Wall clock time and date at job start Tue Mar 31 2020 19:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46899 * 2 1 4 4 C 1.50700 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.30452 * 125.98679 * 269.99623 * 4 3 2 6 6 N 1.39928 * 108.89892 * 179.97438 * 5 4 3 7 7 H 0.97003 * 125.75437 * 180.02562 * 6 5 4 8 8 C 1.34267 * 108.49391 * 359.75376 * 6 5 4 9 9 C 1.38045 * 107.40904 * 0.39331 * 8 6 5 10 10 C 1.47430 * 126.41108 * 179.87252 * 9 8 6 11 11 O 1.21602 * 120.00137 * 139.37741 * 10 9 8 12 12 N 1.34782 * 120.00194 * 319.38108 * 10 9 8 13 13 C 1.46923 * 120.62683 * 354.35225 * 12 10 9 14 14 C 1.53190 * 108.89399 * 233.51748 * 13 12 10 15 15 C 1.53071 * 109.29684 * 305.58104 * 14 13 12 16 16 H 1.09003 * 109.45454 * 181.24264 * 15 14 13 17 17 C 1.53005 * 109.33286 * 301.13450 * 15 14 13 18 18 C 1.53034 * 109.65866 * 61.15148 * 15 14 13 19 19 H 1.08998 * 109.50090 * 58.65219 * 18 15 14 20 20 C 1.53004 * 109.52605 * 178.73294 * 18 15 14 21 21 N 1.46499 * 109.47153 * 184.85456 * 20 18 15 22 22 C 1.36933 * 119.99931 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99833 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00334 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99641 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00345 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46953 * 90.00060 * 26 24 22 28 28 H 1.48502 * 109.47398 * 209.99924 * 26 24 22 29 29 H 1.48497 * 109.47198 * 329.99890 * 26 24 22 30 30 C 1.46918 * 120.63168 * 174.33666 * 12 10 9 31 31 H 1.08999 * 109.46972 * 300.00190 * 1 2 3 32 32 H 1.08993 * 109.47082 * 60.00406 * 1 2 3 33 33 H 1.09001 * 109.46335 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.47207 * 239.99638 * 2 1 3 35 35 H 1.09000 * 109.47023 * 119.99226 * 2 1 3 36 36 H 1.08996 * 109.47769 * 59.99421 * 3 2 1 37 37 H 1.09007 * 109.46899 * 299.99778 * 3 2 1 38 38 H 1.07990 * 126.29496 * 180.23754 * 8 6 5 39 39 H 1.09001 * 109.59261 * 353.37925 * 13 12 10 40 40 H 1.09007 * 109.58767 * 113.65775 * 13 12 10 41 41 H 1.08998 * 109.49701 * 65.39671 * 14 13 12 42 42 H 1.09006 * 109.49542 * 185.48478 * 14 13 12 43 43 H 1.09000 * 109.46981 * 180.13750 * 17 15 14 44 44 H 1.08997 * 109.47218 * 300.13866 * 17 15 14 45 45 H 1.08995 * 109.47078 * 60.14333 * 17 15 14 46 46 H 1.08992 * 109.47132 * 304.85677 * 20 18 15 47 47 H 1.09002 * 109.46944 * 64.85323 * 20 18 15 48 48 H 0.97000 * 120.00327 * 359.97438 * 21 20 18 49 49 H 0.97005 * 119.99967 * 180.02562 * 25 24 22 50 50 H 1.09006 * 109.58571 * 246.19525 * 30 12 10 51 51 H 1.09001 * 109.59147 * 6.61876 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3140 1.4426 1.0546 6 7 5.6513 1.4421 0.6429 7 1 6.4246 1.4416 1.2285 8 6 5.6837 1.4364 -0.6994 9 6 4.3768 1.4422 -1.1441 10 6 3.9306 1.4417 -2.5492 11 8 2.9812 0.7603 -2.8854 12 7 4.5749 2.1964 -3.4613 13 6 5.6431 3.1177 -3.0504 14 6 5.3249 4.5170 -3.5866 15 6 5.1039 4.4407 -5.0994 16 1 4.8990 5.4387 -5.4871 17 6 6.3622 3.8827 -5.7676 18 6 3.9170 3.5230 -5.4007 19 1 3.0255 3.9064 -4.9044 20 6 3.6791 3.4740 -6.9114 21 7 2.4738 2.6895 -7.1907 22 6 2.0602 2.5066 -8.4832 23 1 2.6223 2.9410 -9.2966 24 6 0.9179 1.7637 -8.7480 25 7 0.2325 1.2347 -7.7566 26 14 0.3533 1.5149 -10.5111 27 1 0.9792 0.2863 -11.0625 28 1 -1.1247 1.3742 -10.5424 29 1 0.7564 2.6862 -11.3299 30 6 4.2228 2.1132 -4.8852 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6766 1.9563 -0.8901 38 1 6.5692 1.4309 -1.3174 39 1 5.7012 3.1479 -1.9623 40 1 6.5954 2.7781 -3.4578 41 1 4.4212 4.8934 -3.1074 42 1 6.1573 5.1870 -3.3715 43 1 6.2082 3.8298 -6.8453 44 1 7.2078 4.5362 -5.5531 45 1 6.5669 2.8846 -5.3804 46 1 3.5495 4.4871 -7.2919 47 1 4.5361 3.0095 -7.3992 48 1 1.9691 2.2990 -6.4602 49 1 -0.5655 0.7153 -7.9416 50 1 5.0588 1.6931 -5.4444 51 1 3.3437 1.4805 -5.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132941403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:49 Heat of formation + Delta-G solvation = 9.871351 kcal Electronic energy + Delta-G solvation = -30119.913743 eV Core-core repulsion = 26247.439820 eV Total energy + Delta-G solvation = -3872.473924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.56238 -41.01292 -39.00900 -36.63438 -36.18176 -34.83713 -33.45621 -32.59170 -31.94125 -30.94848 -28.65752 -28.12592 -27.12590 -25.95828 -24.88268 -23.47844 -22.91771 -22.51290 -21.46328 -20.42196 -19.72407 -18.96490 -18.41941 -17.74173 -16.89596 -16.72414 -16.38079 -16.08708 -15.92694 -15.66826 -15.53995 -15.37299 -15.25748 -14.85678 -14.51799 -14.46050 -14.23381 -14.03074 -13.79275 -13.72134 -13.04132 -13.00309 -12.90020 -12.82991 -12.60783 -12.48362 -12.38995 -12.20346 -12.10087 -12.04512 -11.93004 -11.88094 -11.67095 -11.51884 -11.30476 -11.17952 -10.90677 -10.83787 -10.48733 -9.79769 -9.43759 -8.97953 -7.92060 -5.22501 0.61677 1.11059 1.45937 1.49040 1.57415 1.76291 2.03907 2.30440 2.56958 3.40584 3.41008 3.68747 3.72212 3.85128 3.90956 3.99854 4.08486 4.13550 4.16102 4.26616 4.33515 4.36574 4.41169 4.47839 4.57138 4.59117 4.61803 4.75001 4.79303 4.80966 4.83287 4.89597 4.92505 4.96546 5.03476 5.09266 5.14587 5.22371 5.30354 5.33405 5.34604 5.37729 5.40851 5.45894 5.50802 5.62665 5.66687 6.28197 6.28910 6.48134 6.60570 7.31073 7.33653 8.11008 8.33009 9.31327 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.003532 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.281760 B = 7926.423010 C =10058.865342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.039 4.039 4 C 0.118 3.882 5 N -0.314 5.314 6 N -0.442 5.442 7 H 0.463 0.537 8 C 0.132 3.868 9 C -0.308 4.308 10 C 0.581 3.419 11 O -0.583 6.583 12 N -0.602 5.602 13 C 0.096 3.904 14 C -0.123 4.123 15 C -0.079 4.079 16 H 0.075 0.925 17 C -0.148 4.148 18 C -0.090 4.090 19 H 0.043 0.957 20 C 0.160 3.840 21 N -0.748 5.748 22 C -0.246 4.246 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.976 3.024 27 H -0.286 1.286 28 H -0.297 1.297 29 H -0.266 1.266 30 C 0.133 3.867 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.231 0.769 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.111 0.889 43 H 0.046 0.954 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.020 0.980 47 H 0.033 0.967 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.077 0.923 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.422 5.464 19.662 28.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.079 4.079 4 C -0.049 4.049 5 N -0.137 5.137 6 N -0.149 5.149 7 H 0.312 0.688 8 C -0.021 4.021 9 C -0.323 4.323 10 C 0.371 3.629 11 O -0.463 6.463 12 N -0.334 5.334 13 C -0.025 4.025 14 C -0.161 4.161 15 C -0.098 4.098 16 H 0.093 0.907 17 C -0.205 4.205 18 C -0.110 4.110 19 H 0.062 0.938 20 C 0.034 3.966 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.190 1.190 30 C 0.010 3.990 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.247 0.753 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.050 0.950 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.095 0.905 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.008 5.164 20.597 28.499 hybrid contribution -0.972 -0.575 -1.659 2.006 sum 18.036 4.589 18.938 26.552 Atomic orbital electron populations 1.21726 0.94588 1.02235 1.01921 1.21324 0.96669 0.95102 1.01476 1.20038 0.86224 0.98662 1.02935 1.22406 0.97041 0.96098 0.89317 1.77077 0.87688 1.26869 1.22068 1.46096 1.07326 1.55775 1.05710 0.68838 1.23617 0.98452 0.94457 0.85624 1.20145 0.94253 1.25068 0.92830 1.17865 0.81459 0.78776 0.84836 1.90816 1.29700 1.44596 1.81204 1.48033 1.37731 1.41270 1.06364 1.22288 0.89967 0.88579 1.01651 1.21938 1.02914 0.97055 0.94181 1.21058 0.93900 0.98343 0.96511 0.90667 1.21954 0.96686 1.01639 1.00209 1.21528 0.98773 0.95680 0.94977 0.93808 1.20863 0.88460 0.93820 0.93504 1.42694 1.29119 1.62402 1.04871 1.19666 1.06296 1.25837 0.85931 0.90314 1.25642 0.98730 1.01295 1.01398 1.69878 1.19674 1.40707 1.31919 0.85109 0.76626 0.78158 0.79683 1.21331 1.22384 1.19044 1.21347 1.00405 0.96972 0.80317 0.90948 0.94011 0.92028 0.93666 0.91341 0.88872 0.91920 0.75251 0.87884 0.88158 0.93216 0.87032 0.93498 0.89995 0.92115 0.96168 0.94964 0.79831 0.94179 0.90483 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.11 -2.90 5.92 30.60 0.18 -2.72 16 3 C -0.04 -1.05 5.29 29.85 0.16 -0.89 16 4 C 0.12 3.05 6.51 43.51 0.28 3.33 16 5 N -0.31 -6.80 12.63 -46.68 -0.59 -7.39 16 6 N -0.44 -5.42 7.29 -56.32 -0.41 -5.83 16 7 H 0.46 1.65 8.96 -213.43 -1.91 -0.26 16 8 C 0.13 1.73 9.64 84.27 0.81 2.55 16 9 C -0.31 -7.53 5.21 -20.15 -0.10 -7.64 16 10 C 0.58 18.98 7.33 86.66 0.64 19.62 16 11 O -0.58 -25.78 15.47 -4.04 -0.06 -25.84 16 12 N -0.60 -16.49 2.97 -822.77 -2.45 -18.94 16 13 C 0.10 1.50 5.00 86.36 0.43 1.93 16 14 C -0.12 -2.02 5.63 30.68 0.17 -1.84 16 15 C -0.08 -1.74 2.71 -10.76 -0.03 -1.77 16 16 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 17 C -0.15 -2.67 8.11 71.98 0.58 -2.09 16 18 C -0.09 -2.99 2.15 -10.72 -0.02 -3.02 16 19 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 20 C 0.16 6.55 5.19 86.38 0.45 6.99 16 21 N -0.75 -40.52 5.38 -343.46 -1.85 -42.37 16 22 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 23 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 25 N -0.97 -63.60 13.06 21.65 0.28 -63.32 16 26 Si 0.98 48.11 29.55 68.60 2.03 50.14 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 28 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 29 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 30 C 0.13 4.59 5.06 86.37 0.44 5.02 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.51 7.66 -2.39 -0.02 1.50 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.97 7.81 -2.38 -0.02 1.95 16 38 H 0.23 0.82 7.35 -2.92 -0.02 0.80 16 39 H 0.10 1.20 4.82 -2.39 -0.01 1.19 16 40 H 0.10 1.00 6.70 -2.38 -0.02 0.99 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.05 1.02 6.58 -2.39 -0.02 1.00 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.06 4.98 -2.39 -0.01 1.05 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.03 1.27 6.73 -2.39 -0.02 1.26 16 48 H 0.37 22.11 6.89 -92.71 -0.64 21.47 16 49 H 0.25 15.84 8.31 -92.70 -0.77 15.07 16 50 H 0.08 2.46 6.69 -2.38 -0.02 2.45 16 51 H 0.05 2.21 6.19 -2.39 -0.01 2.19 16 Total: -1.00 -85.08 393.90 1.36 -83.71 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -1.60 Total: 31.05 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 6.01 Total: -1.22 kcal Atomic # 7 Polarization: -132.83 SS G_CDS: -5.01 Total: -137.84 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -85.08 1.36 -83.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132941403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.585 kcal (2) G-P(sol) polarization free energy of solvation -85.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds