Wall clock time and date at job start Tue Mar 31 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.46970 * 2 1 4 4 C 1.34665 * 126.59245 * 275.03322 * 3 2 1 5 5 N 1.34130 * 108.02291 * 179.74764 * 4 3 2 6 6 C 1.30503 * 109.25329 * 0.37147 * 5 4 3 7 7 C 1.50699 * 125.64773 * 179.88924 * 6 5 4 8 8 C 1.50699 * 109.47190 * 304.69407 * 7 6 5 9 9 O 1.21281 * 120.00382 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46929 * 120.63328 * 0.02562 * 10 8 7 12 12 C 1.53196 * 108.77486 * 233.60825 * 11 10 8 13 13 C 1.53035 * 109.30995 * 305.36045 * 12 11 10 14 14 H 1.09004 * 109.45792 * 181.38956 * 13 12 11 15 15 C 1.53000 * 109.46239 * 301.34363 * 13 12 11 16 16 C 1.53042 * 109.54021 * 61.36728 * 13 12 11 17 17 H 1.09004 * 109.49547 * 58.61806 * 16 13 12 18 18 C 1.52994 * 109.49646 * 178.67720 * 16 13 12 19 19 N 1.46504 * 109.47011 * 184.99712 * 18 16 13 20 20 C 1.36933 * 120.00275 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99952 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00229 * 180.02562 * 20 19 18 23 23 N 1.31609 * 119.99697 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99893 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47089 * 60.00036 * 24 22 20 26 26 H 1.48502 * 109.47162 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47331 * 300.00136 * 24 22 20 28 28 C 1.46924 * 120.63263 * 180.02562 * 10 8 7 29 29 N 1.35040 * 108.70059 * 359.63126 * 6 5 4 30 30 H 0.96997 * 126.40013 * 180.20370 * 29 6 5 31 31 H 1.09007 * 109.47016 * 59.99727 * 1 2 3 32 32 H 1.08995 * 109.47650 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47523 * 300.00578 * 1 2 3 34 34 H 1.08996 * 109.47047 * 240.00011 * 2 1 3 35 35 H 1.09000 * 109.46382 * 119.99695 * 2 1 3 36 36 H 1.07998 * 125.99023 * 0.02562 * 4 3 2 37 37 H 1.09006 * 109.46963 * 184.69983 * 7 6 5 38 38 H 1.08999 * 109.47209 * 64.69689 * 7 6 5 39 39 H 1.08998 * 109.59209 * 113.81639 * 11 10 8 40 40 H 1.09003 * 109.58217 * 353.38921 * 11 10 8 41 41 H 1.09001 * 109.49651 * 65.31212 * 12 11 10 42 42 H 1.09001 * 109.49244 * 185.40784 * 12 11 10 43 43 H 1.09004 * 109.46972 * 60.00711 * 15 13 12 44 44 H 1.09005 * 109.47214 * 179.97438 * 15 13 12 45 45 H 1.08998 * 109.47004 * 300.00321 * 15 13 12 46 46 H 1.08996 * 109.48084 * 305.00156 * 18 16 13 47 47 H 1.09008 * 109.47069 * 65.00760 * 18 16 13 48 48 H 0.96998 * 120.00077 * 0.02562 * 19 18 16 49 49 H 0.97003 * 119.99864 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.58511 * 6.60547 * 28 10 8 51 51 H 1.09005 * 109.70744 * 246.25091 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2093 -1.0771 5 7 2.6643 3.3974 -0.6511 6 6 2.7817 3.3725 0.6484 7 6 3.2633 4.5121 1.5088 8 6 4.6180 4.9659 1.0292 9 8 5.1407 4.4183 0.0817 10 7 5.2482 5.9811 1.6526 11 6 4.6276 6.6549 2.8014 12 6 4.5909 8.1619 2.5283 13 6 6.0033 8.6513 2.2005 14 1 5.9841 9.7278 2.0300 15 6 6.9362 8.3378 3.3719 16 6 6.5105 7.9446 0.9414 17 1 5.8330 8.1480 0.1121 18 6 7.9094 8.4587 0.5957 19 7 8.3457 7.8715 -0.6736 20 6 9.5750 8.1873 -1.1875 21 1 10.2232 8.8691 -0.6569 22 6 9.9882 7.6313 -2.3905 23 7 9.1981 6.8009 -3.0373 24 14 11.6649 8.0628 -3.0918 25 1 12.7222 7.6617 -2.1293 26 1 11.8651 7.3424 -4.3749 27 1 11.7406 9.5269 -3.3286 28 6 6.5689 6.4352 1.1964 29 7 2.3946 2.1582 1.0949 30 1 2.3769 1.8634 2.0188 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.0171 1.9348 -2.1035 37 1 3.3372 4.1796 2.5443 38 1 2.5581 5.3406 1.4426 39 1 5.2137 6.4604 3.6995 40 1 3.6119 6.2834 2.9378 41 1 3.9311 8.3627 1.6842 42 1 4.2211 8.6826 3.4116 43 1 6.9553 7.2614 3.5432 44 1 7.9424 8.6859 3.1384 45 1 6.5757 8.8421 4.2685 46 1 7.8853 9.5446 0.5044 47 1 8.6059 8.1759 1.3852 48 1 7.7638 7.2589 -1.1500 49 1 9.4866 6.4126 -3.8781 50 1 6.8342 5.9189 0.2739 51 1 7.3153 6.2226 1.9618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132901812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:14 Heat of formation + Delta-G solvation = 23.123853 kcal Electronic energy + Delta-G solvation = -29302.370235 eV Core-core repulsion = 25430.470983 eV Total energy + Delta-G solvation = -3871.899252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.19646 -40.20603 -37.96764 -34.87961 -34.41028 -33.46405 -32.52744 -31.90844 -31.30140 -29.72184 -27.78583 -27.15397 -25.29352 -24.59387 -23.53334 -23.07823 -21.26111 -21.11141 -20.86031 -19.45392 -18.09787 -17.57743 -17.11730 -16.78452 -15.76675 -15.49734 -15.17517 -14.90700 -14.77178 -14.65820 -14.44375 -14.17158 -13.72902 -13.58417 -13.49439 -13.35146 -12.99396 -12.92716 -12.67489 -12.58378 -12.38464 -12.22377 -11.88605 -11.86826 -11.59064 -11.50998 -11.17809 -11.02096 -10.84894 -10.72614 -10.55730 -10.24815 -10.10986 -10.00274 -9.89805 -9.82096 -9.57423 -9.47466 -8.76685 -8.35590 -8.26967 -6.80382 -5.63133 -2.93136 1.89036 2.75460 2.85837 3.09594 3.35964 3.51419 3.55047 3.57243 4.20603 4.54388 4.57513 4.65668 4.67829 4.73629 4.75633 4.88493 4.96754 4.97741 5.14887 5.23713 5.25824 5.30173 5.31573 5.35120 5.46917 5.53410 5.61375 5.67083 5.69463 5.70872 5.74153 5.82844 5.86792 5.95339 6.01056 6.06144 6.18082 6.23915 6.37801 6.39768 6.43541 6.66059 6.72597 6.75003 6.85681 6.97200 7.24772 7.59376 7.79141 8.13528 8.42516 8.54247 9.64899 10.23861 10.57875 11.58899 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010935 B = 0.002861 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.018781 B = 9782.873785 C =12005.105212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.027 4.027 4 C -0.018 4.018 5 N -0.453 5.453 6 C 0.218 3.782 7 C -0.052 4.052 8 C 0.513 3.487 9 O -0.502 6.502 10 N -0.613 5.613 11 C 0.105 3.895 12 C -0.130 4.130 13 C -0.085 4.085 14 H 0.073 0.927 15 C -0.153 4.153 16 C -0.102 4.102 17 H 0.074 0.926 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.243 4.243 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.123 3.877 29 N -0.564 5.564 30 H 0.413 0.587 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.168 0.832 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.022 0.978 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.102 0.898 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.960 -8.255 17.731 27.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.167 4.167 5 N -0.171 5.171 6 C -0.046 4.046 7 C -0.093 4.093 8 C 0.298 3.702 9 O -0.374 6.374 10 N -0.348 5.348 11 C -0.018 4.018 12 C -0.168 4.168 13 C -0.104 4.104 14 H 0.091 0.909 15 C -0.210 4.210 16 C -0.122 4.122 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.374 4.374 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.001 3.999 29 N -0.168 5.168 30 H 0.251 0.749 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.039 0.961 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.120 0.880 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.327 -7.828 16.596 26.650 hybrid contribution 0.568 -0.684 0.424 0.985 sum -18.759 -8.512 17.020 26.721 Atomic orbital electron populations 1.21777 0.94536 1.01781 1.02380 1.19964 0.95891 0.89186 1.03392 1.21192 1.09418 0.96312 0.87323 1.22138 1.05529 0.90374 0.98639 1.70286 1.15969 1.23126 1.07710 1.22258 1.04347 0.86783 0.91214 1.19959 0.96499 0.95195 0.97680 1.20044 0.86357 0.80430 0.83388 1.90846 1.66113 1.54475 1.26000 1.48120 1.20405 1.34090 1.32206 1.21761 0.97955 0.93173 0.88898 1.21948 0.97863 0.94992 1.01984 1.21066 0.93939 1.00110 0.95256 0.90881 1.21987 1.00197 1.01624 0.97152 1.21685 0.99102 0.94389 0.97015 0.90753 1.20673 0.90956 0.95614 0.89474 1.42422 1.18720 1.54971 1.21649 1.19141 0.93234 1.22207 1.02814 0.91360 1.24762 0.98350 0.99887 0.97921 1.69669 1.36458 1.34166 1.17307 0.86298 0.84163 0.77591 0.78278 1.21361 1.21728 1.21359 1.21695 0.81805 0.94645 1.01737 1.43053 1.51839 1.12440 1.09481 0.74940 0.91998 0.92140 0.93009 0.89394 0.91423 0.81516 0.87970 0.86551 0.91143 0.90443 0.91371 0.90947 0.92472 0.91810 0.93221 0.96269 0.96064 0.78039 0.93431 0.87976 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.05 -0.32 6.49 -27.88 -0.18 -0.50 16 3 C -0.03 -0.29 6.49 -81.60 -0.53 -0.82 16 4 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 5 N -0.45 -7.60 10.60 -10.82 -0.11 -7.71 16 6 C 0.22 2.89 6.95 -155.42 -1.08 1.81 16 7 C -0.05 -0.54 4.67 -29.04 -0.14 -0.68 16 8 C 0.51 7.99 7.69 -10.99 -0.08 7.90 16 9 O -0.50 -10.79 14.97 5.56 0.08 -10.71 16 10 N -0.61 -8.46 2.97 -172.77 -0.51 -8.97 16 11 C 0.11 0.96 5.87 -3.71 -0.02 0.94 16 12 C -0.13 -1.23 5.63 -26.61 -0.15 -1.38 16 13 C -0.08 -1.03 2.71 -90.58 -0.25 -1.28 16 14 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 16 C -0.10 -1.70 2.15 -90.51 -0.19 -1.90 16 17 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 18 C 0.16 3.29 5.19 -4.04 -0.02 3.27 16 19 N -0.73 -19.44 5.38 -59.91 -0.32 -19.76 16 20 C -0.24 -7.07 9.99 -15.06 -0.15 -7.22 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.76 13.06 55.49 0.72 -29.03 16 24 Si 0.91 23.32 29.55 -169.99 -5.02 18.29 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.12 2.10 5.05 -3.72 -0.02 2.08 16 29 N -0.56 -5.66 6.15 -6.54 -0.04 -5.70 16 30 H 0.41 2.57 8.96 -40.82 -0.37 2.21 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.10 0.65 7.94 -51.93 -0.41 0.24 16 38 H 0.12 1.00 7.69 -51.93 -0.40 0.60 16 39 H 0.07 0.57 6.69 -51.93 -0.35 0.22 16 40 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.63 4.98 -51.93 -0.26 0.37 16 44 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.02 0.43 6.73 -51.92 -0.35 0.08 16 48 H 0.39 11.04 6.90 -40.82 -0.28 10.76 16 49 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 50 H 0.10 2.25 6.22 -51.93 -0.32 1.93 16 51 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -38.86 397.27 -10.02 -48.88 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.35 Total: 9.32 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.45 Total: -0.60 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.27 Total: -71.17 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.86 -10.02 -48.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132901812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.006 kcal (2) G-P(sol) polarization free energy of solvation -38.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds