Wall clock time and date at job start Tue Mar 31 2020 17:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46946 * 2 1 4 4 C 1.39674 * 126.06733 * 125.00114 * 3 2 1 5 5 C 1.38404 * 105.36083 * 179.97438 * 4 3 2 6 6 C 1.47164 * 126.88389 * 180.02562 * 5 4 3 7 7 O 1.21622 * 120.00100 * 175.40704 * 6 5 4 8 8 N 1.34775 * 120.00020 * 355.40719 * 6 5 4 9 9 C 1.46498 * 120.00119 * 175.41749 * 8 6 5 10 10 C 1.52999 * 109.47542 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47458 * 180.02562 * 10 9 8 12 12 H 1.09003 * 110.64312 * 51.85906 * 11 10 9 13 13 C 1.54338 * 111.00115 * 288.78209 * 11 10 9 14 14 N 1.47019 * 107.26516 * 219.59923 * 13 11 10 15 15 C 1.36938 * 125.64931 * 178.84808 * 14 13 11 16 16 H 1.07997 * 119.99464 * 359.44269 * 15 14 13 17 17 C 1.38815 * 120.00078 * 179.72154 * 15 14 13 18 18 N 1.31618 * 120.00073 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99690 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47326 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47248 * 119.99799 * 19 17 15 22 22 H 1.48503 * 109.46727 * 239.99641 * 19 17 15 23 23 C 1.47427 * 108.70305 * 358.58875 * 14 13 11 24 24 C 1.54912 * 104.83393 * 24.35354 * 23 14 13 25 25 H 1.09000 * 111.00442 * 81.06734 * 24 23 14 26 26 C 1.52996 * 111.00242 * 204.88257 * 24 23 14 27 27 N 1.36595 * 106.23249 * 0.25871 * 5 4 3 28 28 C 1.46495 * 125.19307 * 179.73732 * 27 5 4 29 29 N 1.28451 * 109.61910 * 359.56036 * 27 5 4 30 30 H 1.09001 * 109.47073 * 299.99148 * 1 2 3 31 31 H 1.09004 * 109.47527 * 59.99527 * 1 2 3 32 32 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47073 * 240.00852 * 2 1 3 34 34 H 1.08991 * 109.47530 * 120.00266 * 2 1 3 35 35 H 1.08009 * 127.31996 * 359.94633 * 4 3 2 36 36 H 0.97002 * 119.99895 * 355.42524 * 8 6 5 37 37 H 1.09009 * 109.46815 * 60.00449 * 9 8 6 38 38 H 1.08998 * 109.47485 * 300.00730 * 9 8 6 39 39 H 1.08997 * 109.46761 * 59.99949 * 10 9 8 40 40 H 1.09006 * 109.46996 * 300.00883 * 10 9 8 41 41 H 1.08997 * 109.99142 * 100.12638 * 13 11 10 42 42 H 1.08996 * 109.77792 * 338.95693 * 13 11 10 43 43 H 0.97000 * 120.00036 * 179.97438 * 18 17 15 44 44 H 1.09001 * 110.36768 * 143.19340 * 23 14 13 45 45 H 1.09002 * 110.36335 * 265.51723 * 23 14 13 46 46 H 1.09002 * 109.47567 * 58.54578 * 26 24 23 47 47 H 1.09002 * 109.47000 * 178.54573 * 26 24 23 48 48 H 1.09002 * 109.47135 * 298.54468 * 26 24 23 49 49 H 1.09006 * 109.46987 * 86.07775 * 28 27 5 50 50 H 1.08997 * 109.47431 * 206.07327 * 28 27 5 51 51 H 1.08998 * 109.47436 * 326.07756 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9170 1.9803 0.9248 5 6 3.0843 3.2943 0.5236 6 6 3.9255 4.3147 1.1693 7 8 4.0466 5.4132 0.6616 8 7 4.5618 4.0318 2.3232 9 6 5.4779 5.0108 2.9136 10 6 6.0629 4.4453 4.2093 11 6 7.0192 5.4680 4.8261 12 1 6.5347 6.4399 4.9191 13 6 8.3140 5.5863 3.9945 14 7 9.4308 5.7154 4.9419 15 6 10.7540 5.8223 4.6060 16 1 11.0504 5.8066 3.5677 17 6 11.7148 5.9449 5.6004 18 7 11.3540 5.9589 6.8661 19 14 13.5198 6.0913 5.1421 20 1 13.6602 6.0501 3.6643 21 1 14.0581 7.3767 5.6552 22 1 14.2760 4.9630 5.7424 23 6 8.8896 5.7171 6.3133 24 6 7.5332 4.9767 6.2053 25 1 7.6766 3.8962 6.2065 26 6 6.5851 5.4025 7.3281 27 7 2.3080 3.4557 -0.5887 28 6 2.1728 4.6996 -1.3506 29 7 1.7175 2.3494 -0.8667 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.3731 1.4915 1.7731 36 1 4.4132 3.1800 2.7628 37 1 4.9356 5.9311 3.1307 38 1 6.2854 5.2217 2.2125 39 1 6.6053 3.5252 3.9918 40 1 5.2556 4.2340 4.9106 41 1 8.2668 6.4676 3.3549 42 1 8.4451 4.6912 3.3867 43 1 12.0254 6.0442 7.5609 44 1 9.5605 5.1835 6.9865 45 1 8.7373 6.7393 6.6597 46 1 6.4242 6.4794 7.2790 47 1 5.6315 4.8870 7.2134 48 1 7.0242 5.1442 8.2918 49 1 2.9739 4.7635 -2.0871 50 1 1.2093 4.7107 -1.8601 51 1 2.2347 5.5501 -0.6718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103569439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:59 Heat of formation + Delta-G solvation = 25.406034 kcal Electronic energy + Delta-G solvation = -28403.520758 eV Core-core repulsion = 24531.720469 eV Total energy + Delta-G solvation = -3871.800289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.58675 -40.60428 -39.66227 -36.63008 -35.67743 -35.03726 -33.15722 -32.52498 -32.41064 -31.51204 -28.52570 -27.85890 -27.38203 -25.80278 -24.30212 -24.28603 -23.30498 -21.97523 -21.45083 -20.77816 -20.22712 -18.86130 -18.69294 -17.44843 -17.40050 -17.02255 -16.53832 -16.43937 -15.92237 -15.60873 -15.34007 -15.03706 -14.92352 -14.82003 -14.65304 -14.55390 -14.17134 -13.80993 -13.67747 -13.50148 -13.43900 -13.35567 -12.99398 -12.85436 -12.77758 -12.72643 -12.39292 -12.33986 -12.18404 -12.15206 -11.92889 -11.77603 -11.49543 -11.43382 -11.30203 -11.21908 -10.93231 -10.73759 -10.38078 -10.01776 -9.86432 -8.86068 -7.76913 -5.21080 0.18011 1.35660 1.45119 1.45879 1.53344 1.56326 2.09333 2.16007 2.49055 3.31601 3.46618 3.49840 3.71886 3.75697 3.93724 3.95288 4.09055 4.25065 4.25496 4.28986 4.31495 4.35942 4.48982 4.53984 4.54627 4.58831 4.65850 4.73076 4.78710 4.81557 4.85854 4.87564 5.03678 5.04587 5.14347 5.14430 5.20689 5.26082 5.29016 5.35349 5.39900 5.43106 5.47815 5.53876 5.57429 5.75759 5.79163 5.87558 6.33828 6.37653 6.99380 7.07898 7.12669 7.80886 8.44500 9.24435 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.001995 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.234792 B =14035.186339 C =14394.500404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C 0.017 3.983 4 C -0.175 4.175 5 C -0.056 4.056 6 C 0.588 3.412 7 O -0.575 6.575 8 N -0.696 5.696 9 C 0.127 3.873 10 C -0.101 4.101 11 C -0.078 4.078 12 H 0.077 0.923 13 C 0.133 3.867 14 N -0.630 5.630 15 C -0.238 4.238 16 H 0.076 0.924 17 C -0.069 4.069 18 N -0.948 5.948 19 Si 0.978 3.022 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.159 3.841 24 C -0.100 4.100 25 H 0.073 0.927 26 C -0.127 4.127 27 N -0.269 5.269 28 C 0.086 3.914 29 N -0.295 5.295 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.193 0.807 36 H 0.419 0.581 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.011 0.989 42 H 0.027 0.973 43 H 0.246 0.754 44 H 0.068 0.932 45 H -0.019 1.019 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.111 0.889 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.028 -11.599 -9.931 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.204 4.204 5 C -0.185 4.185 6 C 0.374 3.626 7 O -0.456 6.456 8 N -0.348 5.348 9 C 0.003 3.997 10 C -0.139 4.139 11 C -0.097 4.097 12 H 0.096 0.904 13 C 0.008 3.992 14 N -0.356 5.356 15 C -0.367 4.367 16 H 0.094 0.906 17 C -0.262 4.262 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.216 1.216 23 C 0.034 3.966 24 C -0.120 4.120 25 H 0.091 0.909 26 C -0.185 4.185 27 N -0.056 5.056 28 C -0.053 4.053 29 N -0.129 5.129 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.210 0.790 36 H 0.257 0.743 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.029 0.971 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.086 0.914 45 H -0.001 1.001 46 H 0.066 0.934 47 H 0.100 0.900 48 H 0.068 0.932 49 H 0.106 0.894 50 H 0.130 0.870 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.366 -10.429 -11.264 28.798 hybrid contribution 1.914 0.342 0.582 2.030 sum -22.452 -10.087 -10.682 26.832 Atomic orbital electron populations 1.21682 0.94436 1.02547 1.01430 1.20034 0.96262 0.86750 1.04490 1.22573 0.99918 0.97691 0.93764 1.22568 1.02695 0.91617 1.03542 1.21468 1.04230 0.97270 0.95496 1.17091 0.79059 0.85408 0.81087 1.90790 1.64868 1.24550 1.65369 1.45543 1.44592 1.21660 1.22962 1.21381 0.91731 0.91743 0.94819 1.21644 0.98915 0.98199 0.95112 1.22045 0.93714 0.99335 0.94644 0.90438 1.21594 0.87922 0.97205 0.92515 1.44866 1.01772 1.85932 1.02992 1.19479 0.82703 1.41758 0.92750 0.90564 1.25626 1.02253 1.02885 0.95398 1.70077 1.32214 1.58381 0.99096 0.85003 0.79806 0.76814 0.77680 1.19344 1.21997 1.21551 1.21794 0.92496 0.95369 0.86977 1.22467 0.95210 0.99581 0.94717 0.90856 1.21599 0.98867 1.00984 0.97018 1.45790 1.30339 1.09855 1.19660 1.22389 1.05334 0.80729 0.96895 1.73098 1.20585 0.93082 1.26119 0.93167 0.93721 0.90472 0.90036 0.87616 0.79026 0.74300 0.91350 0.92787 0.90465 0.88141 0.97122 0.95477 0.94384 0.91389 1.00081 0.93414 0.89959 0.93179 0.89393 0.87009 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.88 71.98 0.71 -0.82 16 2 C -0.04 -0.40 6.51 29.85 0.19 -0.21 16 3 C 0.02 0.29 6.49 43.05 0.28 0.57 16 4 C -0.18 -2.82 10.42 22.66 0.24 -2.58 16 5 C -0.06 -1.19 6.96 40.79 0.28 -0.91 16 6 C 0.59 13.80 7.79 86.59 0.67 14.48 16 7 O -0.58 -17.33 14.86 -4.10 -0.06 -17.39 16 8 N -0.70 -12.74 5.54 -466.63 -2.58 -15.33 16 9 C 0.13 2.77 5.57 86.38 0.48 3.25 16 10 C -0.10 -2.08 4.74 30.59 0.14 -1.93 16 11 C -0.08 -2.37 2.38 -9.60 -0.02 -2.40 16 12 H 0.08 2.32 8.02 -2.39 -0.02 2.30 16 13 C 0.13 5.42 6.25 86.73 0.54 5.96 16 14 N -0.63 -32.94 3.39 -691.96 -2.35 -35.29 16 15 C -0.24 -13.64 10.27 84.03 0.86 -12.78 16 16 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 17 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 18 N -0.95 -57.13 10.09 21.65 0.22 -56.91 16 19 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 C 0.16 7.78 5.36 86.86 0.47 8.24 16 24 C -0.10 -3.43 3.09 -9.40 -0.03 -3.46 16 25 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 26 C -0.13 -3.45 9.30 71.98 0.67 -2.78 16 27 N -0.27 -5.86 3.75 -356.03 -1.33 -7.19 16 28 C 0.09 1.47 10.65 127.77 1.36 2.84 16 29 N -0.29 -6.39 11.87 -47.49 -0.56 -6.95 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.67 8.12 -2.39 -0.02 0.65 16 35 H 0.19 1.62 7.61 -2.91 -0.02 1.59 16 36 H 0.42 4.88 7.54 -92.71 -0.70 4.18 16 37 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 39 H 0.08 1.58 7.95 -2.39 -0.02 1.56 16 40 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.03 1.08 7.70 -2.39 -0.02 1.06 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.07 3.84 5.88 -2.39 -0.01 3.82 16 45 H -0.02 -1.01 8.04 -2.39 -0.02 -1.03 16 46 H 0.05 1.33 8.11 -2.39 -0.02 1.31 16 47 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.10 1.84 6.66 -2.39 -0.02 1.83 16 Total: -1.00 -76.26 408.57 2.88 -73.37 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.21 Total: 13.28 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 7.32 Total: 3.94 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -6.61 Total: -121.67 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.06 Total: -17.39 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.26 2.88 -73.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103569439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.779 kcal (2) G-P(sol) polarization free energy of solvation -76.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds