Wall clock time and date at job start Tue Mar 31 2020 19:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 C 1.50703 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.35372 * 126.38043 * 84.99951 * 4 3 2 6 6 C 1.41504 * 105.49938 * 180.02562 * 5 4 3 7 7 C 1.47709 * 126.51764 * 180.02562 * 6 5 4 8 8 O 1.21575 * 119.99947 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99579 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46707 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47125 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.63496 * 51.85936 * 12 11 10 14 14 C 1.54335 * 111.00070 * 288.78390 * 12 11 10 15 15 N 1.47022 * 107.26195 * 219.59791 * 14 12 11 16 16 C 1.36935 * 125.64427 * 178.84992 * 15 14 12 17 17 H 1.08000 * 120.00518 * 359.44761 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.71412 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00888 * 20 18 16 22 22 H 1.48503 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00497 * 20 18 16 24 24 C 1.47426 * 108.70625 * 358.58545 * 15 14 12 25 25 C 1.54912 * 104.82994 * 24.35934 * 24 15 14 26 26 H 1.08995 * 111.00742 * 81.05954 * 25 24 15 27 27 C 1.52998 * 111.00086 * 204.87731 * 25 24 15 28 28 N 1.31809 * 106.96196 * 0.26142 * 6 5 4 29 29 N 1.28467 * 110.07337 * 359.56002 * 28 6 5 30 30 H 0.97005 * 124.88047 * 180.16105 * 29 28 6 31 31 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47185 * 299.99889 * 1 2 3 33 33 H 1.09004 * 109.47386 * 59.99741 * 1 2 3 34 34 H 1.09000 * 109.47185 * 240.00111 * 2 1 3 35 35 H 1.08992 * 109.47436 * 119.99858 * 2 1 3 36 36 H 1.09000 * 109.47035 * 60.00020 * 3 2 1 37 37 H 1.09004 * 109.47237 * 300.00350 * 3 2 1 38 38 H 1.07998 * 127.25003 * 0.02562 * 5 4 3 39 39 H 0.96996 * 120.00291 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.46669 * 60.00382 * 10 9 7 41 41 H 1.08993 * 109.46871 * 299.99995 * 10 9 7 42 42 H 1.09009 * 109.47210 * 60.00549 * 11 10 9 43 43 H 1.09003 * 109.47538 * 300.00244 * 11 10 9 44 44 H 1.09007 * 109.99076 * 100.12594 * 14 12 11 45 45 H 1.09002 * 109.78210 * 338.95588 * 14 12 11 46 46 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 47 47 H 1.08998 * 110.36404 * 143.19245 * 24 15 14 48 48 H 1.08995 * 110.36566 * 265.51629 * 24 15 14 49 49 H 1.08996 * 109.47303 * 58.54471 * 27 25 24 50 50 H 1.09006 * 109.46537 * 178.54319 * 27 25 24 51 51 H 1.08996 * 109.47165 * 298.54472 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3504 1.3475 -1.0847 6 6 5.6723 1.3910 -0.5817 7 6 6.9170 1.3218 -1.3740 8 8 6.8623 1.2162 -2.5839 9 7 8.1133 1.3759 -0.7556 10 6 9.3478 1.3068 -1.5414 11 6 10.5542 1.3895 -0.6041 12 6 11.8436 1.3166 -1.4247 13 1 11.8282 2.0508 -2.2302 14 6 12.0596 -0.1029 -1.9905 15 7 13.4951 -0.4016 -1.8831 16 6 14.0965 -1.5736 -2.2569 17 1 13.5033 -2.3795 -2.6632 18 6 15.4681 -1.7282 -2.1084 19 7 16.1903 -0.7483 -1.6080 20 14 16.2883 -3.3273 -2.6177 21 1 16.0553 -3.5641 -4.0650 22 1 17.7479 -3.2392 -2.3588 23 1 15.7138 -4.4499 -1.8336 24 6 14.1808 0.7721 -1.3123 25 6 13.0846 1.5237 -0.5167 26 1 12.9322 1.0701 0.4626 27 6 13.4254 3.0092 -0.3827 28 7 5.5816 1.4997 0.7288 29 7 4.3476 1.5369 1.0838 30 1 4.0358 1.6167 1.9989 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9564 -0.8900 38 1 4.0465 1.2574 -2.1171 39 1 8.1569 1.4606 0.2097 40 1 9.3774 2.1385 -2.2454 41 1 9.3771 0.3653 -2.0898 42 1 10.5248 0.5580 0.1002 43 1 10.5246 2.3312 -0.0560 44 1 11.7507 -0.1386 -3.0353 45 1 11.4863 -0.8237 -1.4075 46 1 17.1486 -0.8564 -1.5039 47 1 14.9834 0.4556 -0.6461 48 1 14.5742 1.4054 -2.1074 49 1 13.5304 3.4488 -1.3745 50 1 12.6269 3.5178 0.1576 51 1 14.3617 3.1192 0.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103298379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:25 Heat of formation + Delta-G solvation = 11.014652 kcal Electronic energy + Delta-G solvation = -27864.676114 eV Core-core repulsion = 23992.251768 eV Total energy + Delta-G solvation = -3872.424346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.72038 -40.56675 -39.66054 -36.50084 -36.22502 -35.00989 -33.18309 -32.53061 -32.27903 -31.76663 -28.60456 -27.53246 -27.30799 -25.99590 -24.67598 -23.28653 -22.84404 -21.93836 -21.48598 -21.15118 -20.51612 -18.86771 -18.68239 -17.96850 -17.15052 -16.95431 -16.76787 -16.32781 -15.93663 -15.82299 -15.58756 -15.18121 -14.87834 -14.73723 -14.55941 -14.50812 -14.16709 -13.95437 -13.68048 -13.48045 -13.34819 -13.05016 -12.86463 -12.76163 -12.72195 -12.45862 -12.41034 -12.20135 -12.12373 -11.97493 -11.92762 -11.77929 -11.54773 -11.46776 -11.33265 -11.23939 -10.93598 -10.72343 -10.51946 -10.07921 -9.95763 -8.86158 -7.76143 -5.20614 0.47695 1.08511 1.44838 1.48423 1.54846 1.84302 2.22353 2.32771 2.49778 3.31713 3.35256 3.65040 3.71145 3.75090 3.91687 3.96253 4.08079 4.16957 4.19883 4.31653 4.35677 4.46323 4.52656 4.55411 4.64626 4.69509 4.73953 4.80293 4.84708 4.85807 4.94816 4.99058 5.02505 5.04232 5.12984 5.19481 5.23665 5.28770 5.31344 5.35291 5.38989 5.42366 5.46471 5.48106 5.55906 5.78005 5.86804 6.07934 6.33529 6.44263 6.85134 7.12713 7.13556 7.80753 8.45030 9.24867 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.001800 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.542428 B =15554.895170 C =16427.132635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.046 4.046 4 C 0.038 3.962 5 C -0.200 4.200 6 C -0.035 4.035 7 C 0.596 3.404 8 O -0.574 6.574 9 N -0.704 5.704 10 C 0.124 3.876 11 C -0.100 4.100 12 C -0.078 4.078 13 H 0.079 0.921 14 C 0.133 3.867 15 N -0.629 5.629 16 C -0.243 4.243 17 H 0.076 0.924 18 C -0.067 4.067 19 N -0.947 5.947 20 Si 0.980 3.020 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.160 3.840 25 C -0.101 4.101 26 H 0.071 0.929 27 C -0.126 4.126 28 N -0.264 5.264 29 N -0.361 5.361 30 H 0.462 0.538 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.159 0.841 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.012 0.988 45 H 0.025 0.975 46 H 0.247 0.753 47 H 0.069 0.931 48 H -0.017 1.017 49 H 0.048 0.952 50 H 0.079 0.921 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.892 9.063 10.236 34.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.085 4.085 4 C -0.089 4.089 5 C -0.228 4.228 6 C -0.195 4.195 7 C 0.382 3.618 8 O -0.452 6.452 9 N -0.355 5.355 10 C 0.000 4.000 11 C -0.138 4.138 12 C -0.097 4.097 13 H 0.097 0.903 14 C 0.008 3.992 15 N -0.355 5.355 16 C -0.372 4.372 17 H 0.094 0.906 18 C -0.260 4.260 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.036 3.964 25 C -0.121 4.121 26 H 0.089 0.911 27 C -0.184 4.184 28 N -0.101 5.101 29 N -0.078 5.078 30 H 0.310 0.690 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.177 0.823 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.001 0.999 49 H 0.068 0.932 50 H 0.098 0.902 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -31.022 8.963 10.285 33.890 hybrid contribution 0.527 -1.097 -0.600 1.357 sum -30.496 7.866 9.685 32.949 Atomic orbital electron populations 1.21762 0.94273 1.02172 1.02677 1.21519 0.96781 0.95298 1.02275 1.20373 0.83617 0.98633 1.05896 1.21775 0.96319 1.04576 0.86205 1.21682 0.90315 1.09985 1.00845 1.21754 0.94974 1.12156 0.90592 1.17237 0.82674 0.75837 0.86094 1.90780 1.87484 1.51950 1.14987 1.45793 1.04778 1.73070 1.11855 1.21382 0.82408 1.01803 0.94388 1.21628 0.90730 1.04049 0.97357 1.22048 0.94350 0.95528 0.97820 0.90274 1.21577 0.85129 0.95584 0.96917 1.44838 1.03238 1.13446 1.73945 1.19424 0.91318 0.91891 1.34550 0.90623 1.25632 0.96726 1.01436 1.02183 1.70064 1.05268 1.32603 1.51752 0.85130 0.77031 0.79025 0.78010 1.20671 1.21626 1.20280 1.21778 0.94463 0.85910 0.94298 1.22477 0.94808 0.96837 0.97958 0.91099 1.21592 1.01728 0.93458 1.01623 1.73469 1.03095 1.19427 1.14130 1.43405 1.02078 1.51434 1.10932 0.69003 0.92704 0.91575 0.92109 0.92538 0.91987 0.87879 0.88085 0.82338 0.74670 0.91340 0.92864 0.90967 0.88465 0.96987 0.95746 0.94348 0.91327 0.99918 0.93250 0.90194 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 71.98 0.71 0.06 16 2 C -0.12 -0.75 5.92 30.59 0.18 -0.57 16 3 C -0.05 -0.23 5.77 29.85 0.17 -0.06 16 4 C 0.04 0.46 6.48 41.41 0.27 0.73 16 5 C -0.20 -3.92 10.73 22.41 0.24 -3.68 16 6 C -0.04 -0.83 7.13 42.46 0.30 -0.53 16 7 C 0.60 17.12 7.82 86.75 0.68 17.80 16 8 O -0.57 -20.71 16.93 -3.95 -0.07 -20.78 16 9 N -0.70 -17.18 5.55 -466.10 -2.59 -19.77 16 10 C 0.12 3.29 5.56 86.38 0.48 3.77 16 11 C -0.10 -2.49 4.74 30.59 0.14 -2.34 16 12 C -0.08 -2.61 2.38 -9.60 -0.02 -2.63 16 13 H 0.08 2.58 8.02 -2.39 -0.02 2.56 16 14 C 0.13 5.78 6.25 86.73 0.54 6.32 16 15 N -0.63 -34.06 3.39 -691.95 -2.35 -36.40 16 16 C -0.24 -14.30 10.27 84.04 0.86 -13.44 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 19 N -0.95 -58.00 10.09 21.65 0.22 -57.79 16 20 Si 0.98 47.24 29.55 68.60 2.03 49.26 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C 0.16 8.14 5.36 86.86 0.47 8.60 16 25 C -0.10 -3.71 3.09 -9.40 -0.03 -3.74 16 26 H 0.07 2.57 8.05 -2.39 -0.02 2.55 16 27 C -0.13 -3.68 9.30 71.98 0.67 -3.01 16 28 N -0.26 -4.95 11.92 -48.17 -0.57 -5.52 16 29 N -0.36 -4.12 6.83 -47.93 -0.33 -4.45 16 30 H 0.46 1.53 8.96 -219.99 -1.97 -0.44 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.15 8.14 -2.39 -0.02 0.14 16 33 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 39 H 0.42 8.24 8.20 -92.71 -0.76 7.48 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.65 7.69 -2.39 -0.02 1.63 16 42 H 0.07 1.83 7.95 -2.38 -0.02 1.81 16 43 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.02 1.05 7.70 -2.39 -0.02 1.03 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.07 3.97 5.87 -2.39 -0.01 3.96 16 48 H -0.02 -0.94 8.04 -2.39 -0.02 -0.96 16 49 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 50 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 51 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -78.40 412.27 0.67 -77.73 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -1.81 Total: 13.92 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.14 Total: 3.79 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -5.62 Total: -123.93 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.07 Total: -20.78 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -78.40 0.67 -77.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103298379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.749 kcal (2) G-P(sol) polarization free energy of solvation -78.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds