0.93967 0.95359 0.86505 1.20051 1.22821 0.97692 0.93042 1.17467 0.76155 0.84007 0.84524 1.90724 1.49155 1.21856 1.84883 1.45621 1.68073 1.17384 1.05442 1.21264 1.01120 0.97710 0.79634 1.21643 1.03326 0.97815 0.91116 1.22108 0.98264 0.94662 0.94878 0.89661 1.21650 0.95554 0.96730 0.85343 1.44946 1.42689 1.33345 1.14724 1.18605 1.03762 1.24572 0.89471 0.92666 1.25661 0.99525 1.01074 0.97175 1.69972 1.25804 1.55615 1.09029 0.85908 0.81146 0.78610 0.76619 1.19208 1.23544 1.19842 1.22166 0.93608 0.88782 0.97332 1.22323 0.99165 0.95698 0.93514 0.89449 1.21704 0.95231 0.99392 1.02921 1.24468 0.96136 0.97433 0.91969 1.77147 1.22939 1.00399 1.13811 1.48675 1.48728 1.09048 1.07520 1.22373 1.04991 1.02974 0.75323 0.91599 0.94194 0.90180 0.89391 0.87881 0.74990 0.91828 0.93522 0.90571 0.87860 0.96377 0.95037 0.92874 0.94699 0.96252 0.92845 0.89400 0.92510 0.76550 0.88897 0.87928 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.89 71.98 0.71 -1.07 16 2 C -0.07 -1.03 5.39 29.85 0.16 -0.87 16 3 C 0.16 2.88 6.26 42.14 0.26 3.14 16 4 C -0.32 -6.64 6.13 -20.15 -0.12 -6.76 16 5 C 0.59 14.41 7.81 86.66 0.68 15.09 16 6 O -0.58 -18.42 14.84 -4.04 -0.06 -18.48 16 7 N -0.71 -13.77 5.55 -466.39 -2.59 -16.35 16 8 C 0.13 2.83 5.56 86.38 0.48 3.31 16 9 C -0.10 -1.97 4.74 30.59 0.14 -1.82 16 10 C -0.08 -2.22 2.38 -9.60 -0.02 -2.24 16 11 H 0.09 2.28 8.02 -2.38 -0.02 2.26 16 12 C 0.13 5.20 6.25 86.73 0.54 5.74 16 13 N -0.63 -31.36 3.21 -691.99 -2.22 -33.57 16 14 C -0.24 -14.17 10.57 84.03 0.89 -13.28 16 15 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 16 C -0.04 -2.46 5.43 84.86 0.46 -2.00 16 17 N -0.96 -62.32 13.97 21.65 0.30 -62.01 16 18 Si 0.95 48.64 24.27 68.60 1.66 50.30 16 19 H -0.27 -12.71 6.49 99.48 0.65 -12.06 16 20 H -0.31 -15.79 7.11 99.48 0.71 -15.09 16 21 H -0.27 -13.63 6.66 99.48 0.66 -12.97 16 22 C 0.11 4.49 4.16 86.86 0.36 4.86 16 23 C -0.09 -2.58 3.09 -9.40 -0.03 -2.61 16 24 H 0.09 2.45 8.05 -2.38 -0.02 2.43 16 25 C -0.13 -2.96 9.30 71.98 0.67 -2.29 16 26 C 0.09 1.46 11.50 85.65 0.99 2.45 16 27 N -0.32 -6.11 12.50 -56.27 -0.70 -6.81 16 28 N -0.36 -5.64 3.98 -354.31 -1.41 -7.05 16 29 C 0.08 0.51 11.06 127.77 1.41 1.92 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.83 6.50 -2.38 -0.02 1.82 16 34 H 0.10 0.90 7.70 -2.39 -0.02 0.88 16 35 H 0.41 5.14 7.43 -92.71 -0.69 4.45 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.30 7.69 -2.39 -0.02 1.28 16 38 H 0.08 1.49 7.95 -2.39 -0.02 1.48 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.03 1.24 7.70 -2.39 -0.02 1.23 16 42 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 43 H 0.03 1.62 6.64 -2.39 -0.02 1.60 16 44 H 0.02 0.87 5.47 -2.39 -0.01 0.85 16 45 H 0.05 1.20 8.11 -2.39 -0.02 1.18 16 46 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.22 1.94 7.50 -2.91 -0.02 1.92 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.11 0.17 7.62 -2.39 -0.02 0.15 16 Total: -1.00 -83.64 402.24 2.69 -80.95 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.12 Total: 9.47 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 7.58 Total: 3.56 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -6.62 Total: -125.81 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.06 Total: -18.48 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.66 Total: 50.30 kcal Total: -83.64 2.69 -80.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103183338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.006 kcal (2) G-P(sol) polarization free energy of solvation -83.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds