Wall clock time and date at job start Tue Mar 31 2020 19:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 C 1.50703 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98575 * 269.97588 * 4 3 2 6 6 N 1.39933 * 108.89780 * 180.02562 * 5 4 3 7 7 H 0.96993 * 125.75797 * 180.02562 * 6 5 4 8 8 C 1.34262 * 108.48875 * 359.74556 * 6 5 4 9 9 C 1.38043 * 107.42028 * 0.39866 * 8 6 5 10 10 C 1.47429 * 126.41950 * 179.86786 * 9 8 6 11 11 O 1.21596 * 120.00106 * 230.60848 * 10 9 8 12 12 N 1.34774 * 119.99740 * 50.33174 * 10 9 8 13 13 C 1.46935 * 120.63247 * 355.62694 * 12 10 9 14 14 C 1.53617 * 108.54332 * 126.36639 * 13 12 10 15 15 C 1.53040 * 109.24218 * 54.86012 * 14 13 12 16 16 H 1.09002 * 109.46531 * 178.48779 * 15 14 13 17 17 C 1.53000 * 109.44970 * 58.52098 * 15 14 13 18 18 C 1.53048 * 109.53634 * 298.51085 * 15 14 13 19 19 H 1.08994 * 109.49534 * 301.41032 * 18 15 14 20 20 C 1.53007 * 109.52424 * 181.33095 * 18 15 14 21 21 N 1.46493 * 109.46873 * 175.14669 * 20 18 15 22 22 C 1.36939 * 119.99635 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00517 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00016 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99837 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00155 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47322 * 59.99562 * 26 24 22 28 28 H 1.48494 * 109.47227 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46741 * 299.99483 * 26 24 22 30 30 C 1.46926 * 120.63174 * 175.91015 * 12 10 9 31 31 H 1.09005 * 109.46930 * 59.99729 * 1 2 3 32 32 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46917 * 299.99979 * 1 2 3 34 34 H 1.09002 * 109.46917 * 240.00021 * 2 1 3 35 35 H 1.09005 * 109.46930 * 120.00271 * 2 1 3 36 36 H 1.09002 * 109.47116 * 60.00143 * 3 2 1 37 37 H 1.09001 * 109.46897 * 299.99912 * 3 2 1 38 38 H 1.07998 * 126.28991 * 180.23882 * 8 6 5 39 39 H 1.08997 * 109.58595 * 246.20221 * 13 12 10 40 40 H 1.08999 * 109.58249 * 6.62911 * 13 12 10 41 41 H 1.08998 * 109.63854 * 294.87161 * 14 13 12 42 42 H 1.08992 * 109.43274 * 174.72705 * 14 13 12 43 43 H 1.09003 * 109.46975 * 299.93944 * 17 15 14 44 44 H 1.08996 * 109.47179 * 59.94045 * 17 15 14 45 45 H 1.08998 * 109.47557 * 179.97438 * 17 15 14 46 46 H 1.08995 * 109.47040 * 295.14784 * 20 18 15 47 47 H 1.09005 * 109.46997 * 55.14242 * 20 18 15 48 48 H 0.96994 * 120.00606 * 359.97438 * 21 20 18 49 49 H 0.97003 * 119.99713 * 179.97438 * 25 24 22 50 50 H 1.08995 * 109.58393 * 353.37100 * 30 12 10 51 51 H 1.08998 * 109.59159 * 113.79863 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3140 1.4427 1.0546 6 7 5.6514 1.4431 0.6428 7 1 6.4247 1.4430 1.2283 8 6 5.6837 1.4375 -0.6994 9 6 4.3769 1.4426 -1.1442 10 6 3.9306 1.4420 -2.5493 11 8 3.1134 2.2588 -2.9280 12 7 4.4326 0.5396 -3.4153 13 6 5.4942 -0.3873 -2.9993 14 6 5.0407 -1.8214 -3.3116 15 6 4.6649 -1.9205 -4.7918 16 1 4.3681 -2.9434 -5.0235 17 6 5.8703 -1.5326 -5.6506 18 6 3.5010 -0.9721 -5.0890 19 1 2.6500 -1.2323 -4.4595 20 6 3.1037 -1.0958 -6.5614 21 7 1.9173 -0.2755 -6.8175 22 6 1.3755 -0.2290 -8.0743 23 1 1.8230 -0.7967 -8.8768 24 6 0.2516 0.5486 -8.3173 25 7 -0.2935 1.2409 -7.3395 26 14 -0.4880 0.6116 -10.0315 27 1 -0.9010 -0.7542 -10.4429 28 1 -1.6732 1.5062 -10.0268 29 1 0.5220 1.1323 -10.9874 30 6 3.9331 0.4679 -4.7952 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 6.5693 1.4326 -1.3175 39 1 6.4099 -0.1633 -3.5465 40 1 5.6710 -0.2834 -1.9288 41 1 4.1752 -2.0735 -2.6989 42 1 5.8541 -2.5140 -3.0956 43 1 6.1669 -0.5095 -5.4194 44 1 6.6994 -2.2079 -5.4391 45 1 5.6032 -1.6035 -6.7049 46 1 3.9255 -0.7522 -7.1895 47 1 2.8817 -2.1379 -6.7915 48 1 1.5151 0.2340 -6.0969 49 1 -1.0787 1.7846 -7.5094 50 1 3.0797 1.1361 -4.9100 51 1 4.7241 0.7601 -5.4859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132941404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:56 Heat of formation + Delta-G solvation = 9.766737 kcal Electronic energy + Delta-G solvation = -30355.499955 eV Core-core repulsion = 26483.021496 eV Total energy + Delta-G solvation = -3872.478460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.56506 -41.02404 -39.04381 -36.61591 -36.23739 -34.85122 -33.45239 -32.59950 -31.94116 -30.95010 -28.65336 -28.14218 -27.14051 -25.97667 -24.88334 -23.48506 -22.94516 -22.51457 -21.44167 -20.46975 -19.70280 -18.95027 -18.48914 -17.79954 -16.89991 -16.72351 -16.44535 -16.02188 -15.94696 -15.66291 -15.58351 -15.38579 -15.24716 -14.94464 -14.49300 -14.47868 -14.20634 -14.11802 -13.75548 -13.72456 -13.05621 -13.01428 -12.89712 -12.81076 -12.59533 -12.49540 -12.41675 -12.23793 -12.14776 -12.05593 -11.92895 -11.87892 -11.68649 -11.63486 -11.30477 -11.17963 -10.89767 -10.87038 -10.48687 -9.78141 -9.46937 -8.97756 -7.91778 -5.22186 0.64818 1.13881 1.46007 1.50307 1.56563 1.73949 1.94476 2.26265 2.57222 3.38954 3.40760 3.67302 3.72614 3.85323 3.90073 3.97025 4.08257 4.11425 4.13089 4.24281 4.31810 4.35825 4.40412 4.47133 4.55767 4.58830 4.61577 4.74710 4.78409 4.78754 4.82777 4.88858 4.91970 4.96088 5.02731 5.06825 5.14381 5.21541 5.24999 5.29715 5.33947 5.35723 5.39064 5.45222 5.50581 5.60255 5.65737 6.28338 6.29306 6.47410 6.58648 7.26562 7.33892 8.11152 8.33161 9.31364 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.003517 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.985139 B = 7959.535548 C = 9292.634784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.312 5.312 6 N -0.442 5.442 7 H 0.463 0.537 8 C 0.129 3.871 9 C -0.307 4.307 10 C 0.585 3.415 11 O -0.590 6.590 12 N -0.599 5.599 13 C 0.096 3.904 14 C -0.122 4.122 15 C -0.079 4.079 16 H 0.076 0.924 17 C -0.148 4.148 18 C -0.089 4.089 19 H 0.046 0.954 20 C 0.160 3.840 21 N -0.748 5.748 22 C -0.247 4.247 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.976 3.024 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.276 1.276 30 C 0.132 3.868 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.232 0.768 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.032 0.968 47 H 0.021 0.979 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.046 0.954 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.295 -6.611 18.621 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.089 4.089 4 C -0.049 4.049 5 N -0.136 5.136 6 N -0.149 5.149 7 H 0.312 0.688 8 C -0.024 4.024 9 C -0.322 4.322 10 C 0.374 3.626 11 O -0.470 6.470 12 N -0.331 5.331 13 C -0.025 4.025 14 C -0.160 4.160 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.205 4.205 18 C -0.109 4.109 19 H 0.064 0.936 20 C 0.034 3.966 21 N -0.391 5.391 22 C -0.379 4.379 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.804 3.196 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.202 1.202 30 C 0.009 3.991 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.049 0.951 47 H 0.039 0.961 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.928 -6.236 19.536 28.595 hybrid contribution -1.027 0.663 -1.601 2.014 sum 18.901 -5.573 17.935 26.645 Atomic orbital electron populations 1.21760 0.94736 1.02402 1.01951 1.21327 0.96558 0.94555 1.01736 1.20155 0.86429 0.98936 1.03414 1.22340 0.96922 0.96414 0.89242 1.77070 0.87701 1.26763 1.22018 1.46066 1.07284 1.55889 1.05666 0.68832 1.23552 0.98310 0.94919 0.85660 1.20109 0.94421 1.24871 0.92762 1.17860 0.79953 0.79888 0.84860 1.90805 1.36553 1.40364 1.79304 1.48072 1.39080 1.34951 1.10953 1.22381 0.89636 0.88195 1.02317 1.21990 1.02365 0.96821 0.94806 1.21059 0.94134 0.98350 0.96262 0.90541 1.21954 0.97231 1.02124 0.99209 1.21531 0.98398 0.95221 0.95709 0.93586 1.20862 0.88372 0.93517 0.93892 1.42675 1.31974 1.55567 1.08836 1.19631 1.07505 1.22133 0.88613 0.90341 1.25639 0.99617 1.00294 1.01438 1.69868 1.24499 1.34775 1.32986 0.85184 0.77421 0.77418 0.79574 1.20146 1.22379 1.20159 1.21353 0.98911 0.96836 0.81974 0.94222 0.91643 0.91056 0.93752 0.90539 0.89002 0.91709 0.75195 0.88290 0.87745 0.93002 0.87182 0.92261 0.89996 0.93470 0.95066 0.96071 0.79844 0.94173 0.93500 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.91 71.98 0.71 -2.83 16 2 C -0.10 -2.54 5.92 30.60 0.18 -2.36 16 3 C -0.05 -1.36 5.61 29.85 0.17 -1.19 16 4 C 0.12 3.06 6.52 43.52 0.28 3.35 16 5 N -0.31 -6.82 12.63 -46.67 -0.59 -7.41 16 6 N -0.44 -5.48 7.29 -56.32 -0.41 -5.89 16 7 H 0.46 1.71 8.96 -213.44 -1.91 -0.20 16 8 C 0.13 1.72 9.66 84.28 0.81 2.53 16 9 C -0.31 -7.59 5.14 -20.15 -0.10 -7.70 16 10 C 0.59 19.35 7.34 86.66 0.64 19.99 16 11 O -0.59 -26.63 15.70 -4.02 -0.06 -26.69 16 12 N -0.60 -16.62 2.97 -821.96 -2.44 -19.06 16 13 C 0.10 1.52 5.46 86.50 0.47 1.99 16 14 C -0.12 -2.00 5.64 30.82 0.17 -1.82 16 15 C -0.08 -1.74 2.71 -10.76 -0.03 -1.77 16 16 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.15 -2.72 8.11 71.98 0.58 -2.14 16 18 C -0.09 -2.95 2.15 -10.71 -0.02 -2.97 16 19 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 20 C 0.16 6.54 5.19 86.38 0.45 6.99 16 21 N -0.75 -40.42 5.38 -343.45 -1.85 -42.27 16 22 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 23 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 24 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 25 N -0.97 -63.43 13.06 21.65 0.28 -63.14 16 26 Si 0.98 48.06 29.55 68.60 2.03 50.09 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 C 0.13 4.62 5.04 86.36 0.43 5.06 16 31 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.19 7.23 -2.39 -0.02 2.17 16 38 H 0.23 0.83 7.62 -2.91 -0.02 0.80 16 39 H 0.10 1.08 6.68 -2.39 -0.02 1.06 16 40 H 0.10 1.22 4.58 -2.39 -0.01 1.21 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.07 4.96 -2.39 -0.01 1.06 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.03 6.57 -2.39 -0.02 1.02 16 46 H 0.03 1.24 6.73 -2.39 -0.02 1.22 16 47 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 48 H 0.37 22.03 6.89 -92.71 -0.64 21.39 16 49 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 50 H 0.05 2.19 6.23 -2.39 -0.01 2.17 16 51 H 0.08 2.46 6.69 -2.39 -0.02 2.44 16 Total: -1.00 -85.24 394.78 1.42 -83.82 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -1.60 Total: 31.26 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 6.06 Total: -0.70 kcal Atomic # 7 Polarization: -132.77 SS G_CDS: -5.00 Total: -137.77 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -85.24 1.42 -83.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132941404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.587 kcal (2) G-P(sol) polarization free energy of solvation -85.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds