Wall clock time and date at job start Tue Mar 31 2020 17:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47388 * 2 1 4 4 C 1.35365 * 126.38912 * 85.03399 * 3 2 1 5 5 C 1.41500 * 105.50387 * 179.97438 * 4 3 2 6 6 C 1.47706 * 126.52096 * 180.02562 * 5 4 3 7 7 O 1.21579 * 119.99630 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00293 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99718 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46534 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.46649 * 180.02562 * 10 9 8 12 12 H 1.09004 * 110.88941 * 54.29849 * 11 10 9 13 13 C 1.54912 * 111.00634 * 290.41720 * 11 10 9 14 14 N 1.47473 * 104.81363 * 204.95364 * 13 11 10 15 15 C 1.36937 * 125.62556 * 204.05112 * 14 13 11 16 16 H 1.07994 * 120.00494 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99552 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99937 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99730 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47311 * 90.00381 * 19 17 15 21 21 H 1.48509 * 109.46935 * 209.99913 * 19 17 15 22 22 H 1.48499 * 109.47280 * 329.99649 * 19 17 15 23 23 C 1.47021 * 108.71897 * 24.06825 * 14 13 11 24 24 C 1.54320 * 107.27234 * 358.97656 * 23 14 13 25 25 H 1.09000 * 110.71856 * 96.17286 * 24 23 14 26 26 C 1.53005 * 110.86932 * 219.36812 * 24 23 14 27 27 N 1.31807 * 106.96349 * 0.02562 * 5 4 3 28 28 N 1.28474 * 110.07444 * 359.97438 * 27 5 4 29 29 C 1.46496 * 124.88476 * 180.02562 * 28 27 5 30 30 H 1.09000 * 109.46936 * 60.00215 * 1 2 3 31 31 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46880 * 300.00047 * 1 2 3 33 33 H 1.08997 * 109.47633 * 239.99737 * 2 1 3 34 34 H 1.09004 * 109.47540 * 119.99403 * 2 1 3 35 35 H 1.08000 * 127.24685 * 359.97438 * 4 3 2 36 36 H 0.96995 * 119.99680 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47216 * 300.00035 * 9 8 6 38 38 H 1.08998 * 109.46760 * 60.00508 * 9 8 6 39 39 H 1.09000 * 109.47384 * 299.99915 * 10 9 8 40 40 H 1.09000 * 109.46838 * 60.00365 * 10 9 8 41 41 H 1.09002 * 110.36749 * 323.75896 * 13 11 10 42 42 H 1.08997 * 110.36483 * 86.07891 * 13 11 10 43 43 H 0.97001 * 119.99650 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.88026 * 239.55767 * 23 14 13 45 45 H 1.09005 * 109.87951 * 118.39856 * 23 14 13 46 46 H 1.09006 * 109.46898 * 173.61174 * 26 24 23 47 47 H 1.09001 * 109.47657 * 293.61450 * 26 24 23 48 48 H 1.09005 * 109.46766 * 53.61775 * 26 24 23 49 49 H 1.09000 * 109.47391 * 90.02661 * 29 28 27 50 50 H 1.09001 * 109.47315 * 210.02503 * 29 28 27 51 51 H 1.09000 * 109.47596 * 330.02914 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2112 2.2094 1.0856 5 6 2.6937 3.4411 0.5831 6 6 3.0443 4.6370 1.3758 7 8 2.9265 4.6202 2.5858 8 7 3.4948 5.7468 0.7580 9 6 3.8421 6.9332 1.5443 10 6 4.3217 8.0436 0.6073 11 6 4.6849 9.2823 1.4285 12 1 5.4061 9.0345 2.2074 13 6 3.4186 9.9388 2.0328 14 7 3.7880 11.3517 2.2383 15 6 3.2086 12.2047 3.1394 16 1 2.4088 11.8561 3.7758 17 6 3.6503 13.5172 3.2356 18 7 4.6255 13.9418 2.4603 19 14 2.8605 14.6805 4.4653 20 1 3.5877 14.6030 5.7577 21 1 2.9244 16.0697 3.9440 22 1 1.4416 14.2941 4.6716 23 6 4.8805 11.6928 1.3155 24 6 5.2200 10.4173 0.5160 25 1 4.7043 10.4154 -0.4444 26 6 6.7312 10.2849 0.3169 27 7 2.7707 3.3182 -0.7270 28 7 2.3883 2.1445 -1.0830 29 6 2.3449 1.6608 -2.4652 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.0248 1.9526 2.1179 36 1 3.5884 5.7603 -0.2074 37 1 2.9644 7.2751 2.0930 38 1 4.6359 6.6830 2.2481 39 1 5.1992 7.7020 0.0583 40 1 3.5275 8.2936 -0.0962 41 1 2.5830 9.8628 1.3370 42 1 3.1653 9.4701 2.9837 43 1 4.9343 14.8589 2.5278 44 1 5.7538 12.0201 1.8798 45 1 4.5588 12.4819 0.6357 46 1 6.9536 9.3245 -0.1485 47 1 7.0851 11.0908 -0.3261 48 1 7.2316 10.3448 1.2834 49 1 3.2991 1.1990 -2.7187 50 1 1.5468 0.9257 -2.5680 51 1 2.1567 2.4980 -3.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103784731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:06 Heat of formation + Delta-G solvation = 23.927635 kcal Electronic energy + Delta-G solvation = -28212.873948 eV Core-core repulsion = 24341.009550 eV Total energy + Delta-G solvation = -3871.864397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.71045 -40.57657 -39.67548 -36.49575 -35.36443 -34.96369 -34.32452 -32.53283 -32.44721 -30.31042 -29.01930 -28.04141 -27.30935 -25.73317 -24.56058 -24.13542 -23.18566 -21.95086 -21.44344 -20.89056 -20.35375 -18.84777 -18.23197 -17.52580 -17.35990 -16.97019 -16.75287 -16.43468 -15.96508 -15.62076 -15.42816 -15.21565 -15.05577 -14.72684 -14.43231 -14.21011 -14.15035 -13.87763 -13.65065 -13.43036 -13.40093 -13.34191 -13.20570 -12.92712 -12.78419 -12.72382 -12.49314 -12.39402 -12.22714 -12.06443 -11.91617 -11.79864 -11.72808 -11.47447 -11.35915 -11.20771 -11.02021 -10.69952 -10.30073 -9.96158 -9.93967 -8.87811 -7.84555 -5.19761 0.49303 1.09204 1.43511 1.46024 1.54630 1.55366 2.15560 2.33849 2.49140 3.30569 3.32690 3.61057 3.65156 3.75982 3.91609 3.95415 4.04038 4.16873 4.27963 4.35391 4.36257 4.43413 4.47987 4.52308 4.55065 4.62891 4.67337 4.69468 4.74665 4.75846 4.80077 4.83402 5.01973 5.03308 5.07373 5.12130 5.18045 5.18382 5.28050 5.31251 5.38596 5.39736 5.41530 5.47362 5.54860 5.75869 5.84427 5.86548 6.21619 6.42769 6.88955 7.11756 7.14685 7.79592 8.44321 9.25461 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.001904 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.457697 B =14706.151647 C =15522.899444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.027 3.973 4 C -0.205 4.205 5 C -0.043 4.043 6 C 0.597 3.403 7 O -0.576 6.576 8 N -0.703 5.703 9 C 0.123 3.877 10 C -0.099 4.099 11 C -0.079 4.079 12 H 0.073 0.927 13 C 0.132 3.868 14 N -0.631 5.631 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.069 4.069 18 N -0.950 5.950 19 Si 0.979 3.021 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.191 3.809 24 C -0.102 4.102 25 H 0.079 0.921 26 C -0.126 4.126 27 N -0.271 5.271 28 N -0.274 5.274 29 C 0.071 3.929 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.156 0.844 36 H 0.416 0.584 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.033 0.967 43 H 0.246 0.754 44 H 0.011 0.989 45 H -0.001 1.001 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.041 0.959 49 H 0.104 0.896 50 H 0.123 0.877 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -32.971 -14.718 36.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.098 4.098 4 C -0.233 4.233 5 C -0.201 4.201 6 C 0.383 3.617 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.000 4.000 10 C -0.137 4.137 11 C -0.099 4.099 12 H 0.092 0.908 13 C 0.007 3.993 14 N -0.357 5.357 15 C -0.372 4.372 16 H 0.096 0.904 17 C -0.262 4.262 18 N -0.600 5.600 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.195 1.195 23 C 0.066 3.934 24 C -0.121 4.121 25 H 0.097 0.903 26 C -0.184 4.184 27 N -0.108 5.108 28 N -0.063 5.063 29 C -0.068 4.068 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.174 0.826 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.122 0.878 50 H 0.142 0.858 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.199 -32.194 -14.905 35.621 hybrid contribution -0.517 1.157 1.332 1.839 sum -3.716 -31.037 -13.573 34.078 Atomic orbital electron populations 1.21768 0.93595 1.03252 1.01933 1.20287 0.96587 0.86347 1.05706 1.21864 1.04033 0.98079 0.85871 1.21674 1.08306 0.92655 1.00633 1.21717 1.10814 0.96874 0.90672 1.17227 0.76441 0.81996 0.86040 1.90776 1.55824 1.83763 1.15042 1.45773 1.65508 1.12367 1.11800 1.21376 1.00117 0.84108 0.94409 1.21586 1.02712 0.92042 0.97324 1.22191 0.96553 0.93706 0.97425 0.90831 1.21843 0.95826 0.84183 0.97422 1.44847 1.40477 1.07865 1.42556 1.19461 1.13756 0.91766 1.12238 0.90414 1.25671 0.99752 0.98878 1.01889 1.70205 1.31120 1.16117 1.42510 0.85073 0.78210 0.77859 0.78170 1.21260 1.21832 1.19528 1.20998 0.89557 0.92842 0.90018 1.22369 0.97473 0.94301 0.97984 0.90267 1.21633 0.93281 1.02300 1.01179 1.73441 1.19011 1.04352 1.13986 1.45805 1.43695 1.07255 1.09540 1.22649 1.06453 1.02638 0.75028 0.92691 0.89768 0.93502 0.87856 0.88323 0.82594 0.74694 0.92745 0.91750 0.88555 0.90341 0.95928 0.94851 0.94455 0.97068 0.98241 0.89982 0.92864 0.94002 0.87752 0.85843 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 71.98 0.71 -0.13 16 2 C -0.05 -0.30 6.00 29.85 0.18 -0.12 16 3 C 0.03 0.39 6.17 41.40 0.26 0.64 16 4 C -0.20 -4.49 10.73 22.41 0.24 -4.25 16 5 C -0.04 -1.09 7.13 42.46 0.30 -0.79 16 6 C 0.60 18.01 7.82 86.75 0.68 18.69 16 7 O -0.58 -21.66 16.93 -3.97 -0.07 -21.72 16 8 N -0.70 -17.73 5.55 -466.08 -2.59 -20.31 16 9 C 0.12 3.35 5.55 86.38 0.48 3.83 16 10 C -0.10 -2.41 4.84 30.59 0.15 -2.27 16 11 C -0.08 -2.65 2.48 -9.40 -0.02 -2.68 16 12 H 0.07 2.55 8.05 -2.38 -0.02 2.53 16 13 C 0.13 5.68 6.04 86.85 0.52 6.21 16 14 N -0.63 -34.34 3.40 -691.86 -2.35 -36.69 16 15 C -0.24 -14.44 10.28 84.03 0.86 -13.57 16 16 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 17 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 18 N -0.95 -59.43 10.31 21.65 0.22 -59.21 16 19 Si 0.98 47.92 29.55 68.60 2.03 49.94 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 23 C 0.19 9.78 4.97 86.73 0.43 10.21 16 24 C -0.10 -3.70 3.01 -9.61 -0.03 -3.73 16 25 H 0.08 2.66 8.04 -2.39 -0.02 2.64 16 26 C -0.13 -3.80 9.17 71.98 0.66 -3.14 16 27 N -0.27 -5.70 11.67 -48.18 -0.56 -6.27 16 28 N -0.27 -3.93 3.70 -355.93 -1.32 -5.24 16 29 C 0.07 0.25 10.89 127.77 1.39 1.64 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.10 0.06 7.43 -2.39 -0.02 0.04 16 34 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.42 8.48 8.20 -92.71 -0.76 7.72 16 37 H 0.05 1.71 7.59 -2.39 -0.02 1.69 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 1.84 8.04 -2.39 -0.02 1.82 16 41 H 0.02 0.96 7.96 -2.39 -0.02 0.94 16 42 H 0.03 1.45 8.10 -2.39 -0.02 1.43 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16 44 H 0.01 0.64 7.02 -2.38 -0.02 0.62 16 45 H 0.00 -0.04 7.51 -2.38 -0.02 -0.06 16 46 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.04 1.35 8.07 -2.38 -0.02 1.33 16 49 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.12 -0.26 7.45 -2.39 -0.02 -0.28 16 51 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -82.74 411.95 2.79 -79.94 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.15 Total: 12.68 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 7.28 Total: 6.88 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -6.59 Total: -127.72 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Total: -82.74 2.79 -79.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103784731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.871 kcal (2) G-P(sol) polarization free energy of solvation -82.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds