Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47158 * 2 1 4 4 C 1.34669 * 126.58896 * 274.68262 * 3 2 1 5 5 N 1.34135 * 108.01694 * 179.88040 * 4 3 2 6 6 C 1.30499 * 109.25544 * 0.39454 * 5 4 3 7 7 C 1.50700 * 125.64977 * 179.77163 * 6 5 4 8 8 C 1.50701 * 109.47407 * 304.98920 * 7 6 5 9 9 O 1.21277 * 119.99736 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00000 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99852 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46789 * 176.62695 * 11 10 8 13 13 N 1.46495 * 109.47291 * 54.63312 * 12 11 10 14 14 C 1.36941 * 120.00380 * 62.83272 * 13 12 11 15 15 H 1.08000 * 119.99466 * 354.25512 * 14 13 12 16 16 C 1.38816 * 119.99902 * 174.25694 * 14 13 12 17 17 N 1.31614 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99636 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46954 * 60.00516 * 18 16 14 20 20 H 1.48498 * 109.46968 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47414 * 300.00395 * 18 16 14 22 22 C 1.52997 * 109.47503 * 294.62836 * 12 11 10 23 23 C 1.52992 * 109.47295 * 180.02562 * 22 12 11 24 24 C 1.52997 * 109.47313 * 59.99991 * 23 22 12 25 25 C 1.52999 * 109.47286 * 300.00071 * 24 23 22 26 26 C 1.53000 * 109.47210 * 59.99901 * 25 24 23 27 27 N 1.35039 * 108.70139 * 359.76339 * 6 5 4 28 28 H 0.96996 * 126.40000 * 179.97438 * 27 6 5 29 29 H 1.09002 * 109.46741 * 59.99632 * 1 2 3 30 30 H 1.08992 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46959 * 300.00234 * 1 2 3 32 32 H 1.08993 * 109.47298 * 120.00140 * 2 1 3 33 33 H 1.09004 * 109.46786 * 240.00232 * 2 1 3 34 34 H 1.07997 * 125.99734 * 0.03059 * 4 3 2 35 35 H 1.09006 * 109.46499 * 64.98317 * 7 6 5 36 36 H 1.08998 * 109.47479 * 184.98009 * 7 6 5 37 37 H 0.97001 * 120.00035 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.47334 * 296.63009 * 11 10 8 39 39 H 1.09000 * 109.47226 * 56.62958 * 11 10 8 40 40 H 0.97009 * 120.00145 * 242.83584 * 13 12 11 41 41 H 0.97003 * 120.00275 * 180.02562 * 17 16 14 42 42 H 1.09008 * 109.47080 * 300.00592 * 22 12 11 43 43 H 1.09000 * 109.47124 * 60.00231 * 22 12 11 44 44 H 1.08998 * 109.47502 * 300.00083 * 23 22 12 45 45 H 1.09002 * 109.47392 * 180.02562 * 23 22 12 46 46 H 1.09002 * 109.47110 * 179.97438 * 24 23 22 47 47 H 1.09008 * 109.47190 * 59.99961 * 24 23 22 48 48 H 1.08999 * 109.46750 * 300.00046 * 25 24 23 49 49 H 1.09000 * 109.47463 * 179.97438 * 25 24 23 50 50 H 1.08994 * 109.47338 * 180.02562 * 26 25 24 51 51 H 1.08995 * 109.47184 * 59.99626 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2167 2.2071 -1.0777 5 7 2.6709 3.3951 -0.6517 6 6 2.7830 3.3720 0.6483 7 6 3.2655 4.5113 1.5086 8 6 4.6206 4.9640 1.0292 9 8 5.1433 4.4151 0.0825 10 7 5.2516 5.9787 1.6526 11 6 6.5692 6.4184 1.1869 12 6 7.0215 7.6292 2.0056 13 7 6.9792 7.2977 3.4319 14 6 7.7819 6.3054 3.9285 15 1 8.3770 5.7052 3.2561 16 6 7.8305 6.0712 5.2958 17 7 7.1049 6.8023 6.1151 18 14 8.9249 4.7172 5.9730 19 1 10.3373 4.9922 5.6056 20 1 8.7976 4.6711 7.4518 21 1 8.5095 3.4119 5.3999 22 6 6.0885 8.8097 1.7285 23 6 6.5413 10.0205 2.5467 24 6 7.9708 10.3969 2.1524 25 6 8.9039 9.2165 2.4295 26 6 8.4512 8.0055 1.6113 27 7 2.3947 2.1582 1.0948 28 1 2.3763 1.8636 2.0188 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 2.0292 1.9305 -2.1047 35 1 2.5610 5.3404 1.4421 36 1 3.3387 4.1790 2.5441 37 1 4.8334 6.4179 2.4097 38 1 7.2873 5.6076 1.3101 39 1 6.5091 6.6937 0.1340 40 1 6.3825 7.7810 4.0248 41 1 7.1392 6.6389 7.0706 42 1 6.1200 9.0563 0.6671 43 1 5.0700 8.5414 2.0090 44 1 6.5101 9.7742 3.6080 45 1 5.8763 10.8615 2.3496 46 1 8.2932 11.2599 2.7350 47 1 8.0021 10.6433 1.0909 48 1 8.8726 8.9701 3.4908 49 1 9.9223 9.4844 2.1482 50 1 9.1156 7.1644 1.8090 51 1 8.4824 8.2519 0.5500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115577993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = -14.138951 kcal Electronic energy + Delta-G solvation = -29530.581138 eV Core-core repulsion = 25657.066050 eV Total energy + Delta-G solvation = -3873.515088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.08310 -40.85468 -39.69479 -35.83890 -35.09217 -34.98703 -33.49068 -32.91903 -32.03375 -31.52792 -30.19631 -28.18582 -26.33094 -25.67373 -24.23313 -23.45772 -22.36779 -21.85164 -21.59144 -20.88434 -19.78194 -19.01709 -18.36273 -18.03563 -16.94050 -16.56493 -16.42367 -16.07163 -15.76094 -15.60134 -15.38287 -15.19921 -15.03453 -14.86686 -14.45289 -14.36696 -14.29974 -13.92735 -13.67756 -13.38706 -13.23876 -13.19236 -12.98821 -12.88444 -12.78093 -12.57907 -12.49570 -12.43419 -12.06688 -12.02410 -11.86057 -11.65758 -11.29507 -11.07756 -10.97059 -10.91718 -10.79141 -10.68212 -10.64679 -9.83123 -9.16284 -8.88162 -7.85727 -5.09624 1.02722 1.45487 1.47988 1.51858 1.78701 1.97548 2.20174 2.57566 2.65353 3.37572 3.46879 3.84326 3.90174 3.95824 4.01455 4.06345 4.10767 4.16387 4.17811 4.38603 4.42615 4.45372 4.51250 4.56818 4.69567 4.71382 4.76720 4.78685 4.81310 4.84315 4.94077 4.96739 4.99520 5.06361 5.09757 5.20679 5.24496 5.35512 5.41507 5.48629 5.51849 5.53380 5.61355 5.63703 5.73768 5.82564 5.83091 6.37307 6.48092 6.76001 7.19393 7.42263 7.46493 8.19007 8.46634 9.36299 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003028 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.162354 B = 9243.321447 C =10803.704806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.012 4.012 4 C -0.058 4.058 5 N -0.504 5.504 6 C 0.206 3.794 7 C -0.049 4.049 8 C 0.510 3.490 9 O -0.578 6.578 10 N -0.697 5.697 11 C 0.126 3.874 12 C 0.191 3.809 13 N -0.706 5.706 14 C -0.206 4.206 15 H 0.058 0.942 16 C -0.060 4.060 17 N -0.958 5.958 18 Si 0.944 3.056 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.290 1.290 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.105 4.105 26 C -0.115 4.115 27 N -0.554 5.554 28 H 0.430 0.570 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.409 0.591 38 H 0.028 0.972 39 H 0.059 0.941 40 H 0.379 0.621 41 H 0.247 0.753 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.042 0.958 49 H 0.055 0.945 50 H 0.037 0.963 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 -3.937 -9.194 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.128 4.128 4 C -0.206 4.206 5 N -0.223 5.223 6 C -0.058 4.058 7 C -0.090 4.090 8 C 0.295 3.705 9 O -0.458 6.458 10 N -0.348 5.348 11 C -0.001 4.001 12 C 0.100 3.900 13 N -0.347 5.347 14 C -0.338 4.338 15 H 0.076 0.924 16 C -0.253 4.253 17 N -0.609 5.609 18 Si 0.776 3.224 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.218 1.218 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.155 4.155 27 N -0.159 5.159 28 H 0.270 0.730 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.194 0.806 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.245 0.755 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.213 0.787 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.055 0.945 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.720 -3.755 -10.377 16.098 hybrid contribution 0.600 -1.401 2.160 2.644 sum -11.120 -5.156 -8.217 14.757 Atomic orbital electron populations 1.21735 0.93455 1.02855 1.01955 1.20118 0.96688 0.86894 1.04557 1.21727 1.07174 0.97365 0.86560 1.22451 1.07572 0.90689 0.99915 1.70150 1.17966 1.24839 1.09382 1.22463 1.04418 0.88053 0.90904 1.19996 0.94247 0.95788 0.98999 1.20650 0.87523 0.79694 0.82612 1.90702 1.68563 1.56755 1.29733 1.45662 1.19549 1.35070 1.34474 1.21656 0.83686 0.97422 0.97324 1.19993 0.94339 0.91414 0.84215 1.42436 1.47698 1.41382 1.03213 1.19128 1.17045 1.07757 0.89895 0.92379 1.25097 1.02065 1.01493 0.96614 1.69730 1.45573 1.43487 1.02155 0.85668 0.79552 0.80343 0.76860 1.21568 1.22422 1.21761 1.21659 0.98223 0.93941 1.00718 1.21433 0.96625 0.97386 0.99509 1.21452 0.94809 0.96899 1.01384 1.21295 0.98187 0.94943 0.99888 1.21788 0.96895 0.97730 0.99059 1.43091 1.50569 1.11700 1.10548 0.72972 0.92617 0.90282 0.93277 0.89998 0.88436 0.80592 0.84049 0.84946 0.75462 0.95399 0.92240 0.78745 0.94420 0.90227 0.91581 0.93596 0.90694 0.92231 0.90969 0.93930 0.92654 0.94451 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.04 -0.60 6.49 29.85 0.19 -0.40 16 3 C -0.01 -0.26 6.49 40.95 0.27 0.01 16 4 C -0.06 -1.63 11.79 83.52 0.98 -0.64 16 5 N -0.50 -17.19 10.58 -188.13 -1.99 -19.18 16 6 C 0.21 5.92 6.96 138.13 0.96 6.89 16 7 C -0.05 -1.22 6.33 29.10 0.18 -1.04 16 8 C 0.51 17.49 7.82 87.66 0.69 18.18 16 9 O -0.58 -25.26 15.55 -3.02 -0.05 -25.30 16 10 N -0.70 -22.95 5.09 -463.07 -2.36 -25.31 16 11 C 0.13 4.53 4.37 86.38 0.38 4.91 16 12 C 0.19 6.55 0.41 3.61 0.00 6.55 16 13 N -0.71 -29.88 3.40 -303.34 -1.03 -30.91 16 14 C -0.21 -10.29 8.70 84.03 0.73 -9.55 16 15 H 0.06 3.00 6.77 -2.91 -0.02 2.98 16 16 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 17 N -0.96 -53.62 13.07 21.65 0.28 -53.34 16 18 Si 0.94 44.96 29.55 68.60 2.03 46.99 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 C -0.11 -2.98 4.65 30.59 0.14 -2.84 16 23 C -0.11 -3.08 5.75 30.59 0.18 -2.90 16 24 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 25 C -0.11 -3.47 5.77 30.59 0.18 -3.29 16 26 C -0.11 -3.90 4.52 30.60 0.14 -3.76 16 27 N -0.55 -12.35 6.15 -174.60 -1.07 -13.42 16 28 H 0.43 6.69 8.96 -92.71 -0.83 5.86 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.18 4.11 8.06 -2.91 -0.02 4.09 16 35 H 0.14 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.41 12.42 7.39 -92.71 -0.69 11.74 16 38 H 0.03 1.18 7.50 -2.39 -0.02 1.17 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.38 17.16 6.63 -92.70 -0.61 16.55 16 41 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.07 1.74 7.28 -2.39 -0.02 1.72 16 44 H 0.05 1.54 6.92 -2.39 -0.02 1.52 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.04 1.75 7.61 -2.39 -0.02 1.73 16 49 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.04 1.44 7.23 -2.39 -0.02 1.42 16 51 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -72.05 402.73 1.00 -71.05 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -1.18 Total: 43.65 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.38 Total: 5.79 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -6.17 Total: -142.16 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -72.05 1.00 -71.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115577993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.907 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds