Wall clock time and date at job start Tue Mar 31 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47026 * 2 1 4 4 C 1.34668 * 126.59258 * 275.04076 * 3 2 1 5 5 N 1.34124 * 108.02065 * 179.74886 * 4 3 2 6 6 C 1.30506 * 109.25583 * 0.36762 * 5 4 3 7 7 C 1.50703 * 125.64902 * 179.89336 * 6 5 4 8 8 C 1.50696 * 109.47122 * 304.69517 * 7 6 5 9 9 O 1.21286 * 120.00306 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.47207 * 120.81118 * 0.14238 * 10 8 7 12 12 C 1.53195 * 108.85456 * 126.33789 * 11 10 8 13 13 C 1.53038 * 109.31078 * 54.64814 * 12 11 10 14 14 H 1.09003 * 109.46001 * 178.60988 * 13 12 11 15 15 C 1.53007 * 109.44952 * 58.65418 * 13 12 11 16 16 C 1.53035 * 109.54175 * 298.63655 * 13 12 11 17 17 H 1.08997 * 109.52301 * 301.39793 * 16 13 12 18 18 C 1.53005 * 109.49699 * 181.31740 * 16 13 12 19 19 N 1.46504 * 109.46902 * 175.16257 * 18 16 13 20 20 C 1.36939 * 119.99891 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00036 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99748 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00464 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99881 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46872 * 60.00088 * 24 22 20 26 26 H 1.48502 * 109.47316 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46968 * 299.99865 * 24 22 20 28 28 C 1.46926 * 120.63336 * 180.02562 * 10 8 7 29 29 N 1.35034 * 108.69883 * 359.63468 * 6 5 4 30 30 H 0.97003 * 126.39777 * 180.21073 * 29 6 5 31 31 H 1.09000 * 109.47031 * 59.99714 * 1 2 3 32 32 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46620 * 300.00347 * 1 2 3 34 34 H 1.08999 * 109.47133 * 240.00214 * 2 1 3 35 35 H 1.09000 * 109.47031 * 120.00286 * 2 1 3 36 36 H 1.08002 * 125.98832 * 359.92631 * 4 3 2 37 37 H 1.08992 * 109.47050 * 184.69283 * 7 6 5 38 38 H 1.09000 * 109.46948 * 64.68930 * 7 6 5 39 39 H 1.08996 * 109.53610 * 6.53286 * 11 10 8 40 40 H 1.08997 * 109.56315 * 246.15731 * 11 10 8 41 41 H 1.09002 * 109.49713 * 294.70061 * 12 11 10 42 42 H 1.08996 * 109.49824 * 174.60179 * 12 11 10 43 43 H 1.09003 * 109.46630 * 299.93659 * 15 13 12 44 44 H 1.08997 * 109.47103 * 59.93254 * 15 13 12 45 45 H 1.08996 * 109.46938 * 179.97438 * 15 13 12 46 46 H 1.09000 * 109.47319 * 295.15932 * 18 16 13 47 47 H 1.08995 * 109.47422 * 55.16582 * 18 16 13 48 48 H 0.97004 * 119.99900 * 359.97438 * 19 18 16 49 49 H 0.96993 * 120.00300 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58861 * 113.82042 * 28 10 8 51 51 H 1.08996 * 109.58519 * 353.53933 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2104 2.2094 -1.0771 5 7 2.6643 3.3974 -0.6511 6 6 2.7818 3.3724 0.6485 7 6 3.2635 4.5120 1.5089 8 6 4.6180 4.9659 1.0292 9 8 5.1411 4.4177 0.0822 10 7 5.2488 5.9805 1.6532 11 6 4.6324 6.6558 2.8069 12 6 5.6211 6.6384 3.9770 13 6 6.9488 7.2521 3.5268 14 1 7.6461 7.2635 4.3645 15 6 6.7102 8.6839 3.0428 16 6 7.5367 6.4194 2.3853 17 1 7.6841 5.3931 2.7216 18 6 8.8798 7.0147 1.9581 19 7 9.4962 6.1530 0.9463 20 6 10.7123 6.4860 0.4121 21 1 11.2168 7.3841 0.7364 22 6 11.2965 5.6692 -0.5462 23 7 10.6814 4.5749 -0.9418 24 14 12.9552 6.1239 -1.2754 25 1 13.9701 6.1901 -0.1935 26 1 13.3572 5.0967 -2.2697 27 1 12.8564 7.4465 -1.9433 28 6 6.5695 6.4346 1.1969 29 7 2.3948 2.1582 1.0949 30 1 2.3770 1.8634 2.0189 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0183 1.9343 -2.1037 37 1 3.3373 4.1796 2.5442 38 1 2.5583 5.3405 1.4427 39 1 3.7202 6.1314 3.0915 40 1 4.3965 7.6867 2.5431 41 1 5.7861 5.6101 4.2986 42 1 5.2145 7.2184 4.8054 43 1 6.0132 8.6727 2.2048 44 1 6.2915 9.2771 3.8557 45 1 7.6557 9.1214 2.7225 46 1 8.7202 8.0088 1.5403 47 1 9.5377 7.0859 2.8242 48 1 9.0432 5.3461 0.6553 49 1 11.0899 4.0040 -1.6112 50 1 6.4913 7.4476 0.8020 51 1 6.9367 5.7663 0.4181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132901813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:25 Heat of formation + Delta-G solvation = 22.537722 kcal Electronic energy + Delta-G solvation = -29316.123313 eV Core-core repulsion = 25444.198645 eV Total energy + Delta-G solvation = -3871.924668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -42.19397 -40.19682 -37.97472 -34.88600 -34.40227 -33.46743 -32.52523 -31.91905 -31.30488 -29.73632 -27.79149 -27.15962 -25.30073 -24.60516 -23.52771 -23.09665 -21.26020 -21.12445 -20.85720 -19.48343 -18.05579 -17.57278 -17.17916 -16.77187 -15.76718 -15.47889 -15.19417 -14.91748 -14.78264 -14.67405 -14.43528 -14.17671 -13.72998 -13.58024 -13.49137 -13.41252 -12.96596 -12.91768 -12.71981 -12.57299 -12.41484 -12.19605 -11.90277 -11.85978 -11.59861 -11.50026 -11.19123 -11.04670 -10.86334 -10.73778 -10.57123 -10.26366 -10.13431 -10.00661 -9.91631 -9.84045 -9.58541 -9.48267 -8.78422 -8.35571 -8.26955 -6.82441 -5.65329 -2.95260 1.89627 2.78371 2.83657 3.10304 3.34533 3.50357 3.54120 3.56098 4.19886 4.55216 4.57159 4.66023 4.67335 4.71634 4.77341 4.86510 4.95935 4.97743 5.13699 5.21853 5.26356 5.29730 5.31726 5.34983 5.46577 5.54250 5.60744 5.65915 5.68846 5.69540 5.72922 5.83448 5.85263 5.92696 5.99410 6.04605 6.18744 6.22068 6.35686 6.38789 6.42134 6.64826 6.71945 6.74233 6.83276 6.94935 7.25215 7.59356 7.77547 8.12365 8.42660 8.52197 9.62910 10.21486 10.55424 11.56813 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.002901 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.168624 B = 9649.828842 C =11843.327082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.026 4.026 4 C -0.019 4.019 5 N -0.455 5.455 6 C 0.219 3.781 7 C -0.052 4.052 8 C 0.513 3.487 9 O -0.502 6.502 10 N -0.614 5.614 11 C 0.105 3.895 12 C -0.129 4.129 13 C -0.085 4.085 14 H 0.072 0.928 15 C -0.153 4.153 16 C -0.102 4.102 17 H 0.072 0.928 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.122 3.878 29 N -0.563 5.563 30 H 0.414 0.586 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.167 0.833 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.019 0.981 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.067 0.933 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.917 -2.259 12.164 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.168 4.168 5 N -0.174 5.174 6 C -0.045 4.045 7 C -0.093 4.093 8 C 0.298 3.702 9 O -0.374 6.374 10 N -0.349 5.349 11 C -0.018 4.018 12 C -0.167 4.167 13 C -0.104 4.104 14 H 0.091 0.909 15 C -0.210 4.210 16 C -0.121 4.121 17 H 0.090 0.910 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.374 4.374 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.001 3.999 29 N -0.167 5.167 30 H 0.251 0.749 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.085 0.915 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.302 -1.807 11.006 25.833 hybrid contribution 0.683 -0.858 0.574 1.238 sum -22.619 -2.666 11.580 25.550 Atomic orbital electron populations 1.21775 0.94544 1.01788 1.02333 1.19972 0.95867 0.89192 1.03474 1.21197 1.09299 0.96299 0.87313 1.22115 1.05660 0.90409 0.98604 1.70251 1.16161 1.23213 1.07736 1.22242 1.04273 0.86817 0.91194 1.19957 0.96425 0.95191 0.97765 1.20034 0.86444 0.80082 0.83614 1.90849 1.66090 1.54104 1.26394 1.48181 1.20200 1.34611 1.31885 1.21806 0.95759 0.98054 0.86158 1.21944 0.96038 1.01585 0.97146 1.21067 0.96022 0.95190 0.98094 0.90925 1.21991 1.02460 0.95706 1.00862 1.21689 0.95748 1.00002 0.94682 0.90979 1.20677 0.90016 0.93839 0.92214 1.42418 1.21810 1.27372 1.46159 1.19144 0.95471 1.05862 1.16876 0.91325 1.24760 0.98847 0.97367 0.99941 1.69666 1.38957 1.14714 1.34383 0.86290 0.84061 0.77266 0.78675 1.21377 1.21727 1.21294 1.21710 0.80139 1.00705 0.97396 1.43051 1.51694 1.12424 1.09540 0.74872 0.92039 0.92128 0.93010 0.89374 0.91355 0.81541 0.87902 0.86626 0.90478 0.90958 0.91615 0.90896 0.92350 0.93191 0.91788 0.95957 0.96285 0.78104 0.93445 0.91461 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 2 C -0.05 -0.34 6.49 -27.88 -0.18 -0.52 16 3 C -0.03 -0.28 6.49 -81.60 -0.53 -0.81 16 4 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 5 N -0.46 -7.50 10.60 -10.82 -0.11 -7.62 16 6 C 0.22 2.91 6.95 -155.42 -1.08 1.83 16 7 C -0.05 -0.55 4.68 -29.04 -0.14 -0.68 16 8 C 0.51 8.01 7.69 -10.99 -0.08 7.93 16 9 O -0.50 -10.81 14.97 5.55 0.08 -10.73 16 10 N -0.61 -8.47 2.98 -172.52 -0.51 -8.99 16 11 C 0.11 0.96 5.88 -3.56 -0.02 0.94 16 12 C -0.13 -1.18 5.63 -26.61 -0.15 -1.33 16 13 C -0.08 -1.01 2.71 -90.58 -0.25 -1.26 16 14 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 16 C -0.10 -1.66 2.15 -90.48 -0.19 -1.86 16 17 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 18 C 0.16 3.26 5.19 -4.04 -0.02 3.24 16 19 N -0.73 -19.30 5.38 -59.91 -0.32 -19.62 16 20 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.62 13.06 55.49 0.72 -28.90 16 24 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.12 2.09 5.04 -3.69 -0.02 2.07 16 29 N -0.56 -5.80 6.15 -6.54 -0.04 -5.84 16 30 H 0.41 2.75 8.96 -40.82 -0.37 2.39 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.10 0.70 7.69 -51.93 -0.40 0.30 16 38 H 0.12 0.95 7.96 -51.93 -0.41 0.54 16 39 H 0.08 0.47 5.97 -51.93 -0.31 0.16 16 40 H 0.07 0.61 6.69 -51.93 -0.35 0.26 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.65 4.98 -51.93 -0.26 0.40 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 46 H 0.02 0.45 6.72 -51.93 -0.35 0.11 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.38 10.92 6.89 -40.82 -0.28 10.64 16 49 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 50 H 0.07 1.13 6.69 -51.93 -0.35 0.78 16 51 H 0.10 2.25 6.20 -51.93 -0.32 1.93 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -38.62 397.31 -10.02 -48.65 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -8.35 Total: 9.32 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.45 Total: -0.48 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.27 Total: -70.96 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.62 -10.02 -48.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132901813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.183 kcal (2) G-P(sol) polarization free energy of solvation -38.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.24 seconds