Wall clock time and date at job start Tue Mar 31 2020 19:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.50696 * 109.46953 * 180.02562 * 3 2 1 5 5 C 1.38044 * 126.28857 * 269.99761 * 4 3 2 6 6 C 1.47430 * 126.41468 * 359.96437 * 5 4 3 7 7 O 1.21599 * 119.99934 * 24.30711 * 6 5 4 8 8 N 1.34777 * 120.00039 * 204.30802 * 6 5 4 9 9 C 1.48119 * 127.03395 * 185.22705 * 8 6 5 10 10 C 1.54604 * 103.42174 * 219.28507 * 9 8 6 11 11 H 1.09003 * 110.56981 * 81.16709 * 10 9 8 12 12 C 1.52991 * 110.98688 * 204.37098 * 10 9 8 13 13 N 1.46507 * 109.47298 * 288.65004 * 12 10 9 14 14 C 1.36941 * 119.99721 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00234 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99467 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00339 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00029 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46859 * 60.00196 * 18 16 14 20 20 H 1.48495 * 109.47358 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47078 * 300.00673 * 18 16 14 22 22 C 1.54616 * 102.91108 * 322.86906 * 10 9 8 23 23 H 1.09005 * 110.32378 * 262.80594 * 22 10 9 24 24 C 1.52999 * 110.41366 * 140.63497 * 22 10 9 25 25 C 1.47491 * 127.03367 * 5.54005 * 8 6 5 26 26 C 1.41291 * 107.17212 * 179.97438 * 5 4 3 27 27 N 1.30451 * 108.02139 * 359.97438 * 26 5 4 28 28 N 1.34259 * 126.29469 * 89.68530 * 4 3 2 29 29 C 1.46496 * 125.75516 * 0.03566 * 28 4 3 30 30 H 1.08994 * 109.47144 * 60.00077 * 1 2 3 31 31 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46792 * 299.99899 * 1 2 3 33 33 H 1.08999 * 109.46792 * 240.00101 * 2 1 3 34 34 H 1.08994 * 109.47144 * 119.99923 * 2 1 3 35 35 H 1.09003 * 109.46921 * 299.99940 * 3 2 1 36 36 H 1.08992 * 109.46825 * 59.99878 * 3 2 1 37 37 H 1.09003 * 110.66140 * 337.76513 * 9 8 6 38 38 H 1.08997 * 110.66435 * 100.88582 * 9 8 6 39 39 H 1.08994 * 109.47385 * 48.65644 * 12 10 9 40 40 H 1.09002 * 109.46961 * 168.65543 * 12 10 9 41 41 H 0.96992 * 120.00001 * 0.02562 * 13 12 10 42 42 H 0.97001 * 120.00370 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.46963 * 302.87264 * 24 22 10 44 44 H 1.09001 * 109.47070 * 62.87245 * 24 22 10 45 45 H 1.09000 * 109.47325 * 182.87090 * 24 22 10 46 46 H 1.08997 * 109.91080 * 273.87693 * 25 8 6 47 47 H 1.08995 * 109.91163 * 35.16039 * 25 8 6 48 48 H 1.08005 * 125.98838 * 179.97438 * 26 5 4 49 49 H 1.09002 * 109.47088 * 89.99716 * 29 28 4 50 50 H 1.08994 * 109.47420 * 209.99749 * 29 28 4 51 51 H 1.09000 * 109.46907 * 330.00081 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3645 1.4424 1.1117 6 6 3.9267 1.4430 2.5195 7 8 2.8295 1.0102 2.8152 8 7 4.7426 1.9233 3.4787 9 6 4.5097 1.9013 4.9413 10 6 5.0417 3.2752 5.4101 11 1 4.2973 4.0528 5.2390 12 6 5.4475 3.2315 6.8846 13 7 4.2467 3.1444 7.7193 14 6 4.3629 3.0922 9.0828 15 1 5.3397 3.1157 9.5428 16 6 3.2251 3.0103 9.8736 17 7 2.0346 2.9822 9.3130 18 14 3.3834 2.9398 11.7336 19 1 4.0700 4.1640 12.2186 20 1 2.0317 2.8556 12.3427 21 1 4.1746 1.7433 12.1180 22 6 6.2784 3.4929 4.5080 23 1 7.1868 3.1976 5.0331 24 6 6.3697 4.9566 4.0718 25 6 6.0471 2.5841 3.2864 26 6 5.6993 1.4419 0.6484 27 7 5.6738 1.4411 -0.6558 28 7 4.3413 1.4368 -1.0831 29 6 3.8892 1.4301 -2.4765 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.4461 1.8067 5.1600 38 1 5.0729 1.0934 5.4084 39 1 6.0776 2.3601 7.0624 40 1 6.0000 4.1368 7.1363 41 1 3.3694 3.1230 7.3062 42 1 1.2394 2.9246 9.8657 43 1 5.4507 5.2409 3.5594 44 1 6.5074 5.5891 4.9488 45 1 7.2161 5.0824 3.3966 46 1 6.8371 1.8355 3.2258 47 1 6.0291 3.1833 2.3761 48 1 6.5854 1.4420 1.2659 49 1 3.7775 2.4561 -2.8272 50 1 4.6233 0.9129 -3.0942 51 1 2.9302 0.9164 -2.5449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106367956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:03 Heat of formation + Delta-G solvation = 18.268450 kcal Electronic energy + Delta-G solvation = -29438.340705 eV Core-core repulsion = 25566.230907 eV Total energy + Delta-G solvation = -3872.109798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.58564 -40.82986 -38.87433 -36.51026 -36.16179 -34.44876 -33.88275 -33.01401 -31.73659 -30.72983 -28.51269 -27.54770 -27.21641 -26.75192 -25.03109 -23.39330 -22.76430 -22.18323 -21.46225 -21.03127 -19.91661 -19.09024 -18.29214 -17.19753 -17.03722 -16.74937 -16.56243 -16.26065 -15.87931 -15.55164 -15.38281 -15.18739 -15.11123 -14.82971 -14.50362 -14.34636 -14.07070 -13.93041 -13.67181 -13.56785 -13.45746 -13.29956 -13.11233 -13.03449 -12.85633 -12.70012 -12.49335 -12.40201 -12.21664 -12.15964 -11.95610 -11.92605 -11.71079 -11.60736 -11.50670 -11.41484 -10.92462 -10.86972 -10.39678 -9.81664 -9.50188 -8.97910 -7.92379 -5.21871 0.46989 1.13779 1.37901 1.47660 1.51435 1.57445 2.01675 2.33404 2.57712 3.36875 3.41373 3.42921 3.56752 3.66632 3.83151 3.85367 4.01588 4.07870 4.14129 4.22264 4.27916 4.38721 4.39442 4.41799 4.46142 4.55886 4.57439 4.61120 4.65183 4.68072 4.74257 4.84067 4.85423 4.87958 4.89760 4.93877 5.08445 5.13468 5.15042 5.23630 5.29203 5.32275 5.36026 5.39087 5.41554 5.51251 5.58396 5.85650 6.28838 6.49229 6.63560 7.22057 7.34740 8.11498 8.33397 9.31172 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.002694 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.049234 B =10390.499309 C =11886.746360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.057 4.057 4 C 0.156 3.844 5 C -0.313 4.313 6 C 0.603 3.397 7 O -0.585 6.585 8 N -0.617 5.617 9 C 0.122 3.878 10 C -0.092 4.092 11 H 0.062 0.938 12 C 0.166 3.834 13 N -0.748 5.748 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.080 4.080 17 N -0.972 5.972 18 Si 0.975 3.025 19 H -0.275 1.275 20 H -0.298 1.298 21 H -0.277 1.277 22 C -0.090 4.090 23 H 0.107 0.893 24 C -0.137 4.137 25 C 0.103 3.897 26 C 0.086 3.914 27 N -0.315 5.315 28 N -0.357 5.357 29 C 0.083 3.917 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.212 0.788 49 H 0.096 0.904 50 H 0.104 0.896 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 -1.647 -28.477 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.096 4.096 4 C 0.022 3.978 5 C -0.327 4.327 6 C 0.394 3.606 7 O -0.466 6.466 8 N -0.349 5.349 9 C -0.001 4.001 10 C -0.112 4.112 11 H 0.081 0.919 12 C 0.039 3.961 13 N -0.391 5.391 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.804 3.196 19 H -0.201 1.201 20 H -0.225 1.225 21 H -0.203 1.203 22 C -0.110 4.110 23 H 0.125 0.875 24 C -0.195 4.195 25 C -0.018 4.018 26 C -0.101 4.101 27 N -0.134 5.134 28 N -0.135 5.135 29 C -0.057 4.057 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.228 0.772 49 H 0.114 0.886 50 H 0.122 0.878 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.950 -1.910 -29.518 30.630 hybrid contribution -1.170 -0.094 2.194 2.488 sum 6.780 -2.004 -27.325 28.225 Atomic orbital electron populations 1.21722 0.94077 1.02372 1.02253 1.21345 0.97036 0.94372 1.01819 1.20456 0.84929 0.99566 1.04613 1.21663 0.95184 0.94515 0.86427 1.19887 0.94365 1.26256 0.92222 1.17267 0.82741 0.76451 0.84106 1.90751 1.22445 1.50043 1.83394 1.48615 1.21686 1.58660 1.05963 1.22225 1.00463 0.97855 0.79570 1.22308 0.98263 0.95900 0.94708 0.91910 1.20790 0.88958 0.98299 0.88038 1.42639 1.04378 1.89111 1.02932 1.19631 0.92967 1.40820 0.84088 0.90230 1.25621 0.95052 1.03840 1.02641 1.69837 0.97392 1.59454 1.35640 0.85187 0.76068 0.78288 0.80072 1.20137 1.22450 1.20293 1.22104 0.97758 0.96684 0.94429 0.87528 1.21807 1.02142 0.93865 1.01646 1.22579 0.84053 0.95968 0.99248 1.24471 0.97271 0.96481 0.91878 1.77135 0.97017 1.25994 1.13301 1.48643 1.03306 1.54168 1.07411 1.22403 1.02657 1.05496 0.75096 0.90488 0.92011 0.93939 0.90636 0.93934 0.87307 0.90692 0.93508 0.90851 0.95245 0.95132 0.79776 0.94135 0.93750 0.92571 0.89814 0.88740 0.89150 0.77200 0.88551 0.87759 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.11 -2.03 5.92 30.60 0.18 -1.85 16 3 C -0.06 -1.09 4.55 29.85 0.14 -0.95 16 4 C 0.16 3.45 6.25 42.14 0.26 3.71 16 5 C -0.31 -8.16 5.80 -20.15 -0.12 -8.27 16 6 C 0.60 19.81 7.74 86.66 0.67 20.48 16 7 O -0.59 -23.78 15.34 -4.03 -0.06 -23.84 16 8 N -0.62 -18.29 3.29 -813.93 -2.68 -20.97 16 9 C 0.12 4.27 6.47 86.61 0.56 4.83 16 10 C -0.09 -2.98 2.60 -9.70 -0.03 -3.00 16 11 H 0.06 2.29 7.86 -2.39 -0.02 2.27 16 12 C 0.17 6.46 5.58 86.38 0.48 6.94 16 13 N -0.75 -38.95 5.52 -343.46 -1.90 -40.84 16 14 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 15 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 16 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 17 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 18 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 C -0.09 -1.98 3.17 -9.90 -0.03 -2.01 16 23 H 0.11 1.99 7.85 -2.38 -0.02 1.97 16 24 C -0.14 -2.64 8.90 71.98 0.64 -2.00 16 25 C 0.10 2.09 4.94 86.53 0.43 2.51 16 26 C 0.09 1.81 10.23 85.65 0.88 2.69 16 27 N -0.32 -6.73 12.50 -56.27 -0.70 -7.43 16 28 N -0.36 -6.44 3.98 -354.33 -1.41 -7.85 16 29 C 0.08 0.64 11.06 127.77 1.41 2.05 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.04 1.13 7.75 -2.39 -0.02 1.11 16 35 H 0.11 1.27 7.71 -2.39 -0.02 1.26 16 36 H 0.07 1.91 7.20 -2.39 -0.02 1.89 16 37 H 0.05 2.02 7.81 -2.39 -0.02 2.00 16 38 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 39 H 0.03 1.12 8.00 -2.39 -0.02 1.10 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.37 21.08 7.67 -92.71 -0.71 20.37 16 42 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.41 7.43 -2.39 -0.02 1.39 16 47 H 0.09 1.59 6.42 -2.39 -0.02 1.57 16 48 H 0.21 3.20 6.07 -2.91 -0.02 3.18 16 49 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.11 0.39 7.63 -2.39 -0.02 0.37 16 Total: -1.00 -79.37 408.07 3.26 -76.11 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.20 Total: 30.99 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 7.50 Total: 6.24 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -6.41 Total: -138.65 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.84 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -79.37 3.26 -76.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106367956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.377 kcal (2) G-P(sol) polarization free energy of solvation -79.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds