Wall clock time and date at job start Tue Mar 31 2020 18:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47158 * 2 1 4 4 C 1.34669 * 126.58896 * 274.68262 * 3 2 1 5 5 N 1.34135 * 108.01694 * 179.88040 * 4 3 2 6 6 C 1.30499 * 109.25544 * 0.39454 * 5 4 3 7 7 C 1.50700 * 125.64977 * 179.77163 * 6 5 4 8 8 C 1.50701 * 109.47407 * 304.98920 * 7 6 5 9 9 O 1.21277 * 119.99736 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00000 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99852 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46789 * 176.62695 * 11 10 8 13 13 N 1.46495 * 109.47291 * 54.63312 * 12 11 10 14 14 C 1.36941 * 120.00380 * 62.83272 * 13 12 11 15 15 H 1.08000 * 119.99466 * 354.25512 * 14 13 12 16 16 C 1.38816 * 119.99902 * 174.25694 * 14 13 12 17 17 N 1.31614 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99636 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46954 * 60.00516 * 18 16 14 20 20 H 1.48498 * 109.46968 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47414 * 300.00395 * 18 16 14 22 22 C 1.52997 * 109.47503 * 294.62836 * 12 11 10 23 23 C 1.52992 * 109.47295 * 180.02562 * 22 12 11 24 24 C 1.52997 * 109.47313 * 59.99991 * 23 22 12 25 25 C 1.52999 * 109.47286 * 300.00071 * 24 23 22 26 26 C 1.53000 * 109.47210 * 59.99901 * 25 24 23 27 27 N 1.35039 * 108.70139 * 359.76339 * 6 5 4 28 28 H 0.96996 * 126.40000 * 179.97438 * 27 6 5 29 29 H 1.09002 * 109.46741 * 59.99632 * 1 2 3 30 30 H 1.08992 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46959 * 300.00234 * 1 2 3 32 32 H 1.08993 * 109.47298 * 120.00140 * 2 1 3 33 33 H 1.09004 * 109.46786 * 240.00232 * 2 1 3 34 34 H 1.07997 * 125.99734 * 0.03059 * 4 3 2 35 35 H 1.09006 * 109.46499 * 64.98317 * 7 6 5 36 36 H 1.08998 * 109.47479 * 184.98009 * 7 6 5 37 37 H 0.97001 * 120.00035 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.47334 * 296.63009 * 11 10 8 39 39 H 1.09000 * 109.47226 * 56.62958 * 11 10 8 40 40 H 0.97009 * 120.00145 * 242.83584 * 13 12 11 41 41 H 0.97003 * 120.00275 * 180.02562 * 17 16 14 42 42 H 1.09008 * 109.47080 * 300.00592 * 22 12 11 43 43 H 1.09000 * 109.47124 * 60.00231 * 22 12 11 44 44 H 1.08998 * 109.47502 * 300.00083 * 23 22 12 45 45 H 1.09002 * 109.47392 * 180.02562 * 23 22 12 46 46 H 1.09002 * 109.47110 * 179.97438 * 24 23 22 47 47 H 1.09008 * 109.47190 * 59.99961 * 24 23 22 48 48 H 1.08999 * 109.46750 * 300.00046 * 25 24 23 49 49 H 1.09000 * 109.47463 * 179.97438 * 25 24 23 50 50 H 1.08994 * 109.47338 * 180.02562 * 26 25 24 51 51 H 1.08995 * 109.47184 * 59.99626 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2167 2.2071 -1.0777 5 7 2.6709 3.3951 -0.6517 6 6 2.7830 3.3720 0.6483 7 6 3.2655 4.5113 1.5086 8 6 4.6206 4.9640 1.0292 9 8 5.1433 4.4151 0.0825 10 7 5.2516 5.9787 1.6526 11 6 6.5692 6.4184 1.1869 12 6 7.0215 7.6292 2.0056 13 7 6.9792 7.2977 3.4319 14 6 7.7819 6.3054 3.9285 15 1 8.3770 5.7052 3.2561 16 6 7.8305 6.0712 5.2958 17 7 7.1049 6.8023 6.1151 18 14 8.9249 4.7172 5.9730 19 1 10.3373 4.9922 5.6056 20 1 8.7976 4.6711 7.4518 21 1 8.5095 3.4119 5.3999 22 6 6.0885 8.8097 1.7285 23 6 6.5413 10.0205 2.5467 24 6 7.9708 10.3969 2.1524 25 6 8.9039 9.2165 2.4295 26 6 8.4512 8.0055 1.6113 27 7 2.3947 2.1582 1.0948 28 1 2.3763 1.8636 2.0188 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 2.0292 1.9305 -2.1047 35 1 2.5610 5.3404 1.4421 36 1 3.3387 4.1790 2.5441 37 1 4.8334 6.4179 2.4097 38 1 7.2873 5.6076 1.3101 39 1 6.5091 6.6937 0.1340 40 1 6.3825 7.7810 4.0248 41 1 7.1392 6.6389 7.0706 42 1 6.1200 9.0563 0.6671 43 1 5.0700 8.5414 2.0090 44 1 6.5101 9.7742 3.6080 45 1 5.8763 10.8615 2.3496 46 1 8.2932 11.2599 2.7350 47 1 8.0021 10.6433 1.0909 48 1 8.8726 8.9701 3.4908 49 1 9.9223 9.4844 2.1482 50 1 9.1156 7.1644 1.8090 51 1 8.4824 8.2519 0.5500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115577993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:52 Heat of formation + Delta-G solvation = 6.291905 kcal Electronic energy + Delta-G solvation = -29529.695190 eV Core-core repulsion = 25657.066050 eV Total energy + Delta-G solvation = -3872.629140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.08420 -39.42828 -38.28413 -34.46891 -34.23180 -33.24216 -32.42706 -31.54095 -30.77806 -30.20851 -28.56638 -27.18462 -25.02556 -23.79307 -23.46575 -22.12601 -21.19715 -20.85777 -20.29813 -19.64003 -18.30835 -17.41822 -17.14600 -16.70925 -15.49524 -15.20734 -15.12176 -14.86638 -14.56487 -14.30743 -14.17480 -13.96050 -13.64796 -13.59410 -13.51014 -13.06035 -12.89568 -12.74416 -12.48311 -12.40953 -11.91164 -11.82657 -11.74156 -11.64511 -11.49393 -11.44646 -11.08218 -10.88425 -10.78441 -10.51923 -10.21395 -10.03137 -9.91936 -9.79605 -9.76427 -9.62657 -9.39057 -9.28311 -8.88601 -8.35684 -8.17657 -7.02024 -5.82602 -3.10939 2.00426 2.97332 3.12294 3.24868 3.39440 3.44489 3.46393 3.87965 4.38566 4.54691 4.64644 4.72850 5.02523 5.05475 5.21339 5.27205 5.29378 5.31605 5.35410 5.36446 5.45235 5.55036 5.56333 5.58896 5.62707 5.76252 5.81082 5.85604 5.88752 6.00877 6.07230 6.14742 6.19297 6.24404 6.27435 6.33194 6.48037 6.53782 6.62299 6.80742 6.81989 6.83934 6.84578 7.01158 7.14173 7.22096 7.36414 7.69675 8.11796 8.21367 8.35973 8.78517 9.48347 10.01892 10.38747 11.39319 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003028 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.162354 B = 9243.321447 C =10803.704806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.030 4.030 4 C -0.022 4.022 5 N -0.459 5.459 6 C 0.228 3.772 7 C -0.058 4.058 8 C 0.513 3.487 9 O -0.532 6.532 10 N -0.702 5.702 11 C 0.118 3.882 12 C 0.191 3.809 13 N -0.709 5.709 14 C -0.227 4.227 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.899 3.101 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.289 1.289 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.115 4.115 27 N -0.563 5.563 28 H 0.416 0.584 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.165 0.835 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.402 0.598 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.083 0.917 49 H 0.043 0.957 50 H 0.063 0.937 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 -4.006 -8.532 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.171 4.171 5 N -0.178 5.178 6 C -0.036 4.036 7 C -0.099 4.099 8 C 0.297 3.703 9 O -0.408 6.408 10 N -0.353 5.353 11 C -0.008 4.008 12 C 0.099 3.901 13 N -0.351 5.351 14 C -0.359 4.359 15 H 0.086 0.914 16 C -0.205 4.205 17 N -0.581 5.581 18 Si 0.730 3.270 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.216 1.216 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.155 4.155 27 N -0.166 5.166 28 H 0.253 0.747 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.183 0.817 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.237 0.763 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.062 0.938 50 H 0.082 0.918 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.406 -3.829 -9.712 14.740 hybrid contribution 0.171 -1.345 2.074 2.478 sum -10.235 -5.174 -7.638 13.779 Atomic orbital electron populations 1.21773 0.94577 1.01726 1.02384 1.19956 0.95882 0.89287 1.03315 1.21175 1.09589 0.96341 0.87401 1.22079 1.05993 0.90637 0.98431 1.70245 1.16686 1.22978 1.07860 1.22303 1.03448 0.86807 0.91065 1.19962 0.96622 0.95141 0.98216 1.19928 0.86360 0.80538 0.83496 1.90725 1.67078 1.55365 1.27649 1.45686 1.20144 1.35039 1.34436 1.21827 0.83643 0.98515 0.96806 1.19824 0.93261 0.90475 0.86540 1.42438 1.48615 1.42363 1.01711 1.19038 1.18367 1.08210 0.90249 0.91424 1.24648 1.00288 0.99490 0.96038 1.69630 1.43852 1.41981 1.02606 0.86400 0.80759 0.82000 0.77814 1.21335 1.21876 1.21558 1.21684 0.98700 0.95276 0.99460 1.21472 0.95792 0.96651 1.01385 1.21470 0.95775 0.97910 0.99836 1.21370 0.96588 0.94050 1.02672 1.21793 0.97863 0.98371 0.97452 1.43102 1.51413 1.12490 1.09638 0.74699 0.92087 0.92192 0.92918 0.91379 0.89555 0.81730 0.86641 0.87538 0.76253 0.92047 0.92897 0.78072 0.93602 0.92256 0.92390 0.90751 0.93318 0.93085 0.93243 0.89852 0.93837 0.91822 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.63 16 2 C -0.05 -0.36 6.49 -27.88 -0.18 -0.54 16 3 C -0.03 -0.35 6.49 -81.60 -0.53 -0.88 16 4 C -0.02 -0.31 11.79 -17.81 -0.21 -0.52 16 5 N -0.46 -7.80 10.58 -10.82 -0.11 -7.92 16 6 C 0.23 3.36 6.96 -155.42 -1.08 2.28 16 7 C -0.06 -0.76 6.33 -29.03 -0.18 -0.94 16 8 C 0.51 8.91 7.82 -10.98 -0.09 8.83 16 9 O -0.53 -11.45 15.55 5.56 0.09 -11.37 16 10 N -0.70 -11.78 5.09 -60.30 -0.31 -12.08 16 11 C 0.12 2.14 4.37 -4.04 -0.02 2.12 16 12 C 0.19 3.34 0.41 -131.82 -0.05 3.29 16 13 N -0.71 -14.93 3.40 -47.23 -0.16 -15.09 16 14 C -0.23 -5.60 8.70 -15.06 -0.13 -5.73 16 15 H 0.07 1.71 6.77 -52.49 -0.36 1.35 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.93 -25.70 13.07 55.49 0.73 -24.98 16 18 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.11 -1.70 4.65 -26.74 -0.12 -1.83 16 23 C -0.12 -1.72 5.75 -26.74 -0.15 -1.88 16 24 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 25 C -0.11 -1.84 5.77 -26.73 -0.15 -2.00 16 26 C -0.11 -1.99 4.52 -26.73 -0.12 -2.11 16 27 N -0.56 -6.66 6.15 -6.54 -0.04 -6.70 16 28 H 0.42 3.64 8.96 -40.82 -0.37 3.28 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.17 1.91 8.06 -52.49 -0.42 1.48 16 35 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.40 6.34 7.39 -40.82 -0.30 6.04 16 38 H 0.06 1.28 7.50 -51.93 -0.39 0.89 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.38 8.67 6.63 -40.82 -0.27 8.40 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 43 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 44 H 0.07 1.28 6.92 -51.93 -0.36 0.93 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 48 H 0.08 1.70 7.61 -51.93 -0.39 1.30 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.06 1.21 7.23 -51.93 -0.38 0.84 16 51 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -32.21 402.73 -10.35 -42.56 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -8.67 Total: 15.68 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.91 Total: -2.67 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: 0.10 Total: -66.77 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.21 -10.35 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115577993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.847 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds