Wall clock time and date at job start Tue Mar 31 2020 17:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46946 * 2 1 4 4 C 1.39674 * 126.06733 * 125.00114 * 3 2 1 5 5 C 1.38404 * 105.36083 * 179.97438 * 4 3 2 6 6 C 1.47164 * 126.88389 * 180.02562 * 5 4 3 7 7 O 1.21622 * 120.00100 * 175.40704 * 6 5 4 8 8 N 1.34775 * 120.00020 * 355.40719 * 6 5 4 9 9 C 1.46498 * 120.00119 * 175.41749 * 8 6 5 10 10 C 1.52999 * 109.47542 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47458 * 180.02562 * 10 9 8 12 12 H 1.09003 * 110.64312 * 51.85906 * 11 10 9 13 13 C 1.54338 * 111.00115 * 288.78209 * 11 10 9 14 14 N 1.47019 * 107.26516 * 219.59923 * 13 11 10 15 15 C 1.36938 * 125.64931 * 178.84808 * 14 13 11 16 16 H 1.07997 * 119.99464 * 359.44269 * 15 14 13 17 17 C 1.38815 * 120.00078 * 179.72154 * 15 14 13 18 18 N 1.31618 * 120.00073 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99690 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47326 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47248 * 119.99799 * 19 17 15 22 22 H 1.48503 * 109.46727 * 239.99641 * 19 17 15 23 23 C 1.47427 * 108.70305 * 358.58875 * 14 13 11 24 24 C 1.54912 * 104.83393 * 24.35354 * 23 14 13 25 25 H 1.09000 * 111.00442 * 81.06734 * 24 23 14 26 26 C 1.52996 * 111.00242 * 204.88257 * 24 23 14 27 27 N 1.36595 * 106.23249 * 0.25871 * 5 4 3 28 28 C 1.46495 * 125.19307 * 179.73732 * 27 5 4 29 29 N 1.28451 * 109.61910 * 359.56036 * 27 5 4 30 30 H 1.09001 * 109.47073 * 299.99148 * 1 2 3 31 31 H 1.09004 * 109.47527 * 59.99527 * 1 2 3 32 32 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47073 * 240.00852 * 2 1 3 34 34 H 1.08991 * 109.47530 * 120.00266 * 2 1 3 35 35 H 1.08009 * 127.31996 * 359.94633 * 4 3 2 36 36 H 0.97002 * 119.99895 * 355.42524 * 8 6 5 37 37 H 1.09009 * 109.46815 * 60.00449 * 9 8 6 38 38 H 1.08998 * 109.47485 * 300.00730 * 9 8 6 39 39 H 1.08997 * 109.46761 * 59.99949 * 10 9 8 40 40 H 1.09006 * 109.46996 * 300.00883 * 10 9 8 41 41 H 1.08997 * 109.99142 * 100.12638 * 13 11 10 42 42 H 1.08996 * 109.77792 * 338.95693 * 13 11 10 43 43 H 0.97000 * 120.00036 * 179.97438 * 18 17 15 44 44 H 1.09001 * 110.36768 * 143.19340 * 23 14 13 45 45 H 1.09002 * 110.36335 * 265.51723 * 23 14 13 46 46 H 1.09002 * 109.47567 * 58.54578 * 26 24 23 47 47 H 1.09002 * 109.47000 * 178.54573 * 26 24 23 48 48 H 1.09002 * 109.47135 * 298.54468 * 26 24 23 49 49 H 1.09006 * 109.46987 * 86.07775 * 28 27 5 50 50 H 1.08997 * 109.47431 * 206.07327 * 28 27 5 51 51 H 1.08998 * 109.47436 * 326.07756 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9170 1.9803 0.9248 5 6 3.0843 3.2943 0.5236 6 6 3.9255 4.3147 1.1693 7 8 4.0466 5.4132 0.6616 8 7 4.5618 4.0318 2.3232 9 6 5.4779 5.0108 2.9136 10 6 6.0629 4.4453 4.2093 11 6 7.0192 5.4680 4.8261 12 1 6.5347 6.4399 4.9191 13 6 8.3140 5.5863 3.9945 14 7 9.4308 5.7154 4.9419 15 6 10.7540 5.8223 4.6060 16 1 11.0504 5.8066 3.5677 17 6 11.7148 5.9449 5.6004 18 7 11.3540 5.9589 6.8661 19 14 13.5198 6.0913 5.1421 20 1 13.6602 6.0501 3.6643 21 1 14.0581 7.3767 5.6552 22 1 14.2760 4.9630 5.7424 23 6 8.8896 5.7171 6.3133 24 6 7.5332 4.9767 6.2053 25 1 7.6766 3.8962 6.2065 26 6 6.5851 5.4025 7.3281 27 7 2.3080 3.4557 -0.5887 28 6 2.1728 4.6996 -1.3506 29 7 1.7175 2.3494 -0.8667 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.3731 1.4915 1.7731 36 1 4.4132 3.1800 2.7628 37 1 4.9356 5.9311 3.1307 38 1 6.2854 5.2217 2.2125 39 1 6.6053 3.5252 3.9918 40 1 5.2556 4.2340 4.9106 41 1 8.2668 6.4676 3.3549 42 1 8.4451 4.6912 3.3867 43 1 12.0254 6.0442 7.5609 44 1 9.5605 5.1835 6.9865 45 1 8.7373 6.7393 6.6597 46 1 6.4242 6.4794 7.2790 47 1 5.6315 4.8870 7.2134 48 1 7.0242 5.1442 8.2918 49 1 2.9739 4.7635 -2.0871 50 1 1.2093 4.7107 -1.8601 51 1 2.2347 5.5501 -0.6718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103569439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:01 Heat of formation + Delta-G solvation = 46.627000 kcal Electronic energy + Delta-G solvation = -28402.600548 eV Core-core repulsion = 24531.720469 eV Total energy + Delta-G solvation = -3870.880079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.83585 -39.62109 -38.15117 -35.57237 -34.94864 -33.35797 -32.25794 -31.56820 -30.75687 -30.45188 -27.31392 -26.87812 -25.68991 -24.41871 -23.73547 -23.15210 -22.06075 -21.14913 -19.97314 -19.45645 -19.16160 -17.90955 -16.86162 -16.65473 -16.45047 -15.70067 -15.59803 -15.05387 -14.64182 -14.48550 -14.35645 -14.18397 -13.94235 -13.78785 -13.54877 -13.17467 -13.00658 -12.85783 -12.77806 -12.42155 -12.09924 -12.05161 -11.81380 -11.68904 -11.60156 -11.51144 -11.13749 -11.04863 -10.85897 -10.83821 -10.76177 -10.34604 -10.08151 -9.89357 -9.82858 -9.72086 -9.49066 -9.33300 -9.19367 -9.12770 -8.63817 -6.80353 -5.63761 -3.05063 0.99703 2.09337 2.25449 2.96420 3.00809 3.40203 3.45926 3.48309 4.11886 4.27359 4.50181 4.58990 4.80068 4.87729 4.89658 4.99091 5.00055 5.06525 5.11983 5.23567 5.25618 5.36186 5.41392 5.45480 5.51834 5.54781 5.58269 5.64680 5.73836 5.77672 5.89685 5.90104 5.95420 6.10354 6.18072 6.20755 6.25815 6.28187 6.33459 6.45740 6.55790 6.61974 6.69165 6.83101 7.01854 7.20321 7.56833 7.65869 7.76835 7.88483 7.91025 8.38594 9.24423 9.85381 10.50658 11.40013 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.001995 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.234792 B =14035.186339 C =14394.500404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 C 0.025 3.975 4 C -0.186 4.186 5 C -0.034 4.034 6 C 0.588 3.412 7 O -0.540 6.540 8 N -0.711 5.711 9 C 0.119 3.881 10 C -0.117 4.117 11 C -0.092 4.092 12 H 0.073 0.927 13 C 0.139 3.861 14 N -0.606 5.606 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.158 3.842 24 C -0.115 4.115 25 H 0.068 0.932 26 C -0.133 4.133 27 N -0.257 5.257 28 C 0.088 3.912 29 N -0.275 5.275 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.161 0.839 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.251 0.749 44 H 0.105 0.895 45 H 0.011 0.989 46 H 0.050 0.950 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.379 -9.573 -9.903 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.131 4.131 4 C -0.215 4.215 5 C -0.163 4.163 6 C 0.373 3.627 7 O -0.418 6.418 8 N -0.362 5.362 9 C -0.003 4.003 10 C -0.155 4.155 11 C -0.112 4.112 12 H 0.091 0.909 13 C 0.013 3.987 14 N -0.331 5.331 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.033 3.967 24 C -0.134 4.134 25 H 0.087 0.913 26 C -0.191 4.191 27 N -0.044 5.044 28 C -0.052 4.052 29 N -0.109 5.109 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.178 0.822 36 H 0.238 0.762 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.029 0.971 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.112 0.888 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.688 -8.373 -11.231 26.664 hybrid contribution 1.409 -0.286 0.613 1.563 sum -21.279 -8.659 -10.618 25.308 Atomic orbital electron populations 1.21714 0.94586 1.01693 1.02426 1.19881 0.96181 0.88342 1.03155 1.21986 1.00149 0.96741 0.94206 1.22136 1.03645 0.92578 1.03188 1.21428 1.03445 0.96682 0.94765 1.16904 0.79160 0.85669 0.80947 1.90807 1.63560 1.23054 1.64371 1.45758 1.45563 1.21311 1.23548 1.21595 0.92109 0.91353 0.95268 1.21797 0.99087 0.99722 0.94869 1.22146 0.95010 0.97650 0.96376 0.90900 1.21375 0.87143 0.97570 0.92592 1.44513 1.01297 1.86065 1.01258 1.19135 0.80952 1.42111 0.92626 0.90510 1.24788 0.98178 1.02561 0.95333 1.69814 1.31382 1.57543 0.98390 0.86009 0.84842 0.77277 0.77464 1.20553 1.21786 1.21777 1.21970 0.89711 0.96775 0.88202 1.22629 0.98067 1.00208 0.92519 0.91349 1.21635 0.98069 1.00736 0.98662 1.45555 1.30134 1.09404 1.19304 1.22312 1.04199 0.81543 0.97111 1.73104 1.19987 0.92595 1.25198 0.92722 0.92194 0.92254 0.90443 0.89930 0.82172 0.76205 0.91074 0.90677 0.91035 0.91424 0.96288 0.95987 0.93845 0.87756 0.97073 0.93088 0.93852 0.92789 0.89587 0.88829 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.88 37.16 0.37 -0.56 16 2 C -0.04 -0.25 6.51 -27.88 -0.18 -0.43 16 3 C 0.03 0.25 6.49 -82.47 -0.54 -0.29 16 4 C -0.19 -1.75 10.42 -38.98 -0.41 -2.15 16 5 C -0.03 -0.39 6.96 -82.06 -0.57 -0.96 16 6 C 0.59 7.27 7.79 -12.64 -0.10 7.17 16 7 O -0.54 -8.16 14.86 5.26 0.08 -8.08 16 8 N -0.71 -7.42 5.54 -61.47 -0.34 -7.76 16 9 C 0.12 1.43 5.57 -4.04 -0.02 1.41 16 10 C -0.12 -1.41 4.74 -26.73 -0.13 -1.54 16 11 C -0.09 -1.49 2.38 -88.78 -0.21 -1.70 16 12 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 13 C 0.14 2.85 6.25 -3.06 -0.02 2.83 16 14 N -0.61 -15.50 3.39 -170.06 -0.58 -16.08 16 15 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 19 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 C 0.16 3.78 5.36 -2.53 -0.01 3.77 16 24 C -0.11 -2.05 3.09 -88.47 -0.27 -2.32 16 25 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 26 C -0.13 -1.98 9.30 37.16 0.35 -1.64 16 27 N -0.26 -2.88 3.75 -63.89 -0.24 -3.12 16 28 C 0.09 0.76 10.65 59.84 0.64 1.39 16 29 N -0.28 -3.12 11.87 33.64 0.40 -2.72 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.42 8.12 -51.93 -0.42 -0.01 16 35 H 0.16 1.02 7.61 -52.48 -0.40 0.62 16 36 H 0.40 3.12 7.54 -40.82 -0.31 2.81 16 37 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 39 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.10 2.83 5.88 -51.93 -0.31 2.52 16 45 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 46 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.11 0.97 6.66 -51.93 -0.35 0.63 16 LS Contribution 408.57 15.07 6.16 6.16 Total: -1.00 -33.57 408.57 -9.21 -42.77 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.86 Total: -0.18 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.36 Total: -1.81 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.20 Total: -56.04 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.57 -9.21 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103569439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.402 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds