Wall clock time and date at job start Tue Mar 31 2020 19:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.50703 * 109.47047 * 179.97438 * 3 2 1 5 5 C 1.35360 * 126.38309 * 84.99780 * 4 3 2 6 6 C 1.41505 * 105.50240 * 180.02562 * 5 4 3 7 7 C 1.47707 * 126.52000 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99864 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00269 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46803 * 176.62311 * 10 9 7 12 12 N 1.46499 * 109.47377 * 54.63316 * 11 10 9 13 13 C 1.36934 * 119.99958 * 62.83744 * 12 11 10 14 14 H 1.07998 * 120.00484 * 354.24668 * 13 12 11 15 15 C 1.38817 * 119.99854 * 173.97503 * 13 12 11 16 16 N 1.31612 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99857 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47256 * 60.00186 * 17 15 13 19 19 H 1.48499 * 109.47011 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47235 * 299.99789 * 17 15 13 21 21 C 1.53005 * 109.46945 * 174.63064 * 11 10 9 22 22 C 1.53001 * 109.47149 * 180.02562 * 21 11 10 23 23 C 1.52997 * 109.46954 * 299.99640 * 22 21 11 24 24 C 1.53005 * 109.46899 * 60.00206 * 23 22 21 25 25 C 1.52997 * 109.47323 * 294.62805 * 11 10 9 26 26 N 1.31808 * 106.96372 * 0.23942 * 6 5 4 27 27 N 1.28468 * 110.06939 * 359.59405 * 26 6 5 28 28 H 0.97008 * 124.88266 * 180.19873 * 27 26 6 29 29 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47180 * 300.00166 * 1 2 3 31 31 H 1.09006 * 109.47157 * 59.99930 * 1 2 3 32 32 H 1.08999 * 109.47180 * 239.99834 * 2 1 3 33 33 H 1.09004 * 109.46656 * 120.00168 * 2 1 3 34 34 H 1.08999 * 109.47227 * 59.99863 * 3 2 1 35 35 H 1.09004 * 109.46752 * 299.99740 * 3 2 1 36 36 H 1.07999 * 127.25233 * 0.04005 * 5 4 3 37 37 H 0.96999 * 119.99947 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.47147 * 56.62569 * 10 9 7 39 39 H 1.08991 * 109.47479 * 296.62556 * 10 9 7 40 40 H 0.96995 * 119.99919 * 242.83938 * 12 11 10 41 41 H 0.97010 * 120.00028 * 179.97438 * 16 15 13 42 42 H 1.09006 * 109.47053 * 299.99717 * 21 11 10 43 43 H 1.08997 * 109.47078 * 59.99850 * 21 11 10 44 44 H 1.08996 * 109.47050 * 179.97438 * 22 21 11 45 45 H 1.08997 * 109.47521 * 59.99794 * 22 21 11 46 46 H 1.09000 * 109.47612 * 300.00494 * 23 22 21 47 47 H 1.09001 * 109.47153 * 179.97438 * 23 22 21 48 48 H 1.09008 * 109.46787 * 179.97438 * 24 23 22 49 49 H 1.08997 * 109.47078 * 60.00152 * 24 23 22 50 50 H 1.08998 * 109.47200 * 299.99870 * 25 11 10 51 51 H 1.09000 * 109.46986 * 60.00783 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3504 1.3473 -1.0846 6 6 5.6723 1.3907 -0.5816 7 6 6.9170 1.3204 -1.3737 8 8 6.8623 1.2137 -2.5835 9 7 8.1133 1.3746 -0.7554 10 6 9.3478 1.3043 -1.5411 11 6 10.5529 1.4712 -0.6132 12 7 10.4808 0.4809 0.4640 13 6 10.5338 -0.8555 0.1701 14 1 10.5351 -1.1825 -0.8592 15 6 10.5917 -1.7898 1.1952 16 7 10.5961 -1.3911 2.4494 17 14 10.6634 -3.6129 0.7943 18 1 11.8754 -3.8942 -0.0163 19 1 10.7193 -4.3951 2.0553 20 1 9.4530 -3.9986 0.0253 21 6 11.8426 1.2647 -1.4102 22 6 13.0477 1.4309 -0.4823 23 6 13.0389 2.8382 0.1178 24 6 11.7492 3.0447 0.9148 25 6 10.5439 2.8787 -0.0135 26 7 5.5817 1.5000 0.7289 27 7 4.3476 1.5369 1.0839 28 1 4.0357 1.6175 1.9989 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8901 36 1 4.0465 1.2574 -2.1171 37 1 8.1569 1.4593 0.2099 38 1 9.3501 2.0998 -2.2862 39 1 9.4056 0.3377 -2.0414 40 1 10.3954 0.7718 1.3853 41 1 10.6361 -2.0440 3.1658 42 1 11.8491 0.2619 -1.8374 43 1 11.8963 2.0014 -2.2117 44 1 13.9664 1.2834 -1.0500 45 1 12.9938 0.6939 0.3189 46 1 13.0928 3.5753 -0.6833 47 1 13.8972 2.9565 0.7793 48 1 11.7432 4.0473 1.3428 49 1 11.6953 2.3077 1.7160 50 1 10.5977 3.6154 -0.8150 51 1 9.6252 3.0257 0.5543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115658708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:16 Heat of formation + Delta-G solvation = -2.576964 kcal Electronic energy + Delta-G solvation = -29657.686693 eV Core-core repulsion = 25784.672970 eV Total energy + Delta-G solvation = -3873.013723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.69058 -40.83367 -39.64975 -36.24383 -35.87203 -35.05090 -33.17897 -32.55534 -31.85186 -31.53719 -30.25344 -27.50145 -27.05694 -25.70090 -24.54794 -23.37091 -22.85238 -21.91999 -21.73903 -20.93878 -19.78141 -19.02364 -18.66502 -17.97972 -16.98980 -16.78560 -16.56291 -15.99969 -15.93930 -15.86676 -15.50432 -15.27432 -15.00792 -14.79337 -14.65414 -14.38960 -14.30442 -13.95914 -13.53786 -13.39633 -13.24520 -13.03796 -12.90546 -12.79644 -12.59697 -12.52201 -12.45636 -12.12723 -12.08319 -11.87964 -11.86617 -11.66862 -11.53580 -11.32088 -11.25581 -11.05495 -10.71119 -10.69561 -10.46928 -9.95134 -9.87793 -8.89989 -7.86623 -5.11040 0.54509 1.11487 1.44419 1.45332 1.50101 1.91628 2.33516 2.45201 2.59066 3.42972 3.46725 3.66329 3.82282 3.93272 3.97934 4.03005 4.14449 4.17201 4.26684 4.40788 4.47107 4.48648 4.55550 4.68106 4.70145 4.76496 4.77776 4.82068 4.84211 4.92516 4.95262 4.97243 4.98772 5.06787 5.18937 5.22862 5.23998 5.31973 5.36289 5.44541 5.47459 5.50062 5.51728 5.57343 5.61620 5.69278 5.82916 6.12585 6.35712 6.56326 6.90531 7.23061 7.44296 8.17694 8.43447 9.35719 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003290 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.712901 B = 8508.381092 C = 9881.621208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.043 4.043 4 C 0.037 3.963 5 C -0.200 4.200 6 C -0.035 4.035 7 C 0.590 3.410 8 O -0.580 6.580 9 N -0.684 5.684 10 C 0.119 3.881 11 C 0.189 3.811 12 N -0.709 5.709 13 C -0.208 4.208 14 H 0.062 0.938 15 C -0.064 4.064 16 N -0.960 5.960 17 Si 0.946 3.054 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.293 1.293 21 C -0.112 4.112 22 C -0.106 4.106 23 C -0.106 4.106 24 C -0.112 4.112 25 C -0.108 4.108 26 N -0.272 5.272 27 N -0.365 5.365 28 H 0.459 0.541 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.408 0.592 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.376 0.624 41 H 0.246 0.754 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 11.771 -2.716 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.082 4.082 4 C -0.090 4.090 5 C -0.228 4.228 6 C -0.195 4.195 7 C 0.375 3.625 8 O -0.460 6.460 9 N -0.333 5.333 10 C -0.008 4.008 11 C 0.098 3.902 12 N -0.349 5.349 13 C -0.340 4.340 14 H 0.080 0.920 15 C -0.257 4.257 16 N -0.611 5.611 17 Si 0.778 3.222 18 H -0.208 1.208 19 H -0.224 1.224 20 H -0.220 1.220 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.146 4.146 26 N -0.109 5.109 27 N -0.081 5.081 28 H 0.307 0.693 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.181 0.819 37 H 0.245 0.755 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.209 0.791 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.935 11.614 -2.717 18.343 hybrid contribution -0.275 -1.719 0.462 1.801 sum -14.211 9.895 -2.255 17.463 Atomic orbital electron populations 1.21748 0.93850 1.02203 1.02816 1.21535 0.97094 0.95365 1.02079 1.20375 0.83208 0.98581 1.06033 1.21866 0.96457 1.04595 0.86037 1.21670 0.89901 1.10276 1.00913 1.21887 0.95376 1.11739 0.90487 1.17278 0.82714 0.76267 0.86209 1.90700 1.87585 1.53161 1.14556 1.45670 1.04771 1.71144 1.11692 1.21872 0.84439 1.00119 0.94321 1.20044 0.91588 0.89920 0.88617 1.42461 1.86960 1.01030 1.04444 1.19183 1.38960 0.84177 0.91699 0.91988 1.25171 1.04802 1.00243 0.95441 1.69757 1.60214 1.33010 0.98154 0.85614 0.77558 0.83007 0.75997 1.20849 1.22415 1.22021 1.21769 0.95025 1.00587 0.97827 1.21299 0.96819 0.97538 0.98698 1.21443 0.97098 0.96368 0.99458 1.21441 0.94586 1.01040 0.97878 1.21667 0.98324 0.94961 0.99621 1.73588 1.03182 1.19510 1.14656 1.43426 1.02080 1.51690 1.10942 0.69304 0.92702 0.91532 0.91761 0.92593 0.92521 0.87869 0.87606 0.81910 0.75525 0.91001 0.94543 0.79067 0.94535 0.94148 0.90655 0.92279 0.94145 0.90614 0.92184 0.90748 0.93957 0.89679 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 3 C -0.04 -0.49 5.77 29.85 0.17 -0.31 16 4 C 0.04 0.75 6.48 41.40 0.27 1.02 16 5 C -0.20 -5.60 10.73 22.41 0.24 -5.36 16 6 C -0.04 -1.23 7.13 42.46 0.30 -0.93 16 7 C 0.59 23.80 7.82 86.75 0.68 24.48 16 8 O -0.58 -25.96 16.93 -3.95 -0.07 -26.02 16 9 N -0.68 -26.80 5.09 -466.11 -2.37 -29.18 16 10 C 0.12 4.55 4.37 86.38 0.38 4.93 16 11 C 0.19 6.94 0.41 3.61 0.00 6.94 16 12 N -0.71 -32.57 3.40 -303.34 -1.03 -33.60 16 13 C -0.21 -11.04 8.70 84.04 0.73 -10.31 16 14 H 0.06 3.34 6.77 -2.91 -0.02 3.32 16 15 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 16 N -0.96 -57.06 13.07 21.65 0.28 -56.78 16 17 Si 0.95 47.22 29.55 68.60 2.03 49.25 16 18 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 19 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 20 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 21 C -0.11 -3.89 4.52 30.60 0.14 -3.75 16 22 C -0.11 -3.57 5.77 30.59 0.18 -3.39 16 23 C -0.11 -2.95 5.92 30.59 0.18 -2.76 16 24 C -0.11 -3.32 5.75 30.61 0.18 -3.14 16 25 C -0.11 -3.29 4.65 30.61 0.14 -3.14 16 26 N -0.27 -8.60 11.92 -48.18 -0.57 -9.17 16 27 N -0.36 -7.97 6.83 -47.93 -0.33 -8.30 16 28 H 0.46 6.33 8.96 -219.98 -1.97 4.36 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 35 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.41 16.28 7.12 -92.71 -0.66 15.62 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.04 1.60 7.50 -2.39 -0.02 1.58 16 40 H 0.38 18.76 6.63 -92.71 -0.61 18.15 16 41 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 42 H 0.04 1.57 7.23 -2.38 -0.02 1.55 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.04 1.71 7.60 -2.39 -0.02 1.69 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.04 1.54 6.92 -2.39 -0.02 1.52 16 50 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.05 1.72 7.28 -2.39 -0.02 1.70 16 Total: -1.00 -70.68 403.83 0.59 -70.09 By element: Atomic # 1 Polarization: 46.87 SS G_CDS: -2.30 Total: 44.57 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 4.95 Total: -0.85 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -4.02 Total: -137.03 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -70.68 0.59 -70.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115658708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.512 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds