Wall clock time and date at job start Tue Mar 31 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.46970 * 2 1 4 4 C 1.34665 * 126.59245 * 275.03322 * 3 2 1 5 5 N 1.34130 * 108.02291 * 179.74764 * 4 3 2 6 6 C 1.30503 * 109.25329 * 0.37147 * 5 4 3 7 7 C 1.50699 * 125.64773 * 179.88924 * 6 5 4 8 8 C 1.50699 * 109.47190 * 304.69407 * 7 6 5 9 9 O 1.21281 * 120.00382 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46929 * 120.63328 * 0.02562 * 10 8 7 12 12 C 1.53196 * 108.77486 * 233.60825 * 11 10 8 13 13 C 1.53035 * 109.30995 * 305.36045 * 12 11 10 14 14 H 1.09004 * 109.45792 * 181.38956 * 13 12 11 15 15 C 1.53000 * 109.46239 * 301.34363 * 13 12 11 16 16 C 1.53042 * 109.54021 * 61.36728 * 13 12 11 17 17 H 1.09004 * 109.49547 * 58.61806 * 16 13 12 18 18 C 1.52994 * 109.49646 * 178.67720 * 16 13 12 19 19 N 1.46504 * 109.47011 * 184.99712 * 18 16 13 20 20 C 1.36933 * 120.00275 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99952 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00229 * 180.02562 * 20 19 18 23 23 N 1.31609 * 119.99697 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99893 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47089 * 60.00036 * 24 22 20 26 26 H 1.48502 * 109.47162 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47331 * 300.00136 * 24 22 20 28 28 C 1.46924 * 120.63263 * 180.02562 * 10 8 7 29 29 N 1.35040 * 108.70059 * 359.63126 * 6 5 4 30 30 H 0.96997 * 126.40013 * 180.20370 * 29 6 5 31 31 H 1.09007 * 109.47016 * 59.99727 * 1 2 3 32 32 H 1.08995 * 109.47650 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47523 * 300.00578 * 1 2 3 34 34 H 1.08996 * 109.47047 * 240.00011 * 2 1 3 35 35 H 1.09000 * 109.46382 * 119.99695 * 2 1 3 36 36 H 1.07998 * 125.99023 * 0.02562 * 4 3 2 37 37 H 1.09006 * 109.46963 * 184.69983 * 7 6 5 38 38 H 1.08999 * 109.47209 * 64.69689 * 7 6 5 39 39 H 1.08998 * 109.59209 * 113.81639 * 11 10 8 40 40 H 1.09003 * 109.58217 * 353.38921 * 11 10 8 41 41 H 1.09001 * 109.49651 * 65.31212 * 12 11 10 42 42 H 1.09001 * 109.49244 * 185.40784 * 12 11 10 43 43 H 1.09004 * 109.46972 * 60.00711 * 15 13 12 44 44 H 1.09005 * 109.47214 * 179.97438 * 15 13 12 45 45 H 1.08998 * 109.47004 * 300.00321 * 15 13 12 46 46 H 1.08996 * 109.48084 * 305.00156 * 18 16 13 47 47 H 1.09008 * 109.47069 * 65.00760 * 18 16 13 48 48 H 0.96998 * 120.00077 * 0.02562 * 19 18 16 49 49 H 0.97003 * 119.99864 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.58511 * 6.60547 * 28 10 8 51 51 H 1.09005 * 109.70744 * 246.25091 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2093 -1.0771 5 7 2.6643 3.3974 -0.6511 6 6 2.7817 3.3725 0.6484 7 6 3.2633 4.5121 1.5088 8 6 4.6180 4.9659 1.0292 9 8 5.1407 4.4183 0.0817 10 7 5.2482 5.9811 1.6526 11 6 4.6276 6.6549 2.8014 12 6 4.5909 8.1619 2.5283 13 6 6.0033 8.6513 2.2005 14 1 5.9841 9.7278 2.0300 15 6 6.9362 8.3378 3.3719 16 6 6.5105 7.9446 0.9414 17 1 5.8330 8.1480 0.1121 18 6 7.9094 8.4587 0.5957 19 7 8.3457 7.8715 -0.6736 20 6 9.5750 8.1873 -1.1875 21 1 10.2232 8.8691 -0.6569 22 6 9.9882 7.6313 -2.3905 23 7 9.1981 6.8009 -3.0373 24 14 11.6649 8.0628 -3.0918 25 1 12.7222 7.6617 -2.1293 26 1 11.8651 7.3424 -4.3749 27 1 11.7406 9.5269 -3.3286 28 6 6.5689 6.4352 1.1964 29 7 2.3946 2.1582 1.0949 30 1 2.3769 1.8634 2.0188 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.0171 1.9348 -2.1035 37 1 3.3372 4.1796 2.5443 38 1 2.5581 5.3406 1.4426 39 1 5.2137 6.4604 3.6995 40 1 3.6119 6.2834 2.9378 41 1 3.9311 8.3627 1.6842 42 1 4.2211 8.6826 3.4116 43 1 6.9553 7.2614 3.5432 44 1 7.9424 8.6859 3.1384 45 1 6.5757 8.8421 4.2685 46 1 7.8853 9.5446 0.5044 47 1 8.6059 8.1759 1.3852 48 1 7.7638 7.2589 -1.1500 49 1 9.4866 6.4126 -3.8781 50 1 6.8342 5.9189 0.2739 51 1 7.3153 6.2226 1.9618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132901812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:09 Heat of formation + Delta-G solvation = -5.160407 kcal Electronic energy + Delta-G solvation = -29303.596733 eV Core-core repulsion = 25430.470983 eV Total energy + Delta-G solvation = -3873.125749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -43.10760 -41.35549 -39.22140 -36.61817 -35.11485 -34.87983 -33.49331 -33.45598 -32.36140 -31.28430 -28.74756 -28.25396 -26.85972 -25.63318 -24.87735 -24.22712 -22.54120 -22.22611 -21.77068 -20.60643 -19.36059 -18.90554 -18.49050 -17.98250 -16.92841 -16.76137 -16.56861 -16.17113 -15.75327 -15.67755 -15.46984 -15.30038 -15.15449 -14.85024 -14.55650 -14.46213 -14.31536 -14.13850 -13.89451 -13.75072 -13.24726 -13.12192 -13.03164 -12.86010 -12.82673 -12.58929 -12.44376 -12.42358 -12.16500 -12.02191 -11.98062 -11.90605 -11.68215 -11.32354 -11.18592 -10.97080 -10.92653 -10.81437 -10.72975 -9.51531 -9.18458 -9.01844 -7.94931 -5.26123 1.00290 1.42715 1.47926 1.54301 1.67308 1.85154 2.18384 2.36089 2.54417 3.31944 3.37240 3.63101 3.80940 3.85836 3.89809 3.90968 4.04364 4.14177 4.14809 4.23671 4.32936 4.36190 4.42435 4.45257 4.54339 4.58162 4.61657 4.71123 4.76089 4.77200 4.81599 4.87754 4.95019 4.95546 5.04387 5.06725 5.12710 5.23581 5.28401 5.34225 5.35287 5.40543 5.44572 5.47558 5.59543 5.65064 5.80159 6.24728 6.45785 6.57963 7.21203 7.28450 7.29692 8.07270 8.29304 9.28362 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010935 B = 0.002861 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.018781 B = 9782.873785 C =12005.105212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.005 4.005 4 C -0.066 4.066 5 N -0.516 5.516 6 C 0.203 3.797 7 C -0.040 4.040 8 C 0.503 3.497 9 O -0.578 6.578 10 N -0.607 5.607 11 C 0.096 3.904 12 C -0.125 4.125 13 C -0.080 4.080 14 H 0.076 0.924 15 C -0.148 4.148 16 C -0.090 4.090 17 H 0.044 0.956 18 C 0.159 3.841 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.080 0.920 22 C -0.083 4.083 23 N -0.974 5.974 24 Si 0.979 3.021 25 H -0.274 1.274 26 H -0.298 1.298 27 H -0.274 1.274 28 C 0.133 3.867 29 N -0.548 5.548 30 H 0.434 0.566 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.022 0.978 47 H 0.031 0.969 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.040 0.960 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.408 -7.959 22.129 31.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.122 4.122 4 C -0.213 4.213 5 N -0.235 5.235 6 C -0.062 4.062 7 C -0.080 4.080 8 C 0.291 3.709 9 O -0.456 6.456 10 N -0.341 5.341 11 C -0.024 4.024 12 C -0.163 4.163 13 C -0.099 4.099 14 H 0.094 0.906 15 C -0.205 4.205 16 C -0.110 4.110 17 H 0.063 0.937 18 C 0.032 3.968 19 N -0.392 5.392 20 C -0.378 4.378 21 H 0.098 0.902 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.808 3.192 25 H -0.200 1.200 26 H -0.224 1.224 27 H -0.199 1.199 28 C 0.010 3.990 29 N -0.154 5.154 30 H 0.275 0.725 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.184 0.816 37 H 0.174 0.826 38 H 0.160 0.840 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.040 0.960 47 H 0.049 0.951 48 H 0.200 0.800 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.799 -7.477 21.113 30.565 hybrid contribution 1.001 -0.755 -0.890 1.537 sum -19.798 -8.232 20.223 29.474 Atomic orbital electron populations 1.21735 0.93376 1.02888 1.01980 1.20120 0.96723 0.86760 1.04621 1.21653 1.06765 0.97216 0.86519 1.22381 1.08031 0.90952 0.99960 1.70175 1.17861 1.25187 1.10275 1.22633 1.04399 0.88371 0.90753 1.20098 0.93093 0.95305 0.99550 1.21040 0.87783 0.79811 0.82306 1.90822 1.68268 1.57071 1.29431 1.48206 1.18996 1.33771 1.33103 1.22247 1.00302 0.92536 0.87335 1.21963 0.95374 0.95525 1.03404 1.21072 0.96161 0.99677 0.93012 0.90576 1.21953 0.98856 1.02014 0.97679 1.21543 0.96128 0.94580 0.98753 0.93721 1.20885 0.93490 0.95317 0.87061 1.42709 1.17997 1.54945 1.23513 1.19651 0.94101 1.21331 1.02765 0.90191 1.25722 1.02645 1.00371 0.98704 1.69888 1.38767 1.36129 1.17645 0.85127 0.79340 0.77689 0.77091 1.20012 1.22398 1.19949 1.21260 0.84304 0.94251 0.99204 1.42959 1.50659 1.11327 1.10420 0.72461 0.93115 0.90256 0.92726 0.89046 0.89296 0.81623 0.82595 0.83955 0.88801 0.86246 0.92390 0.86780 0.92369 0.93731 0.89883 0.96025 0.95146 0.80003 0.94180 0.94177 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 71.98 0.71 -0.69 16 2 C -0.04 -0.54 6.49 29.85 0.19 -0.34 16 3 C 0.00 -0.10 6.49 40.95 0.27 0.17 16 4 C -0.07 -1.93 11.79 83.52 0.98 -0.95 16 5 N -0.52 -18.27 10.60 -188.14 -1.99 -20.27 16 6 C 0.20 5.29 6.95 138.13 0.96 6.25 16 7 C -0.04 -0.74 4.67 29.10 0.14 -0.60 16 8 C 0.50 15.83 7.69 87.66 0.67 16.50 16 9 O -0.58 -26.86 14.97 -3.03 -0.05 -26.90 16 10 N -0.61 -16.35 2.97 -818.91 -2.43 -18.78 16 11 C 0.10 1.34 5.87 86.36 0.51 1.85 16 12 C -0.12 -1.87 5.63 30.67 0.17 -1.70 16 13 C -0.08 -1.78 2.71 -10.77 -0.03 -1.81 16 14 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 15 C -0.15 -2.80 8.11 71.98 0.58 -2.22 16 16 C -0.09 -3.10 2.15 -10.72 -0.02 -3.12 16 17 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 18 C 0.16 6.72 5.19 86.38 0.45 7.17 16 19 N -0.75 -41.93 5.38 -343.44 -1.85 -43.77 16 20 C -0.25 -14.81 9.99 84.04 0.84 -13.97 16 21 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 22 C -0.08 -5.13 5.50 84.86 0.47 -4.67 16 23 N -0.97 -65.77 13.06 21.65 0.28 -65.48 16 24 Si 0.98 49.23 29.55 68.60 2.03 51.25 16 25 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 27 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 28 C 0.13 4.79 5.05 86.36 0.44 5.22 16 29 N -0.55 -10.07 6.15 -174.61 -1.07 -11.14 16 30 H 0.43 3.99 8.96 -92.71 -0.83 3.16 16 31 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.17 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.16 1.16 7.94 -2.38 -0.02 1.14 16 38 H 0.14 1.94 7.69 -2.39 -0.02 1.92 16 39 H 0.09 0.98 6.69 -2.39 -0.02 0.96 16 40 H 0.12 0.74 5.93 -2.39 -0.01 0.72 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.09 4.98 -2.39 -0.01 1.08 16 44 H 0.04 1.02 6.57 -2.38 -0.02 1.00 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.03 1.25 6.73 -2.38 -0.02 1.23 16 48 H 0.37 22.88 6.90 -92.71 -0.64 22.24 16 49 H 0.25 16.36 8.31 -92.71 -0.77 15.59 16 50 H 0.04 1.95 6.22 -2.39 -0.01 1.94 16 51 H 0.07 2.44 6.70 -2.38 -0.02 2.43 16 Total: -1.00 -95.87 397.27 1.72 -94.15 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -0.52 Total: 33.86 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 7.33 Total: 7.09 kcal Atomic # 7 Polarization: -152.38 SS G_CDS: -7.07 Total: -159.44 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.25 kcal Total: -95.87 1.72 -94.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132901812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.985 kcal (2) G-P(sol) polarization free energy of solvation -95.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds