Wall clock time and date at job start Tue Mar 31 2020 19:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46899 * 2 1 4 4 C 1.50700 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.30452 * 125.98679 * 269.99623 * 4 3 2 6 6 N 1.39928 * 108.89892 * 179.97438 * 5 4 3 7 7 H 0.97003 * 125.75437 * 180.02562 * 6 5 4 8 8 C 1.34267 * 108.49391 * 359.75376 * 6 5 4 9 9 C 1.38045 * 107.40904 * 0.39331 * 8 6 5 10 10 C 1.47430 * 126.41108 * 179.87252 * 9 8 6 11 11 O 1.21602 * 120.00137 * 139.37741 * 10 9 8 12 12 N 1.34782 * 120.00194 * 319.38108 * 10 9 8 13 13 C 1.46923 * 120.62683 * 354.35225 * 12 10 9 14 14 C 1.53190 * 108.89399 * 233.51748 * 13 12 10 15 15 C 1.53071 * 109.29684 * 305.58104 * 14 13 12 16 16 H 1.09003 * 109.45454 * 181.24264 * 15 14 13 17 17 C 1.53005 * 109.33286 * 301.13450 * 15 14 13 18 18 C 1.53034 * 109.65866 * 61.15148 * 15 14 13 19 19 H 1.08998 * 109.50090 * 58.65219 * 18 15 14 20 20 C 1.53004 * 109.52605 * 178.73294 * 18 15 14 21 21 N 1.46499 * 109.47153 * 184.85456 * 20 18 15 22 22 C 1.36933 * 119.99931 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99833 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00334 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99641 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00345 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46953 * 90.00060 * 26 24 22 28 28 H 1.48502 * 109.47398 * 209.99924 * 26 24 22 29 29 H 1.48497 * 109.47198 * 329.99890 * 26 24 22 30 30 C 1.46918 * 120.63168 * 174.33666 * 12 10 9 31 31 H 1.08999 * 109.46972 * 300.00190 * 1 2 3 32 32 H 1.08993 * 109.47082 * 60.00406 * 1 2 3 33 33 H 1.09001 * 109.46335 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.47207 * 239.99638 * 2 1 3 35 35 H 1.09000 * 109.47023 * 119.99226 * 2 1 3 36 36 H 1.08996 * 109.47769 * 59.99421 * 3 2 1 37 37 H 1.09007 * 109.46899 * 299.99778 * 3 2 1 38 38 H 1.07990 * 126.29496 * 180.23754 * 8 6 5 39 39 H 1.09001 * 109.59261 * 353.37925 * 13 12 10 40 40 H 1.09007 * 109.58767 * 113.65775 * 13 12 10 41 41 H 1.08998 * 109.49701 * 65.39671 * 14 13 12 42 42 H 1.09006 * 109.49542 * 185.48478 * 14 13 12 43 43 H 1.09000 * 109.46981 * 180.13750 * 17 15 14 44 44 H 1.08997 * 109.47218 * 300.13866 * 17 15 14 45 45 H 1.08995 * 109.47078 * 60.14333 * 17 15 14 46 46 H 1.08992 * 109.47132 * 304.85677 * 20 18 15 47 47 H 1.09002 * 109.46944 * 64.85323 * 20 18 15 48 48 H 0.97000 * 120.00327 * 359.97438 * 21 20 18 49 49 H 0.97005 * 119.99967 * 180.02562 * 25 24 22 50 50 H 1.09006 * 109.58571 * 246.19525 * 30 12 10 51 51 H 1.09001 * 109.59147 * 6.61876 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3140 1.4426 1.0546 6 7 5.6513 1.4421 0.6429 7 1 6.4246 1.4416 1.2285 8 6 5.6837 1.4364 -0.6994 9 6 4.3768 1.4422 -1.1441 10 6 3.9306 1.4417 -2.5492 11 8 2.9812 0.7603 -2.8854 12 7 4.5749 2.1964 -3.4613 13 6 5.6431 3.1177 -3.0504 14 6 5.3249 4.5170 -3.5866 15 6 5.1039 4.4407 -5.0994 16 1 4.8990 5.4387 -5.4871 17 6 6.3622 3.8827 -5.7676 18 6 3.9170 3.5230 -5.4007 19 1 3.0255 3.9064 -4.9044 20 6 3.6791 3.4740 -6.9114 21 7 2.4738 2.6895 -7.1907 22 6 2.0602 2.5066 -8.4832 23 1 2.6223 2.9410 -9.2966 24 6 0.9179 1.7637 -8.7480 25 7 0.2325 1.2347 -7.7566 26 14 0.3533 1.5149 -10.5111 27 1 0.9792 0.2863 -11.0625 28 1 -1.1247 1.3742 -10.5424 29 1 0.7564 2.6862 -11.3299 30 6 4.2228 2.1132 -4.8852 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6766 1.9563 -0.8901 38 1 6.5692 1.4309 -1.3174 39 1 5.7012 3.1479 -1.9623 40 1 6.5954 2.7781 -3.4578 41 1 4.4212 4.8934 -3.1074 42 1 6.1573 5.1870 -3.3715 43 1 6.2082 3.8298 -6.8453 44 1 7.2078 4.5362 -5.5531 45 1 6.5669 2.8846 -5.3804 46 1 3.5495 4.4871 -7.2919 47 1 4.5361 3.0095 -7.3992 48 1 1.9691 2.2990 -6.4602 49 1 -0.5655 0.7153 -7.9416 50 1 5.0588 1.6931 -5.4444 51 1 3.3437 1.4805 -5.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132941403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:50 Heat of formation + Delta-G solvation = 34.545083 kcal Electronic energy + Delta-G solvation = -30118.843810 eV Core-core repulsion = 26247.439820 eV Total energy + Delta-G solvation = -3871.403990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68828 -39.90367 -37.77059 -35.30074 -34.83224 -33.44764 -31.87151 -31.70420 -30.68052 -29.59645 -27.60046 -27.14568 -25.53684 -24.87671 -23.12158 -22.56688 -21.91318 -21.11225 -20.44688 -19.43731 -18.59197 -17.49160 -17.03776 -16.58444 -15.75767 -15.37013 -15.06299 -14.92595 -14.82452 -14.60886 -14.45237 -14.16319 -13.63645 -13.51303 -13.45357 -13.12049 -12.97662 -12.77639 -12.62603 -12.40568 -12.05638 -11.88957 -11.62390 -11.50988 -11.23426 -11.21530 -11.07092 -11.00036 -10.86001 -10.76122 -10.56581 -10.49176 -10.24038 -10.12170 -9.90779 -9.65201 -9.63758 -9.53196 -8.87710 -8.78909 -8.32360 -6.82531 -5.66104 -2.95652 1.39116 2.11185 2.47247 3.10301 3.38215 3.49442 3.53955 3.56212 4.30283 4.44839 4.63983 4.75706 4.81373 4.89380 4.92245 5.04566 5.14860 5.23025 5.27633 5.29063 5.30969 5.38423 5.50429 5.61072 5.66204 5.70118 5.72585 5.74676 5.82827 5.86813 5.91642 5.95161 6.00813 6.05287 6.07752 6.22353 6.31873 6.35301 6.36979 6.39138 6.42027 6.45413 6.65360 6.76206 6.84324 6.87329 6.95714 7.35389 7.64546 7.77668 8.46131 8.51616 9.62612 10.21262 10.55495 11.56079 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.003532 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.281760 B = 7926.423010 C =10058.865342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.041 4.041 4 C 0.134 3.866 5 N -0.298 5.298 6 N -0.466 5.466 7 H 0.442 0.558 8 C 0.094 3.906 9 C -0.271 4.271 10 C 0.586 3.414 11 O -0.521 6.521 12 N -0.607 5.607 13 C 0.102 3.898 14 C -0.128 4.128 15 C -0.085 4.085 16 H 0.072 0.928 17 C -0.152 4.152 18 C -0.102 4.102 19 H 0.073 0.927 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.122 3.878 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.185 0.815 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.019 0.981 47 H 0.022 0.978 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.067 0.933 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.325 3.984 18.580 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.080 4.080 4 C -0.034 4.034 5 N -0.120 5.120 6 N -0.171 5.171 7 H 0.286 0.714 8 C -0.057 4.057 9 C -0.286 4.286 10 C 0.374 3.626 11 O -0.397 6.397 12 N -0.340 5.340 13 C -0.021 4.021 14 C -0.166 4.166 15 C -0.104 4.104 16 H 0.090 0.910 17 C -0.209 4.209 18 C -0.121 4.121 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.377 5.377 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 C 0.001 3.999 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.202 0.798 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.040 0.960 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.816 3.619 19.485 24.745 hybrid contribution 0.191 -0.166 -1.366 1.389 sum 15.007 3.454 18.120 23.780 Atomic orbital electron populations 1.21739 0.95303 1.01795 1.01882 1.21418 0.96028 0.95092 1.02695 1.20133 0.85286 0.99045 1.03546 1.22441 0.97013 0.95260 0.88653 1.77137 0.86199 1.26326 1.22378 1.46079 1.07770 1.57849 1.05355 0.71375 1.23127 0.98899 0.98256 0.85467 1.20339 0.92206 1.21248 0.94851 1.17331 0.82280 0.79599 0.83430 1.90846 1.26841 1.41927 1.80040 1.47997 1.37059 1.40996 1.07995 1.21889 0.90394 0.89791 1.00065 1.21934 1.02005 0.96146 0.96540 1.21073 0.95416 0.99587 0.94283 0.90951 1.21985 0.96638 1.00772 1.01540 1.21673 0.97612 0.94750 0.98083 0.90815 1.20671 0.90537 0.94933 0.90578 1.42420 1.27498 1.61801 1.06028 1.19189 1.06528 1.26936 0.84632 0.91323 1.24740 0.98183 1.00806 0.97119 1.69676 1.19159 1.39273 1.29532 0.86231 0.77743 0.77800 0.84646 1.21786 1.21826 1.20867 1.21729 1.02391 0.97852 0.77965 0.93101 0.92036 0.92646 0.90362 0.92495 0.90498 0.89287 0.79809 0.90056 0.91460 0.91555 0.91090 0.91807 0.93272 0.92454 0.96291 0.96028 0.78041 0.93516 0.91510 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.11 -1.44 5.92 -26.73 -0.16 -1.59 16 3 C -0.04 -0.51 5.29 -27.88 -0.15 -0.66 16 4 C 0.13 1.73 6.51 -82.02 -0.53 1.20 16 5 N -0.30 -3.51 12.63 33.89 0.43 -3.08 16 6 N -0.47 -3.74 7.29 30.85 0.22 -3.51 16 7 H 0.44 1.83 8.96 -182.72 -1.64 0.19 16 8 C 0.09 0.80 9.64 -16.56 -0.16 0.64 16 9 C -0.27 -3.42 5.21 -105.07 -0.55 -3.97 16 10 C 0.59 9.18 7.33 -12.51 -0.09 9.09 16 11 O -0.52 -10.42 15.47 5.28 0.08 -10.33 16 12 N -0.61 -8.36 2.97 -174.03 -0.52 -8.88 16 13 C 0.10 0.98 5.00 -3.71 -0.02 0.96 16 14 C -0.13 -1.27 5.63 -26.60 -0.15 -1.42 16 15 C -0.08 -1.02 2.71 -90.56 -0.25 -1.26 16 16 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.15 -1.65 8.11 37.16 0.30 -1.35 16 18 C -0.10 -1.64 2.15 -90.50 -0.19 -1.84 16 19 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.21 5.19 -4.04 -0.02 3.19 16 21 N -0.73 -18.90 5.38 -59.91 -0.32 -19.22 16 22 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 26 Si 0.90 22.87 29.55 -169.99 -5.02 17.84 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 C 0.12 2.02 5.06 -3.71 -0.02 2.00 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.18 7.66 -51.93 -0.40 0.78 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.24 7.81 -51.92 -0.41 0.84 16 38 H 0.19 0.91 7.35 -52.49 -0.39 0.53 16 39 H 0.08 0.67 4.82 -51.93 -0.25 0.42 16 40 H 0.07 0.54 6.70 -51.92 -0.35 0.19 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.61 4.98 -51.93 -0.26 0.35 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.02 0.43 6.73 -51.93 -0.35 0.08 16 48 H 0.39 10.67 6.89 -40.82 -0.28 10.39 16 49 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 50 H 0.07 1.06 6.69 -51.93 -0.35 0.71 16 51 H 0.10 2.18 6.19 -51.93 -0.32 1.86 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -35.30 393.90 -9.85 -45.15 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -9.52 Total: 8.19 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.86 Total: -3.86 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.54 Total: -62.92 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.30 -9.85 -45.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132941403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.697 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds