Wall clock time and date at job start Tue Mar 31 2020 18:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47006 * 2 1 4 4 C 1.34663 * 126.59506 * 84.97335 * 3 2 1 5 5 N 1.34122 * 108.02414 * 180.02562 * 4 3 2 6 6 C 1.30504 * 109.25503 * 359.97438 * 5 4 3 7 7 C 1.50702 * 125.64909 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47230 * 305.02761 * 7 6 5 9 9 O 1.21286 * 120.00322 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00013 * 180.02562 * 8 7 6 11 11 C 1.48140 * 127.83553 * 359.97438 * 10 8 7 12 12 C 1.54390 * 104.61426 * 140.39618 * 11 10 8 13 13 H 1.09001 * 110.43358 * 142.78750 * 12 11 10 14 14 C 1.53006 * 110.34306 * 264.99121 * 12 11 10 15 15 C 1.54281 * 104.96437 * 23.86587 * 12 11 10 16 16 H 1.09002 * 110.34302 * 241.12987 * 15 12 11 17 17 C 1.52998 * 110.34397 * 118.97521 * 15 12 11 18 18 C 1.52994 * 109.47213 * 176.47750 * 17 15 12 19 19 N 1.46506 * 109.47345 * 180.02562 * 18 17 15 20 20 C 1.36934 * 119.99858 * 179.97438 * 19 18 17 21 21 H 1.07995 * 120.00381 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99885 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00203 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99705 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47537 * 89.99660 * 24 22 20 26 26 H 1.48507 * 109.46802 * 209.99499 * 24 22 20 27 27 H 1.48500 * 109.47187 * 329.98812 * 24 22 20 28 28 C 1.48145 * 127.83672 * 179.97438 * 10 8 7 29 29 N 1.35049 * 108.69957 * 0.26804 * 6 5 4 30 30 H 0.96990 * 126.39686 * 179.73742 * 29 6 5 31 31 H 1.08996 * 109.47386 * 59.99933 * 1 2 3 32 32 H 1.09002 * 109.47008 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47127 * 299.99832 * 1 2 3 34 34 H 1.09001 * 109.47127 * 240.00168 * 2 1 3 35 35 H 1.09003 * 109.47509 * 119.99373 * 2 1 3 36 36 H 1.08000 * 125.98746 * 0.04281 * 4 3 2 37 37 H 1.09002 * 109.46902 * 185.02757 * 7 6 5 38 38 H 1.08996 * 109.46834 * 65.03083 * 7 6 5 39 39 H 1.08998 * 110.41105 * 21.61541 * 11 10 8 40 40 H 1.08999 * 110.51120 * 259.22609 * 11 10 8 41 41 H 1.08996 * 109.47126 * 175.53748 * 14 12 11 42 42 H 1.08995 * 109.47333 * 295.54406 * 14 12 11 43 43 H 1.09000 * 109.46800 * 55.54206 * 14 12 11 44 44 H 1.09003 * 109.47249 * 296.47571 * 17 15 12 45 45 H 1.09002 * 109.47127 * 56.47409 * 17 15 12 46 46 H 1.09002 * 109.47391 * 300.00046 * 18 17 15 47 47 H 1.09002 * 109.47352 * 59.99797 * 18 17 15 48 48 H 0.96995 * 119.99928 * 359.97438 * 19 18 17 49 49 H 0.97002 * 119.99838 * 179.97438 * 23 22 20 50 50 H 1.08990 * 110.41068 * 100.82226 * 28 10 8 51 51 H 1.09000 * 110.40585 * 338.38365 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2106 2.2094 1.0770 5 7 2.6691 3.3958 0.6515 6 6 2.7823 3.3723 -0.6485 7 6 3.2643 4.5118 -1.5089 8 6 2.4320 5.7372 -1.2321 9 8 1.5359 5.6901 -0.4162 10 7 2.6834 6.8855 -1.8914 11 6 3.7253 7.1369 -2.9140 12 6 3.0332 8.0335 -3.9631 13 1 3.7313 8.7766 -4.3486 14 6 2.4787 7.1824 -5.1074 15 6 1.8825 8.7230 -3.2011 16 1 0.9222 8.4553 -3.6418 17 6 2.0690 10.2415 -3.2165 18 6 0.8740 10.9090 -2.5329 19 7 1.0523 12.3631 -2.5482 20 6 0.1019 13.1752 -1.9894 21 1 -0.7789 12.7439 -1.5371 22 6 0.2710 14.5530 -2.0034 23 7 -0.6427 15.3337 -1.4668 24 14 1.7947 15.2990 -2.7852 25 1 1.5337 15.5657 -4.2225 26 1 2.1305 16.5722 -2.0985 27 1 2.9315 14.3522 -2.6558 28 6 1.9804 8.1827 -1.7577 29 7 2.3897 2.1599 -1.0954 30 1 2.3674 1.8668 -2.0197 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 2.0183 1.9345 2.1036 37 1 3.1703 4.2384 -2.5599 38 1 4.3089 4.7228 -1.2804 39 1 4.0465 6.1994 -3.3678 40 1 4.5762 7.6558 -2.4726 41 1 1.9256 7.8186 -5.7983 42 1 3.3026 6.7025 -5.6355 43 1 1.8128 6.4199 -4.7033 44 1 2.9838 10.5006 -2.6835 45 1 2.1384 10.5886 -4.2474 46 1 -0.0408 10.6499 -3.0658 47 1 0.8046 10.5619 -1.5020 48 1 1.8434 12.7505 -2.9541 49 1 -0.5243 16.2964 -1.4763 50 1 2.5577 8.8655 -1.1346 51 1 0.9849 8.0342 -1.3392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104309391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:14 Heat of formation + Delta-G solvation = -4.204221 kcal Electronic energy + Delta-G solvation = -28326.302682 eV Core-core repulsion = 24453.218396 eV Total energy + Delta-G solvation = -3873.084286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 6.44 seconds Orbital eigenvalues (eV) -43.11590 -41.12440 -39.12734 -37.01355 -35.11172 -34.58222 -33.59398 -33.37691 -32.38975 -31.92782 -29.00960 -27.82761 -27.24533 -25.74666 -24.27502 -23.89886 -22.39669 -22.01050 -21.66038 -20.85749 -20.06982 -19.64969 -18.45413 -17.98891 -17.03834 -16.70036 -16.58050 -16.16430 -15.90704 -15.72079 -15.35829 -15.27884 -14.96258 -14.79035 -14.50685 -14.45953 -14.27696 -14.22117 -13.97588 -13.71594 -13.51797 -13.26110 -12.97703 -12.94369 -12.92386 -12.75386 -12.48541 -12.38883 -12.22664 -12.05053 -12.03586 -11.85285 -11.57951 -11.49536 -11.28444 -10.98183 -10.97314 -10.94299 -10.80766 -9.71230 -9.31892 -9.20254 -8.04180 -5.38899 0.97987 1.37229 1.43005 1.50509 1.62637 1.77759 2.16679 2.33246 2.48428 3.26620 3.28285 3.42872 3.62869 3.66281 3.85502 3.91255 3.99480 4.04480 4.13671 4.25965 4.33450 4.35969 4.42549 4.43757 4.50126 4.52397 4.60594 4.65858 4.68321 4.73584 4.74993 4.80718 4.92370 4.94142 4.97143 5.03466 5.07133 5.13153 5.23218 5.31116 5.32631 5.37884 5.38619 5.39448 5.59210 5.73437 5.79150 6.19671 6.48276 6.61272 7.06687 7.17348 7.17992 7.81829 8.03581 9.17600 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.001962 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.797492 B =14265.290905 C =14963.797582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.007 4.007 4 C -0.062 4.062 5 N -0.512 5.512 6 C 0.202 3.798 7 C -0.038 4.038 8 C 0.529 3.471 9 O -0.578 6.578 10 N -0.622 5.622 11 C 0.100 3.900 12 C -0.097 4.097 13 H 0.107 0.893 14 C -0.139 4.139 15 C -0.084 4.084 16 H 0.075 0.925 17 C -0.105 4.105 18 C 0.149 3.851 19 N -0.758 5.758 20 C -0.243 4.243 21 H 0.048 0.952 22 C -0.069 4.069 23 N -0.986 5.986 24 Si 0.965 3.035 25 H -0.274 1.274 26 H -0.296 1.296 27 H -0.246 1.246 28 C 0.108 3.892 29 N -0.550 5.550 30 H 0.433 0.567 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.017 0.983 47 H 0.014 0.986 48 H 0.369 0.631 49 H 0.259 0.741 50 H 0.068 0.932 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.549 -35.646 -9.491 40.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.123 4.123 4 C -0.210 4.210 5 N -0.232 5.232 6 C -0.062 4.062 7 C -0.079 4.079 8 C 0.318 3.682 9 O -0.457 6.457 10 N -0.356 5.356 11 C -0.021 4.021 12 C -0.116 4.116 13 H 0.125 0.875 14 C -0.197 4.197 15 C -0.104 4.104 16 H 0.093 0.907 17 C -0.143 4.143 18 C 0.023 3.977 19 N -0.404 5.404 20 C -0.374 4.374 21 H 0.066 0.934 22 C -0.260 4.260 23 N -0.636 5.636 24 Si 0.791 3.209 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.170 1.170 28 C -0.015 4.015 29 N -0.155 5.155 30 H 0.274 0.726 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.187 0.813 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.035 0.965 47 H 0.032 0.968 48 H 0.202 0.798 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.049 -35.090 -8.344 39.082 hybrid contribution -0.450 0.629 -0.403 0.873 sum 14.599 -34.461 -8.748 38.434 Atomic orbital electron populations 1.21771 0.94510 1.02800 1.01474 1.20108 0.95755 0.86988 1.05105 1.21684 1.06549 0.97515 0.86596 1.22398 1.08155 0.90414 1.00023 1.70153 1.19154 1.23490 1.10356 1.22589 1.04823 0.88015 0.90780 1.19998 1.01123 0.86158 1.00624 1.20499 0.84093 0.83900 0.79746 1.90782 1.34557 1.84629 1.35731 1.49037 1.35595 1.09377 1.41551 1.22833 0.89951 1.01750 0.87587 1.22200 0.96294 0.97862 0.95255 0.87532 1.21829 1.01525 0.99295 0.97017 1.22033 1.00369 0.93892 0.94072 0.90691 1.21728 0.97407 0.93568 1.01559 1.20858 0.97315 0.82129 0.97400 1.42684 1.23677 1.02785 1.71228 1.19045 0.99928 0.88989 1.29430 0.93428 1.25664 1.02048 0.96321 1.01996 1.69916 1.37625 1.03837 1.52249 0.85265 0.79816 0.77701 0.78116 1.19980 1.22233 1.17017 1.22356 0.97057 0.84314 0.97817 1.42999 1.50454 1.11642 1.10411 0.72552 0.93682 0.90030 0.93532 0.88947 0.88180 0.81284 0.83172 0.84027 0.86615 0.89392 0.92780 0.89942 0.93572 0.90715 0.90030 0.96497 0.96832 0.79752 0.93262 0.91342 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 71.98 0.71 -0.71 16 2 C -0.04 -0.34 6.49 29.85 0.19 -0.15 16 3 C -0.01 -0.11 6.49 40.95 0.27 0.16 16 4 C -0.06 -1.47 11.79 83.52 0.98 -0.49 16 5 N -0.51 -14.89 10.58 -188.13 -1.99 -16.88 16 6 C 0.20 4.22 6.96 138.13 0.96 5.18 16 7 C -0.04 -0.53 5.31 29.10 0.15 -0.38 16 8 C 0.53 13.03 7.90 87.65 0.69 13.72 16 9 O -0.58 -21.64 15.82 -3.05 -0.05 -21.69 16 10 N -0.62 -12.76 3.32 -807.92 -2.68 -15.44 16 11 C 0.10 1.06 6.46 86.54 0.56 1.62 16 12 C -0.10 -1.21 3.31 -9.89 -0.03 -1.24 16 13 H 0.11 1.07 7.71 -2.39 -0.02 1.05 16 14 C -0.14 -1.41 8.90 71.98 0.64 -0.77 16 15 C -0.08 -1.77 2.73 -9.88 -0.03 -1.80 16 16 H 0.07 1.74 7.71 -2.39 -0.02 1.72 16 17 C -0.10 -2.72 4.51 30.59 0.14 -2.58 16 18 C 0.15 5.78 6.12 86.38 0.53 6.31 16 19 N -0.76 -36.33 5.41 -343.45 -1.86 -38.19 16 20 C -0.24 -14.52 10.47 84.03 0.88 -13.64 16 21 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 23 N -0.99 -65.07 13.97 21.65 0.30 -64.77 16 24 Si 0.97 45.72 27.74 68.60 1.90 47.62 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 28 C 0.11 2.79 5.80 86.55 0.50 3.29 16 29 N -0.55 -7.77 6.15 -174.59 -1.07 -8.84 16 30 H 0.43 2.49 8.96 -92.72 -0.83 1.66 16 31 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.15 0.62 7.95 -2.39 -0.02 0.60 16 38 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.12 0.38 7.02 -2.39 -0.02 0.36 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 1.84 8.02 -2.39 -0.02 1.82 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.01 0.57 7.54 -2.39 -0.02 0.55 16 48 H 0.37 16.28 5.53 -92.71 -0.51 15.76 16 49 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 50 H 0.07 1.86 7.78 -2.39 -0.02 1.85 16 51 H 0.05 1.59 7.88 -2.39 -0.02 1.58 16 Total: -1.00 -92.34 410.59 1.70 -90.64 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.48 Total: 22.76 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 7.62 Total: 4.80 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -7.30 Total: -144.13 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -92.34 1.70 -90.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104309391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.435 kcal (2) G-P(sol) polarization free energy of solvation -92.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.44 seconds