Wall clock time and date at job start Tue Mar 31 2020 19:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.50703 * 109.47047 * 179.97438 * 3 2 1 5 5 C 1.35360 * 126.38309 * 84.99780 * 4 3 2 6 6 C 1.41505 * 105.50240 * 180.02562 * 5 4 3 7 7 C 1.47707 * 126.52000 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99864 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00269 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46803 * 176.62311 * 10 9 7 12 12 N 1.46499 * 109.47377 * 54.63316 * 11 10 9 13 13 C 1.36934 * 119.99958 * 62.83744 * 12 11 10 14 14 H 1.07998 * 120.00484 * 354.24668 * 13 12 11 15 15 C 1.38817 * 119.99854 * 173.97503 * 13 12 11 16 16 N 1.31612 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99857 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47256 * 60.00186 * 17 15 13 19 19 H 1.48499 * 109.47011 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47235 * 299.99789 * 17 15 13 21 21 C 1.53005 * 109.46945 * 174.63064 * 11 10 9 22 22 C 1.53001 * 109.47149 * 180.02562 * 21 11 10 23 23 C 1.52997 * 109.46954 * 299.99640 * 22 21 11 24 24 C 1.53005 * 109.46899 * 60.00206 * 23 22 21 25 25 C 1.52997 * 109.47323 * 294.62805 * 11 10 9 26 26 N 1.31808 * 106.96372 * 0.23942 * 6 5 4 27 27 N 1.28468 * 110.06939 * 359.59405 * 26 6 5 28 28 H 0.97008 * 124.88266 * 180.19873 * 27 26 6 29 29 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47180 * 300.00166 * 1 2 3 31 31 H 1.09006 * 109.47157 * 59.99930 * 1 2 3 32 32 H 1.08999 * 109.47180 * 239.99834 * 2 1 3 33 33 H 1.09004 * 109.46656 * 120.00168 * 2 1 3 34 34 H 1.08999 * 109.47227 * 59.99863 * 3 2 1 35 35 H 1.09004 * 109.46752 * 299.99740 * 3 2 1 36 36 H 1.07999 * 127.25233 * 0.04005 * 5 4 3 37 37 H 0.96999 * 119.99947 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.47147 * 56.62569 * 10 9 7 39 39 H 1.08991 * 109.47479 * 296.62556 * 10 9 7 40 40 H 0.96995 * 119.99919 * 242.83938 * 12 11 10 41 41 H 0.97010 * 120.00028 * 179.97438 * 16 15 13 42 42 H 1.09006 * 109.47053 * 299.99717 * 21 11 10 43 43 H 1.08997 * 109.47078 * 59.99850 * 21 11 10 44 44 H 1.08996 * 109.47050 * 179.97438 * 22 21 11 45 45 H 1.08997 * 109.47521 * 59.99794 * 22 21 11 46 46 H 1.09000 * 109.47612 * 300.00494 * 23 22 21 47 47 H 1.09001 * 109.47153 * 179.97438 * 23 22 21 48 48 H 1.09008 * 109.46787 * 179.97438 * 24 23 22 49 49 H 1.08997 * 109.47078 * 60.00152 * 24 23 22 50 50 H 1.08998 * 109.47200 * 299.99870 * 25 11 10 51 51 H 1.09000 * 109.46986 * 60.00783 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3504 1.3473 -1.0846 6 6 5.6723 1.3907 -0.5816 7 6 6.9170 1.3204 -1.3737 8 8 6.8623 1.2137 -2.5835 9 7 8.1133 1.3746 -0.7554 10 6 9.3478 1.3043 -1.5411 11 6 10.5529 1.4712 -0.6132 12 7 10.4808 0.4809 0.4640 13 6 10.5338 -0.8555 0.1701 14 1 10.5351 -1.1825 -0.8592 15 6 10.5917 -1.7898 1.1952 16 7 10.5961 -1.3911 2.4494 17 14 10.6634 -3.6129 0.7943 18 1 11.8754 -3.8942 -0.0163 19 1 10.7193 -4.3951 2.0553 20 1 9.4530 -3.9986 0.0253 21 6 11.8426 1.2647 -1.4102 22 6 13.0477 1.4309 -0.4823 23 6 13.0389 2.8382 0.1178 24 6 11.7492 3.0447 0.9148 25 6 10.5439 2.8787 -0.0135 26 7 5.5817 1.5000 0.7289 27 7 4.3476 1.5369 1.0839 28 1 4.0357 1.6175 1.9989 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8901 36 1 4.0465 1.2574 -2.1171 37 1 8.1569 1.4593 0.2099 38 1 9.3501 2.0998 -2.2862 39 1 9.4056 0.3377 -2.0414 40 1 10.3954 0.7718 1.3853 41 1 10.6361 -2.0440 3.1658 42 1 11.8491 0.2619 -1.8374 43 1 11.8963 2.0014 -2.2117 44 1 13.9664 1.2834 -1.0500 45 1 12.9938 0.6939 0.3189 46 1 13.0928 3.5753 -0.6833 47 1 13.8972 2.9565 0.7793 48 1 11.7432 4.0473 1.3428 49 1 11.6953 2.3077 1.7160 50 1 10.5977 3.6154 -0.8150 51 1 9.6252 3.0257 0.5543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115658708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:17 Heat of formation + Delta-G solvation = 17.242091 kcal Electronic energy + Delta-G solvation = -29656.827274 eV Core-core repulsion = 25784.672970 eV Total energy + Delta-G solvation = -3872.154304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.59693 -39.30495 -38.13707 -35.58256 -34.34944 -33.19248 -31.86364 -31.16091 -30.79587 -30.16231 -28.50414 -26.70467 -25.70131 -23.72003 -23.20741 -22.17877 -21.96682 -20.99145 -20.34028 -19.49334 -18.23599 -17.68690 -17.09663 -16.60330 -15.69098 -15.39367 -15.27487 -14.97202 -14.50979 -14.21788 -14.04542 -13.89028 -13.67634 -13.58958 -13.53171 -13.23760 -12.96962 -12.68742 -12.49401 -12.00342 -11.85058 -11.74843 -11.63657 -11.59840 -11.49138 -11.08457 -11.05194 -10.81295 -10.72761 -10.67343 -10.47683 -10.14827 -9.98785 -9.80243 -9.63745 -9.51590 -9.27821 -9.24443 -8.92639 -8.81291 -8.31890 -6.94120 -5.74111 -3.02495 1.80037 2.18103 2.89341 3.46349 3.50633 3.52548 3.72975 3.87797 4.42434 4.54713 4.62058 4.71329 4.76085 5.04719 5.13917 5.26341 5.33004 5.35768 5.38023 5.45902 5.51976 5.62807 5.66840 5.67863 5.74495 5.75818 5.80649 5.89862 5.96024 6.00719 6.04660 6.11597 6.18605 6.22864 6.26087 6.36030 6.46667 6.52018 6.56968 6.66023 6.85668 6.88154 6.89320 7.00688 7.05282 7.16800 7.26742 7.76802 7.88868 8.24461 8.43940 8.76675 9.56431 10.10017 10.46595 11.47837 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003290 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.712901 B = 8508.381092 C = 9881.621208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.048 4.048 4 C 0.008 3.992 5 C -0.177 4.177 6 C -0.003 4.003 7 C 0.595 3.405 8 O -0.551 6.551 9 N -0.684 5.684 10 C 0.114 3.886 11 C 0.191 3.809 12 N -0.709 5.709 13 C -0.228 4.228 14 H 0.068 0.932 15 C -0.008 4.008 16 N -0.931 5.931 17 Si 0.899 3.101 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.288 1.288 21 C -0.114 4.114 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.114 4.114 26 N -0.249 5.249 27 N -0.382 5.382 28 H 0.442 0.558 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.159 0.841 37 H 0.410 0.590 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.385 0.615 41 H 0.253 0.747 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 9.768 -2.441 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.206 4.206 6 C -0.164 4.164 7 C 0.378 3.622 8 O -0.428 6.428 9 N -0.334 5.334 10 C -0.012 4.012 11 C 0.099 3.901 12 N -0.350 5.350 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.204 4.204 16 N -0.579 5.579 17 Si 0.730 3.270 18 H -0.213 1.213 19 H -0.219 1.219 20 H -0.215 1.215 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.152 4.152 26 N -0.085 5.085 27 N -0.096 5.096 28 H 0.286 0.714 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.177 0.823 37 H 0.247 0.753 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.220 0.780 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.615 9.593 -2.426 16.033 hybrid contribution -0.603 -1.145 0.419 1.361 sum -13.218 8.447 -2.007 15.815 Atomic orbital electron populations 1.21777 0.95334 1.01989 1.01865 1.21559 0.95852 0.95613 1.03077 1.20183 0.86487 0.98182 1.03798 1.21375 0.94868 1.07970 0.87497 1.21472 0.90583 1.08880 0.99623 1.22088 0.95441 1.09124 0.89773 1.16881 0.81907 0.77130 0.86252 1.90740 1.87027 1.51740 1.13335 1.45651 1.04629 1.71199 1.11896 1.21934 0.84181 1.01108 0.94027 1.19818 0.91493 0.89246 0.89562 1.42429 1.87334 1.01418 1.03862 1.19030 1.42058 0.82557 0.92307 0.91388 1.24648 1.03021 0.97445 0.95268 1.69639 1.57756 1.32764 0.97761 0.86397 0.77847 0.86080 0.76662 1.21348 1.21923 1.21476 1.21789 0.95474 1.00993 0.97145 1.21369 0.96371 0.96978 0.99965 1.21469 0.97178 0.97579 0.98721 1.21481 0.94436 1.00587 0.98770 1.21699 0.98108 0.96503 0.98900 1.73677 1.01092 1.18546 1.15158 1.43327 1.03053 1.53510 1.09716 0.71385 0.92465 0.92734 0.92467 0.91079 0.91886 0.90771 0.89166 0.82312 0.75333 0.92695 0.91644 0.78023 0.93677 0.91744 0.93713 0.93831 0.89804 0.93263 0.93102 0.93361 0.90711 0.92281 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 3 C -0.05 -0.34 5.77 -27.88 -0.16 -0.50 16 4 C 0.01 0.09 6.48 -82.21 -0.53 -0.44 16 5 C -0.18 -2.53 10.73 -39.36 -0.42 -2.95 16 6 C 0.00 -0.05 7.13 -82.77 -0.59 -0.64 16 7 C 0.59 11.70 7.82 -12.39 -0.10 11.60 16 8 O -0.55 -12.01 16.93 5.30 0.09 -11.92 16 9 N -0.68 -13.14 5.09 -61.30 -0.31 -13.45 16 10 C 0.11 2.17 4.37 -4.04 -0.02 2.15 16 11 C 0.19 3.53 0.41 -131.82 -0.05 3.47 16 12 N -0.71 -15.88 3.40 -47.23 -0.16 -16.04 16 13 C -0.23 -5.89 8.70 -15.06 -0.13 -6.03 16 14 H 0.07 1.77 6.77 -52.49 -0.36 1.42 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 16 N -0.93 -26.83 13.07 55.49 0.73 -26.10 16 17 Si 0.90 22.36 29.55 -169.99 -5.02 17.34 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C -0.11 -2.02 4.52 -26.73 -0.12 -2.14 16 22 C -0.11 -1.89 5.77 -26.73 -0.15 -2.05 16 23 C -0.11 -1.70 5.92 -26.73 -0.16 -1.85 16 24 C -0.12 -1.81 5.75 -26.70 -0.15 -1.97 16 25 C -0.11 -1.84 4.65 -26.71 -0.12 -1.96 16 26 N -0.25 -3.96 11.92 33.42 0.40 -3.56 16 27 N -0.38 -4.47 6.83 33.50 0.23 -4.24 16 28 H 0.44 3.54 8.96 -190.43 -1.71 1.83 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.41 7.98 7.12 -40.82 -0.29 7.69 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.39 7.50 -51.93 -0.39 1.00 16 40 H 0.38 9.31 6.63 -40.82 -0.27 9.04 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.06 1.25 7.23 -51.93 -0.38 0.87 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.75 7.60 -51.93 -0.39 1.36 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 49 H 0.07 1.36 6.92 -51.93 -0.36 1.01 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.06 0.94 7.28 -51.93 -0.38 0.56 16 LS Contribution 403.83 15.07 6.09 6.09 Total: -1.00 -31.29 403.83 -10.57 -41.86 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -10.00 Total: 15.21 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.60 Total: -5.19 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: 0.88 Total: -63.39 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.29 -10.57 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115658708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.104 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds