Wall clock time and date at job start Tue Mar 31 2020 19:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.50700 * 109.47173 * 179.97438 * 3 2 1 5 5 C 1.35358 * 126.38413 * 275.01727 * 4 3 2 6 6 C 1.41502 * 105.50345 * 180.02562 * 5 4 3 7 7 C 1.47715 * 126.51978 * 180.02562 * 6 5 4 8 8 O 1.21560 * 119.99984 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99657 * 179.97438 * 7 6 5 10 10 C 1.47483 * 127.03896 * 0.02562 * 9 7 6 11 11 C 1.53999 * 107.08696 * 154.51512 * 10 9 7 12 12 H 1.08998 * 110.32744 * 120.19506 * 11 10 9 13 13 C 1.53001 * 110.32835 * 242.31185 * 11 10 9 14 14 C 1.54616 * 105.04389 * 1.30450 * 11 10 9 15 15 H 1.09006 * 110.74303 * 263.51194 * 14 11 10 16 16 C 1.53003 * 110.74128 * 140.18770 * 14 11 10 17 17 C 1.52996 * 109.47087 * 174.99763 * 16 14 11 18 18 N 1.46506 * 109.46779 * 179.97438 * 17 16 14 19 19 C 1.36941 * 119.99869 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00090 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99960 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 120.00211 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46919 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46933 * 119.99608 * 23 21 19 26 26 H 1.48503 * 109.46913 * 239.99851 * 23 21 19 27 27 C 1.48116 * 127.03027 * 179.70332 * 9 7 6 28 28 N 1.31809 * 106.96320 * 0.02562 * 6 5 4 29 29 N 1.28465 * 110.07232 * 359.97438 * 28 6 5 30 30 H 0.97006 * 124.88570 * 180.25711 * 29 28 6 31 31 H 1.09001 * 109.46767 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47005 * 300.00267 * 1 2 3 33 33 H 1.08997 * 109.47153 * 60.00552 * 1 2 3 34 34 H 1.09001 * 109.47487 * 239.99544 * 2 1 3 35 35 H 1.09005 * 109.47452 * 119.99300 * 2 1 3 36 36 H 1.08992 * 109.47580 * 59.99462 * 3 2 1 37 37 H 1.09002 * 109.46683 * 299.99284 * 3 2 1 38 38 H 1.08002 * 127.25247 * 359.97438 * 5 4 3 39 39 H 1.09004 * 109.90785 * 273.87677 * 10 9 7 40 40 H 1.08998 * 109.91289 * 35.15115 * 10 9 7 41 41 H 1.08998 * 109.47337 * 58.54395 * 13 11 10 42 42 H 1.08998 * 109.47509 * 178.54791 * 13 11 10 43 43 H 1.09000 * 109.46807 * 298.54454 * 13 11 10 44 44 H 1.09005 * 109.46749 * 295.00079 * 16 14 11 45 45 H 1.09000 * 109.46857 * 54.99830 * 16 14 11 46 46 H 1.08995 * 109.47611 * 299.99903 * 17 16 14 47 47 H 1.09000 * 109.47217 * 60.00287 * 17 16 14 48 48 H 0.96998 * 120.00350 * 0.02562 * 18 17 16 49 49 H 0.97003 * 119.99891 * 180.02562 * 22 21 19 50 50 H 1.09001 * 110.66436 * 337.77429 * 27 9 7 51 51 H 1.08997 * 110.66287 * 100.88788 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3495 1.3473 1.0865 6 6 5.6718 1.3920 0.5847 7 6 6.9159 1.3222 1.3780 8 8 6.8602 1.2158 2.5877 9 7 8.1127 1.3765 0.7606 10 6 8.3601 1.5044 -0.6877 11 6 9.7461 2.1547 -0.8543 12 1 10.4095 1.4944 -1.4129 13 6 9.6185 3.5036 -1.5649 14 6 10.2727 2.3516 0.5861 15 1 10.0740 3.3652 0.9345 16 6 11.7672 2.0333 0.6649 17 6 12.2840 2.3562 2.0683 18 7 13.7149 2.0508 2.1439 19 6 14.3989 2.2604 3.3115 20 1 13.8837 2.6513 4.1765 21 6 15.7547 1.9716 3.3831 22 7 16.3827 1.4957 2.3287 23 14 16.6881 2.2582 4.9757 24 1 15.7603 2.7952 6.0033 25 1 17.2634 0.9741 5.4502 26 1 17.7825 3.2338 4.7393 27 6 9.4486 1.3265 1.3984 28 7 5.5823 1.5077 -0.7252 29 7 4.3485 1.5383 -1.0819 30 1 4.0374 1.6154 -1.9974 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 1.6766 1.9564 0.8898 37 1 1.6767 1.9562 -0.8901 38 1 4.0448 1.2573 2.1187 39 1 8.3539 0.5191 -1.1538 40 1 7.5965 2.1369 -1.1404 41 1 8.9627 4.1569 -0.9894 42 1 10.6031 3.9629 -1.6524 43 1 9.1987 3.3520 -2.5593 44 1 11.9249 0.9756 0.4540 45 1 12.3058 2.6342 -0.0678 46 1 12.1262 3.4139 2.2792 47 1 11.7454 1.7553 2.8010 48 1 14.1777 1.7001 1.3669 49 1 17.3301 1.2935 2.3789 50 1 9.3868 1.6263 2.4445 51 1 9.8810 0.3302 1.3077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104473297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:08 Heat of formation + Delta-G solvation = 8.257670 kcal Electronic energy + Delta-G solvation = -28251.333282 eV Core-core repulsion = 24378.789384 eV Total energy + Delta-G solvation = -3872.543898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.74225 -41.07714 -39.09369 -36.87427 -36.24010 -34.65250 -33.47559 -32.90653 -31.99093 -31.67160 -28.79382 -27.41114 -27.36331 -26.24548 -24.72263 -23.59825 -22.86672 -22.02894 -21.90834 -21.04033 -20.08999 -19.15817 -18.74286 -17.81064 -17.20545 -16.85452 -16.63994 -16.25990 -15.94216 -15.89336 -15.34943 -15.27055 -15.01337 -14.85814 -14.67741 -14.43121 -14.33210 -14.05574 -13.91298 -13.54537 -13.25056 -13.12060 -12.99754 -12.89585 -12.68076 -12.46441 -12.43275 -12.28247 -12.12619 -12.09710 -11.97496 -11.81577 -11.57628 -11.54370 -11.53621 -11.24400 -11.23282 -10.93400 -10.48577 -9.96665 -9.74569 -9.00128 -7.96144 -5.24869 0.45141 1.06971 1.46671 1.47540 1.57987 1.69598 2.10106 2.27129 2.55475 3.20024 3.37406 3.53788 3.57007 3.64427 3.75491 3.93296 4.10558 4.16480 4.19351 4.25200 4.32230 4.44680 4.47741 4.49756 4.52715 4.61429 4.67948 4.69075 4.74306 4.80368 4.85553 4.90538 4.92372 4.94727 4.98901 5.02978 5.09330 5.18296 5.23596 5.27957 5.32503 5.34947 5.38186 5.41161 5.47982 5.49441 5.55415 6.09311 6.27106 6.42771 6.76621 7.03972 7.33143 8.09089 8.33331 9.27520 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.001855 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.625401 B =15090.957210 C =15900.763837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.047 4.047 4 C 0.041 3.959 5 C -0.200 4.200 6 C -0.032 4.032 7 C 0.609 3.391 8 O -0.579 6.579 9 N -0.609 5.609 10 C 0.110 3.890 11 C -0.096 4.096 12 H 0.099 0.901 13 C -0.137 4.137 14 C -0.081 4.081 15 H 0.079 0.921 16 C -0.097 4.097 17 C 0.149 3.851 18 N -0.746 5.746 19 C -0.249 4.249 20 H 0.072 0.928 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.107 3.893 28 N -0.256 5.256 29 N -0.361 5.361 30 H 0.462 0.538 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.375 0.625 49 H 0.252 0.748 50 H 0.065 0.935 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.143 0.265 -15.106 38.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.086 4.086 5 C -0.228 4.228 6 C -0.191 4.191 7 C 0.397 3.603 8 O -0.458 6.458 9 N -0.340 5.340 10 C -0.012 4.012 11 C -0.115 4.115 12 H 0.117 0.883 13 C -0.194 4.194 14 C -0.101 4.101 15 H 0.097 0.903 16 C -0.135 4.135 17 C 0.022 3.978 18 N -0.389 5.389 19 C -0.381 4.381 20 H 0.090 0.910 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.194 1.194 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.015 4.015 28 N -0.093 5.093 29 N -0.079 5.079 30 H 0.311 0.689 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.175 0.825 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.207 0.793 49 H 0.061 0.939 50 H 0.083 0.917 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -34.590 0.346 -15.173 37.773 hybrid contribution 0.679 -0.210 1.223 1.414 sum -33.911 0.136 -13.950 36.668 Atomic orbital electron populations 1.21763 0.94298 1.02183 1.02647 1.21514 0.96747 0.95221 1.02300 1.20374 0.83598 0.98706 1.05859 1.21739 0.96260 1.04450 0.86139 1.21643 0.90198 1.10154 1.00843 1.21590 0.94437 1.12338 0.90728 1.16937 0.81603 0.76058 0.85681 1.90770 1.86925 1.53138 1.14943 1.48683 1.04727 1.70544 1.10067 1.22487 0.97763 1.01796 0.79198 1.22178 0.95402 0.98914 0.95049 0.88296 1.21794 1.02163 0.94910 1.00536 1.22131 0.93381 0.98859 0.95696 0.90284 1.21541 0.93908 1.01933 0.96149 1.20851 0.83898 0.96757 0.96267 1.42579 1.05639 1.78356 1.12328 1.19678 0.92015 1.34825 0.91533 0.91049 1.25559 0.97671 1.02583 1.00828 1.69818 1.09531 1.52137 1.30362 0.85076 0.78412 0.76983 0.79313 1.19364 1.21827 1.21685 1.22550 0.81139 1.00063 0.97754 1.73546 1.02663 1.19237 1.13874 1.43480 1.02177 1.51313 1.10892 0.68946 0.92652 0.92211 0.91557 0.91844 0.92589 0.88251 0.87808 0.82535 0.90715 0.88185 0.93252 0.92163 0.90589 0.91437 0.90912 0.96651 0.96701 0.79270 0.93917 0.91660 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 71.98 0.71 0.10 16 2 C -0.12 -0.70 5.92 30.59 0.18 -0.52 16 3 C -0.05 -0.23 5.77 29.85 0.17 -0.06 16 4 C 0.04 0.49 6.48 41.40 0.27 0.76 16 5 C -0.20 -4.06 10.73 22.41 0.24 -3.82 16 6 C -0.03 -0.79 6.99 42.46 0.30 -0.49 16 7 C 0.61 19.10 7.90 86.75 0.69 19.78 16 8 O -0.58 -22.47 17.13 -3.91 -0.07 -22.53 16 9 N -0.61 -16.86 3.29 -813.66 -2.68 -19.54 16 10 C 0.11 2.27 5.94 86.53 0.51 2.79 16 11 C -0.10 -1.93 3.17 -9.91 -0.03 -1.96 16 12 H 0.10 1.81 7.85 -2.39 -0.02 1.79 16 13 C -0.14 -2.34 8.90 71.98 0.64 -1.70 16 14 C -0.08 -2.12 2.58 -9.70 -0.02 -2.14 16 15 H 0.08 2.17 7.86 -2.38 -0.02 2.15 16 16 C -0.10 -3.06 4.70 30.59 0.14 -2.91 16 17 C 0.15 6.22 6.15 86.38 0.53 6.75 16 18 N -0.75 -39.56 5.60 -343.46 -1.92 -41.48 16 19 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 20 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 22 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 23 Si 0.97 47.57 29.55 68.60 2.03 49.60 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 C 0.11 3.14 5.92 86.61 0.51 3.66 16 28 N -0.26 -4.79 9.46 -48.17 -0.46 -5.24 16 29 N -0.36 -4.00 6.83 -47.93 -0.33 -4.32 16 30 H 0.46 1.25 8.96 -219.99 -1.97 -0.72 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.92 5.74 -2.39 -0.01 1.91 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 2.12 7.99 -2.38 -0.02 2.10 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.02 0.64 7.67 -2.39 -0.02 0.63 16 48 H 0.38 20.74 7.67 -92.71 -0.71 20.02 16 49 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 50 H 0.06 2.20 7.83 -2.39 -0.02 2.18 16 51 H 0.08 2.26 7.93 -2.39 -0.02 2.24 16 Total: -1.00 -77.88 412.33 1.25 -76.63 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -1.76 Total: 24.37 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.15 Total: 2.61 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.10 Total: -130.68 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.07 Total: -22.53 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -77.88 1.25 -76.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104473297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.890 kcal (2) G-P(sol) polarization free energy of solvation -77.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds