Wall clock time and date at job start Tue Mar 31 2020 18:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47026 * 2 1 4 4 C 1.34668 * 126.59258 * 275.04076 * 3 2 1 5 5 N 1.34124 * 108.02065 * 179.74886 * 4 3 2 6 6 C 1.30506 * 109.25583 * 0.36762 * 5 4 3 7 7 C 1.50703 * 125.64902 * 179.89336 * 6 5 4 8 8 C 1.50696 * 109.47122 * 304.69517 * 7 6 5 9 9 O 1.21286 * 120.00306 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.47207 * 120.81118 * 0.14238 * 10 8 7 12 12 C 1.53195 * 108.85456 * 126.33789 * 11 10 8 13 13 C 1.53038 * 109.31078 * 54.64814 * 12 11 10 14 14 H 1.09003 * 109.46001 * 178.60988 * 13 12 11 15 15 C 1.53007 * 109.44952 * 58.65418 * 13 12 11 16 16 C 1.53035 * 109.54175 * 298.63655 * 13 12 11 17 17 H 1.08997 * 109.52301 * 301.39793 * 16 13 12 18 18 C 1.53005 * 109.49699 * 181.31740 * 16 13 12 19 19 N 1.46504 * 109.46902 * 175.16257 * 18 16 13 20 20 C 1.36939 * 119.99891 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00036 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99748 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00464 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99881 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46872 * 60.00088 * 24 22 20 26 26 H 1.48502 * 109.47316 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46968 * 299.99865 * 24 22 20 28 28 C 1.46926 * 120.63336 * 180.02562 * 10 8 7 29 29 N 1.35034 * 108.69883 * 359.63468 * 6 5 4 30 30 H 0.97003 * 126.39777 * 180.21073 * 29 6 5 31 31 H 1.09000 * 109.47031 * 59.99714 * 1 2 3 32 32 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46620 * 300.00347 * 1 2 3 34 34 H 1.08999 * 109.47133 * 240.00214 * 2 1 3 35 35 H 1.09000 * 109.47031 * 120.00286 * 2 1 3 36 36 H 1.08002 * 125.98832 * 359.92631 * 4 3 2 37 37 H 1.08992 * 109.47050 * 184.69283 * 7 6 5 38 38 H 1.09000 * 109.46948 * 64.68930 * 7 6 5 39 39 H 1.08996 * 109.53610 * 6.53286 * 11 10 8 40 40 H 1.08997 * 109.56315 * 246.15731 * 11 10 8 41 41 H 1.09002 * 109.49713 * 294.70061 * 12 11 10 42 42 H 1.08996 * 109.49824 * 174.60179 * 12 11 10 43 43 H 1.09003 * 109.46630 * 299.93659 * 15 13 12 44 44 H 1.08997 * 109.47103 * 59.93254 * 15 13 12 45 45 H 1.08996 * 109.46938 * 179.97438 * 15 13 12 46 46 H 1.09000 * 109.47319 * 295.15932 * 18 16 13 47 47 H 1.08995 * 109.47422 * 55.16582 * 18 16 13 48 48 H 0.97004 * 119.99900 * 359.97438 * 19 18 16 49 49 H 0.96993 * 120.00300 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58861 * 113.82042 * 28 10 8 51 51 H 1.08996 * 109.58519 * 353.53933 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2104 2.2094 -1.0771 5 7 2.6643 3.3974 -0.6511 6 6 2.7818 3.3724 0.6485 7 6 3.2635 4.5120 1.5089 8 6 4.6180 4.9659 1.0292 9 8 5.1411 4.4177 0.0822 10 7 5.2488 5.9805 1.6532 11 6 4.6324 6.6558 2.8069 12 6 5.6211 6.6384 3.9770 13 6 6.9488 7.2521 3.5268 14 1 7.6461 7.2635 4.3645 15 6 6.7102 8.6839 3.0428 16 6 7.5367 6.4194 2.3853 17 1 7.6841 5.3931 2.7216 18 6 8.8798 7.0147 1.9581 19 7 9.4962 6.1530 0.9463 20 6 10.7123 6.4860 0.4121 21 1 11.2168 7.3841 0.7364 22 6 11.2965 5.6692 -0.5462 23 7 10.6814 4.5749 -0.9418 24 14 12.9552 6.1239 -1.2754 25 1 13.9701 6.1901 -0.1935 26 1 13.3572 5.0967 -2.2697 27 1 12.8564 7.4465 -1.9433 28 6 6.5695 6.4346 1.1969 29 7 2.3948 2.1582 1.0949 30 1 2.3770 1.8634 2.0189 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0183 1.9343 -2.1037 37 1 3.3373 4.1796 2.5442 38 1 2.5583 5.3405 1.4427 39 1 3.7202 6.1314 3.0915 40 1 4.3965 7.6867 2.5431 41 1 5.7861 5.6101 4.2986 42 1 5.2145 7.2184 4.8054 43 1 6.0132 8.6727 2.2048 44 1 6.2915 9.2771 3.8557 45 1 7.6557 9.1214 2.7225 46 1 8.7202 8.0088 1.5403 47 1 9.5377 7.0859 2.8242 48 1 9.0432 5.3461 0.6553 49 1 11.0899 4.0040 -1.6112 50 1 6.4913 7.4476 0.8020 51 1 6.9367 5.7663 0.4181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132901813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:19 Heat of formation + Delta-G solvation = -5.362545 kcal Electronic energy + Delta-G solvation = -29317.333160 eV Core-core repulsion = 25444.198645 eV Total energy + Delta-G solvation = -3873.134515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.10498 -41.34182 -39.22040 -36.61571 -35.11368 -34.87057 -33.49402 -33.45297 -32.36082 -31.28475 -28.75212 -28.25380 -26.85875 -25.64072 -24.87784 -24.22687 -22.53800 -22.22120 -21.76795 -20.63051 -19.34118 -18.88056 -18.49250 -18.01839 -16.92460 -16.76437 -16.50052 -16.24235 -15.73419 -15.67637 -15.49646 -15.25878 -15.18382 -14.85991 -14.53964 -14.45075 -14.34770 -14.12846 -13.88455 -13.75715 -13.27012 -13.09276 -13.04382 -12.86182 -12.83082 -12.59687 -12.44624 -12.42459 -12.16803 -12.02499 -11.98262 -11.91245 -11.68265 -11.32421 -11.18704 -10.97288 -10.93043 -10.82608 -10.73335 -9.51888 -9.18130 -9.02091 -7.95772 -5.26601 1.00383 1.42622 1.47683 1.53895 1.69107 1.83577 2.18734 2.35273 2.54009 3.31211 3.36706 3.62912 3.80730 3.85679 3.88263 3.91734 4.03638 4.13885 4.14245 4.23457 4.34221 4.35536 4.43177 4.44982 4.54037 4.57959 4.60880 4.70709 4.76263 4.77972 4.81646 4.87882 4.95322 4.95655 5.04447 5.06705 5.12483 5.23243 5.28072 5.33765 5.35104 5.40425 5.44215 5.47110 5.58883 5.64500 5.80426 6.24297 6.45232 6.57149 7.19814 7.28285 7.29416 8.06916 8.28689 9.27533 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.002901 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.168624 B = 9649.828842 C =11843.327082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.007 4.007 4 C -0.064 4.064 5 N -0.513 5.513 6 C 0.203 3.797 7 C -0.040 4.040 8 C 0.503 3.497 9 O -0.578 6.578 10 N -0.608 5.608 11 C 0.096 3.904 12 C -0.122 4.122 13 C -0.080 4.080 14 H 0.078 0.922 15 C -0.150 4.150 16 C -0.088 4.088 17 H 0.049 0.951 18 C 0.158 3.842 19 N -0.749 5.749 20 C -0.246 4.246 21 H 0.080 0.920 22 C -0.082 4.082 23 N -0.974 5.974 24 Si 0.979 3.021 25 H -0.273 1.273 26 H -0.297 1.297 27 H -0.276 1.276 28 C 0.132 3.868 29 N -0.550 5.550 30 H 0.433 0.567 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.028 0.972 47 H 0.024 0.976 48 H 0.369 0.631 49 H 0.250 0.750 50 H 0.067 0.933 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.911 -1.252 15.789 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.212 4.212 5 N -0.232 5.232 6 C -0.062 4.062 7 C -0.080 4.080 8 C 0.291 3.709 9 O -0.456 6.456 10 N -0.341 5.341 11 C -0.025 4.025 12 C -0.160 4.160 13 C -0.099 4.099 14 H 0.097 0.903 15 C -0.207 4.207 16 C -0.108 4.108 17 H 0.067 0.933 18 C 0.032 3.968 19 N -0.391 5.391 20 C -0.378 4.378 21 H 0.098 0.902 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.807 3.193 25 H -0.199 1.199 26 H -0.224 1.224 27 H -0.202 1.202 28 C 0.009 3.991 29 N -0.155 5.155 30 H 0.274 0.726 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.186 0.814 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.041 0.959 48 H 0.200 0.800 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -25.326 -0.734 14.737 29.311 hybrid contribution 1.281 -1.131 -0.516 1.785 sum -24.045 -1.866 14.221 27.998 Atomic orbital electron populations 1.21729 0.93254 1.02877 1.02026 1.20122 0.96826 0.86852 1.04536 1.21667 1.06900 0.97216 0.86598 1.22391 1.07907 0.90927 0.99931 1.70148 1.17864 1.25120 1.10055 1.22643 1.04366 0.88337 0.90848 1.20093 0.93173 0.95455 0.99318 1.21028 0.87896 0.79399 0.82564 1.90825 1.68264 1.56665 1.29862 1.48269 1.18657 1.34286 1.32910 1.22289 0.97016 0.99124 0.84041 1.21953 0.94005 1.01950 0.98090 1.21080 0.97864 0.95053 0.95944 0.90323 1.21963 1.01602 0.95191 1.01910 1.21537 0.93720 0.99434 0.96065 0.93254 1.20893 0.91947 0.93288 0.90713 1.42698 1.21454 1.27628 1.47344 1.19646 0.96191 1.05711 1.16272 0.90243 1.25702 1.03073 0.97563 1.01030 1.69877 1.40912 1.16252 1.35379 0.85138 0.79433 0.76936 0.77819 1.19870 1.22374 1.20168 1.21272 0.82536 0.98977 0.96347 1.42984 1.50647 1.11443 1.10442 0.72580 0.92936 0.90318 0.92752 0.89041 0.89552 0.81376 0.83065 0.83512 0.86145 0.89375 0.91793 0.86799 0.92648 0.89906 0.93777 0.95405 0.95854 0.79968 0.94181 0.91471 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.90 71.98 0.71 -0.72 16 2 C -0.04 -0.58 6.49 29.85 0.19 -0.39 16 3 C -0.01 -0.15 6.49 40.95 0.27 0.12 16 4 C -0.06 -1.85 11.79 83.52 0.98 -0.87 16 5 N -0.51 -17.69 10.60 -188.13 -1.99 -19.68 16 6 C 0.20 5.28 6.95 138.13 0.96 6.24 16 7 C -0.04 -0.74 4.68 29.10 0.14 -0.60 16 8 C 0.50 15.86 7.69 87.66 0.67 16.53 16 9 O -0.58 -26.87 14.97 -3.05 -0.05 -26.92 16 10 N -0.61 -16.39 2.98 -818.11 -2.44 -18.84 16 11 C 0.10 1.34 5.88 86.31 0.51 1.85 16 12 C -0.12 -1.68 5.63 30.67 0.17 -1.50 16 13 C -0.08 -1.72 2.71 -10.77 -0.03 -1.75 16 14 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 15 C -0.15 -2.88 8.11 71.98 0.58 -2.30 16 16 C -0.09 -2.93 2.15 -10.70 -0.02 -2.95 16 17 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 6.60 5.19 86.38 0.45 7.05 16 19 N -0.75 -41.42 5.38 -343.45 -1.85 -43.27 16 20 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 21 H 0.08 4.46 7.83 -2.92 -0.02 4.43 16 22 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 23 N -0.97 -65.14 13.06 21.65 0.28 -64.86 16 24 Si 0.98 48.98 29.55 68.60 2.03 51.01 16 25 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 27 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 28 C 0.13 4.76 5.04 86.38 0.44 5.20 16 29 N -0.55 -10.50 6.15 -174.60 -1.07 -11.58 16 30 H 0.43 4.52 8.96 -92.71 -0.83 3.69 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.15 1.30 7.69 -2.39 -0.02 1.28 16 38 H 0.15 1.84 7.96 -2.39 -0.02 1.82 16 39 H 0.12 0.71 5.97 -2.39 -0.01 0.70 16 40 H 0.09 1.05 6.69 -2.39 -0.02 1.03 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 1.10 4.98 -2.39 -0.01 1.09 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.04 1.02 6.57 -2.39 -0.02 1.01 16 46 H 0.03 1.15 6.72 -2.39 -0.02 1.13 16 47 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.37 22.54 6.89 -92.71 -0.64 21.90 16 49 H 0.25 16.22 8.31 -92.71 -0.77 15.44 16 50 H 0.07 2.36 6.69 -2.39 -0.02 2.34 16 51 H 0.04 1.97 6.20 -2.39 -0.01 1.96 16 Total: -1.00 -94.47 397.31 1.72 -92.75 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.52 Total: 33.90 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 7.33 Total: 7.47 kcal Atomic # 7 Polarization: -151.15 SS G_CDS: -7.07 Total: -158.22 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -94.47 1.72 -92.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132901813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.390 kcal (2) G-P(sol) polarization free energy of solvation -94.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds