Wall clock time and date at job start Tue Mar 31 2020 17:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47388 * 2 1 4 4 C 1.35365 * 126.38912 * 85.03399 * 3 2 1 5 5 C 1.41500 * 105.50387 * 179.97438 * 4 3 2 6 6 C 1.47706 * 126.52096 * 180.02562 * 5 4 3 7 7 O 1.21579 * 119.99630 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00293 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99718 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46534 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.46649 * 180.02562 * 10 9 8 12 12 H 1.09004 * 110.88941 * 54.29849 * 11 10 9 13 13 C 1.54912 * 111.00634 * 290.41720 * 11 10 9 14 14 N 1.47473 * 104.81363 * 204.95364 * 13 11 10 15 15 C 1.36937 * 125.62556 * 204.05112 * 14 13 11 16 16 H 1.07994 * 120.00494 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99552 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99937 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99730 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47311 * 90.00381 * 19 17 15 21 21 H 1.48509 * 109.46935 * 209.99913 * 19 17 15 22 22 H 1.48499 * 109.47280 * 329.99649 * 19 17 15 23 23 C 1.47021 * 108.71897 * 24.06825 * 14 13 11 24 24 C 1.54320 * 107.27234 * 358.97656 * 23 14 13 25 25 H 1.09000 * 110.71856 * 96.17286 * 24 23 14 26 26 C 1.53005 * 110.86932 * 219.36812 * 24 23 14 27 27 N 1.31807 * 106.96349 * 0.02562 * 5 4 3 28 28 N 1.28474 * 110.07444 * 359.97438 * 27 5 4 29 29 C 1.46496 * 124.88476 * 180.02562 * 28 27 5 30 30 H 1.09000 * 109.46936 * 60.00215 * 1 2 3 31 31 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46880 * 300.00047 * 1 2 3 33 33 H 1.08997 * 109.47633 * 239.99737 * 2 1 3 34 34 H 1.09004 * 109.47540 * 119.99403 * 2 1 3 35 35 H 1.08000 * 127.24685 * 359.97438 * 4 3 2 36 36 H 0.96995 * 119.99680 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47216 * 300.00035 * 9 8 6 38 38 H 1.08998 * 109.46760 * 60.00508 * 9 8 6 39 39 H 1.09000 * 109.47384 * 299.99915 * 10 9 8 40 40 H 1.09000 * 109.46838 * 60.00365 * 10 9 8 41 41 H 1.09002 * 110.36749 * 323.75896 * 13 11 10 42 42 H 1.08997 * 110.36483 * 86.07891 * 13 11 10 43 43 H 0.97001 * 119.99650 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.88026 * 239.55767 * 23 14 13 45 45 H 1.09005 * 109.87951 * 118.39856 * 23 14 13 46 46 H 1.09006 * 109.46898 * 173.61174 * 26 24 23 47 47 H 1.09001 * 109.47657 * 293.61450 * 26 24 23 48 48 H 1.09005 * 109.46766 * 53.61775 * 26 24 23 49 49 H 1.09000 * 109.47391 * 90.02661 * 29 28 27 50 50 H 1.09001 * 109.47315 * 210.02503 * 29 28 27 51 51 H 1.09000 * 109.47596 * 330.02914 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2112 2.2094 1.0856 5 6 2.6937 3.4411 0.5831 6 6 3.0443 4.6370 1.3758 7 8 2.9265 4.6202 2.5858 8 7 3.4948 5.7468 0.7580 9 6 3.8421 6.9332 1.5443 10 6 4.3217 8.0436 0.6073 11 6 4.6849 9.2823 1.4285 12 1 5.4061 9.0345 2.2074 13 6 3.4186 9.9388 2.0328 14 7 3.7880 11.3517 2.2383 15 6 3.2086 12.2047 3.1394 16 1 2.4088 11.8561 3.7758 17 6 3.6503 13.5172 3.2356 18 7 4.6255 13.9418 2.4603 19 14 2.8605 14.6805 4.4653 20 1 3.5877 14.6030 5.7577 21 1 2.9244 16.0697 3.9440 22 1 1.4416 14.2941 4.6716 23 6 4.8805 11.6928 1.3155 24 6 5.2200 10.4173 0.5160 25 1 4.7043 10.4154 -0.4444 26 6 6.7312 10.2849 0.3169 27 7 2.7707 3.3182 -0.7270 28 7 2.3883 2.1445 -1.0830 29 6 2.3449 1.6608 -2.4652 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.0248 1.9526 2.1179 36 1 3.5884 5.7603 -0.2074 37 1 2.9644 7.2751 2.0930 38 1 4.6359 6.6830 2.2481 39 1 5.1992 7.7020 0.0583 40 1 3.5275 8.2936 -0.0962 41 1 2.5830 9.8628 1.3370 42 1 3.1653 9.4701 2.9837 43 1 4.9343 14.8589 2.5278 44 1 5.7538 12.0201 1.8798 45 1 4.5588 12.4819 0.6357 46 1 6.9536 9.3245 -0.1485 47 1 7.0851 11.0908 -0.3261 48 1 7.2316 10.3448 1.2834 49 1 3.2991 1.1990 -2.7187 50 1 1.5468 0.9257 -2.5680 51 1 2.1567 2.4980 -3.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103784731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:08 Heat of formation + Delta-G solvation = 47.685872 kcal Electronic energy + Delta-G solvation = -28211.843713 eV Core-core repulsion = 24341.009550 eV Total energy + Delta-G solvation = -3870.834163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.99462 -39.40603 -38.05509 -35.17229 -34.83688 -33.73370 -33.14095 -31.13343 -30.58616 -29.68458 -28.07605 -26.64306 -25.59933 -24.35725 -24.02742 -22.97315 -21.81851 -21.15516 -19.99731 -19.48174 -19.07983 -17.52315 -16.76782 -16.68505 -16.64404 -15.67454 -15.46997 -15.03624 -14.86459 -14.51530 -14.23414 -13.93544 -13.86459 -13.69990 -13.54912 -13.27093 -13.05026 -12.95354 -12.79539 -12.48391 -12.21848 -12.10221 -11.82166 -11.67445 -11.64080 -11.31312 -11.15752 -11.06021 -10.98027 -10.70935 -10.70555 -10.20396 -9.98573 -9.81216 -9.76728 -9.57344 -9.42499 -9.42354 -9.23434 -8.96296 -8.52103 -6.73151 -5.62962 -2.95611 1.37063 1.83322 2.10476 3.17054 3.37579 3.45743 3.50580 3.52505 3.97918 4.09951 4.41422 4.55387 4.57189 4.59675 4.74365 4.83907 4.97385 4.99076 5.05819 5.20018 5.23757 5.35335 5.38257 5.40989 5.53996 5.59055 5.64004 5.68123 5.70480 5.77281 5.83438 6.01833 6.07100 6.14217 6.17657 6.29988 6.33614 6.42077 6.43902 6.49338 6.59651 6.71077 6.74655 6.87939 7.09998 7.41352 7.65985 7.70499 7.73624 7.92404 8.21282 8.35184 9.31272 9.91726 10.58613 11.48729 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.001904 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.457697 B =14706.151647 C =15522.899444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.011 3.989 4 C -0.176 4.176 5 C -0.011 4.011 6 C 0.601 3.399 7 O -0.532 6.532 8 N -0.716 5.716 9 C 0.118 3.882 10 C -0.116 4.116 11 C -0.095 4.095 12 H 0.077 0.923 13 C 0.139 3.861 14 N -0.607 5.607 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.184 3.816 24 C -0.115 4.115 25 H 0.063 0.937 26 C -0.133 4.133 27 N -0.263 5.263 28 N -0.282 5.282 29 C 0.084 3.916 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.405 0.595 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.017 0.983 42 H 0.038 0.962 43 H 0.251 0.749 44 H 0.047 0.953 45 H 0.039 0.961 46 H 0.043 0.957 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -29.949 -12.496 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.203 4.203 5 C -0.172 4.172 6 C 0.385 3.615 7 O -0.407 6.407 8 N -0.367 5.367 9 C -0.005 4.005 10 C -0.154 4.154 11 C -0.115 4.115 12 H 0.095 0.905 13 C 0.013 3.987 14 N -0.333 5.333 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.742 3.258 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.059 3.941 24 C -0.134 4.134 25 H 0.082 0.918 26 C -0.190 4.190 27 N -0.098 5.098 28 N -0.070 5.070 29 C -0.056 4.056 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.179 0.821 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.103 0.897 50 H 0.113 0.887 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.956 -29.142 -12.637 31.901 hybrid contribution -0.533 0.305 0.713 0.941 sum -3.489 -28.837 -11.924 31.400 Atomic orbital electron populations 1.21780 0.93951 1.02252 1.02730 1.20112 0.96485 0.88708 1.03900 1.21390 1.06088 0.96990 0.86849 1.21512 1.06778 0.92352 0.99702 1.21937 1.08439 0.96949 0.89825 1.16884 0.77146 0.81183 0.86332 1.90814 1.53834 1.82877 1.13169 1.45926 1.66231 1.13156 1.11350 1.21543 1.01109 0.83563 0.94283 1.21740 1.01123 0.94455 0.98083 1.22326 0.98953 0.92714 0.97490 0.90506 1.21634 0.93656 0.86309 0.97145 1.44491 1.40157 1.05980 1.42705 1.19080 1.13594 0.90865 1.11729 0.90500 1.24798 0.98897 0.97231 0.99784 1.69975 1.29869 1.16214 1.41050 0.86126 0.78655 0.80403 0.80648 1.21669 1.21766 1.20744 1.21197 0.91454 0.90586 0.90841 1.22482 0.95106 0.97465 0.98346 0.91822 1.21676 0.95908 1.00080 1.01369 1.73516 1.18545 1.02791 1.14982 1.45296 1.45699 1.08199 1.07811 1.22163 1.04183 1.01640 0.77611 0.92783 0.91676 0.91757 0.90743 0.89033 0.82097 0.76066 0.90751 0.91234 0.91611 0.91312 0.96502 0.94390 0.93894 0.93482 0.94297 0.93825 0.93050 0.92770 0.89680 0.88735 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.89 37.16 0.37 -0.25 16 2 C -0.05 -0.24 6.00 -27.88 -0.17 -0.40 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -1.92 10.73 -39.36 -0.42 -2.35 16 5 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 6 C 0.60 8.90 7.82 -12.39 -0.10 8.80 16 7 O -0.53 -9.59 16.93 5.30 0.09 -9.50 16 8 N -0.72 -9.29 5.55 -61.29 -0.34 -9.63 16 9 C 0.12 1.64 5.55 -4.04 -0.02 1.62 16 10 C -0.12 -1.56 4.84 -26.73 -0.13 -1.69 16 11 C -0.09 -1.65 2.48 -88.47 -0.22 -1.87 16 12 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 13 C 0.14 2.95 6.04 -2.50 -0.02 2.94 16 14 N -0.61 -16.03 3.40 -170.03 -0.58 -16.61 16 15 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -27.80 10.31 55.49 0.57 -27.22 16 19 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.18 4.55 4.97 -3.07 -0.02 4.54 16 24 C -0.11 -2.14 3.01 -88.79 -0.27 -2.41 16 25 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 26 C -0.13 -2.12 9.17 37.16 0.34 -1.78 16 27 N -0.26 -2.95 11.67 33.42 0.39 -2.56 16 28 N -0.28 -2.35 3.70 -63.85 -0.24 -2.59 16 29 C 0.08 0.30 10.89 59.84 0.65 0.95 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.19 7.43 -51.93 -0.39 -0.19 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.40 4.48 8.20 -40.82 -0.33 4.15 16 37 H 0.07 1.15 7.59 -51.93 -0.39 0.76 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 41 H 0.02 0.36 7.96 -51.93 -0.41 -0.05 16 42 H 0.04 0.81 8.10 -51.93 -0.42 0.38 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.05 1.29 7.02 -51.92 -0.36 0.92 16 45 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 49 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 50 H 0.09 0.12 7.45 -51.93 -0.39 -0.27 16 51 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 411.95 15.07 6.21 6.21 Total: -1.00 -35.70 411.95 -9.22 -44.92 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.96 Total: -0.68 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.34 Total: -0.10 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.19 Total: -58.61 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.70 -9.22 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103784731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.601 kcal (2) G-P(sol) polarization free energy of solvation -35.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds