Wall clock time and date at job start Tue Mar 31 2020 19:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47281 * 2 1 4 4 C 1.50706 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.30440 * 125.98907 * 270.16887 * 4 3 2 6 6 N 1.39932 * 108.89586 * 180.26443 * 5 4 3 7 7 H 0.97005 * 125.75148 * 179.73915 * 6 5 4 8 8 C 1.34256 * 108.49364 * 359.73619 * 6 5 4 9 9 C 1.38048 * 107.41615 * 0.02562 * 8 6 5 10 10 C 1.47428 * 126.41374 * 179.97438 * 9 8 6 11 11 O 1.21606 * 119.99591 * 139.22566 * 10 9 8 12 12 N 1.34771 * 120.00465 * 319.22923 * 10 9 8 13 13 C 1.46925 * 120.62822 * 354.36557 * 12 10 9 14 14 C 1.53187 * 108.89549 * 233.67537 * 13 12 10 15 15 C 1.53039 * 109.31301 * 305.29669 * 14 13 12 16 16 H 1.08999 * 109.46069 * 301.34056 * 15 14 13 17 17 C 1.53005 * 109.45799 * 181.38551 * 15 14 13 18 18 C 1.53036 * 109.53755 * 61.36337 * 15 14 13 19 19 H 1.09002 * 109.49731 * 58.58878 * 18 15 14 20 20 C 1.52999 * 109.49736 * 178.64722 * 18 15 14 21 21 N 1.46500 * 109.47367 * 184.99878 * 20 18 15 22 22 C 1.36930 * 120.00065 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00526 * 0.02562 * 22 21 20 24 24 C 1.38818 * 119.99932 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99961 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 119.99962 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47284 * 89.99546 * 26 24 22 28 28 H 1.48503 * 109.47134 * 209.99549 * 26 24 22 29 29 H 1.48504 * 109.47260 * 329.99718 * 26 24 22 30 30 C 1.47202 * 120.81668 * 174.50733 * 12 10 9 31 31 H 1.08994 * 109.47373 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46671 * 300.00325 * 1 2 3 33 33 H 1.09000 * 109.46566 * 59.99881 * 1 2 3 34 34 H 1.09002 * 109.46671 * 239.99675 * 2 1 3 35 35 H 1.09000 * 109.46566 * 120.00119 * 2 1 3 36 36 H 1.09002 * 109.47533 * 60.00203 * 3 2 1 37 37 H 1.08999 * 109.47041 * 299.99983 * 3 2 1 38 38 H 1.08002 * 126.29210 * 179.97438 * 8 6 5 39 39 H 1.08999 * 109.58579 * 113.81918 * 13 12 10 40 40 H 1.09000 * 109.58838 * 353.53654 * 13 12 10 41 41 H 1.09006 * 109.49559 * 65.24914 * 14 13 12 42 42 H 1.09008 * 109.50002 * 185.34019 * 14 13 12 43 43 H 1.08993 * 109.47405 * 59.99739 * 17 15 14 44 44 H 1.09002 * 109.47030 * 180.02562 * 17 15 14 45 45 H 1.09006 * 109.47018 * 299.99589 * 17 15 14 46 46 H 1.09000 * 109.47632 * 305.00308 * 20 18 15 47 47 H 1.09006 * 109.46966 * 65.00054 * 20 18 15 48 48 H 0.97000 * 119.99564 * 0.02562 * 21 20 18 49 49 H 0.96998 * 119.99543 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.53092 * 6.53803 * 30 12 10 51 51 H 1.08998 * 109.67699 * 246.23198 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3132 1.4394 1.0564 6 7 5.6509 1.4466 0.6457 7 1 6.4237 1.4498 1.2319 8 6 5.6843 1.4483 -0.6965 9 6 4.3778 1.4428 -1.1423 10 6 3.9327 1.4428 -2.5478 11 8 2.9921 0.7510 -2.8877 12 7 4.5682 2.2094 -3.4560 13 6 5.6247 3.1420 -3.0403 14 6 5.2876 4.5403 -3.5672 15 6 5.0729 4.4726 -5.0809 16 1 5.9743 4.0888 -5.5587 17 6 4.7699 5.8737 -5.6159 18 6 3.8968 3.5435 -5.3900 19 1 3.0004 3.9133 -4.8922 20 6 3.6616 3.5029 -6.9012 21 7 2.4638 2.7096 -7.1879 22 6 2.0537 2.5320 -8.4823 23 1 2.6135 2.9765 -9.2920 24 6 0.9191 1.7799 -8.7539 25 7 0.5252 1.6088 -9.9981 26 14 -0.0488 1.0106 -7.3537 27 1 -1.0921 1.9612 -6.8922 28 1 -0.6936 -0.2408 -7.8266 29 1 0.8699 0.6997 -6.2291 30 6 4.2182 2.1338 -4.8838 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6768 1.9562 -0.8900 38 1 6.5704 1.4538 -1.3139 39 1 6.5808 2.8175 -3.4509 40 1 5.6836 3.1659 -1.9521 41 1 4.3781 4.9007 -3.0864 42 1 6.1103 5.2205 -3.3464 43 1 5.6079 6.5354 -5.3969 44 1 4.6165 5.8257 -6.6940 45 1 3.8689 6.2582 -5.1379 46 1 3.5234 4.5174 -7.2749 47 1 4.5234 3.0495 -7.3910 48 1 1.9612 2.3101 -6.4608 49 1 -0.2679 1.0836 -10.1879 50 1 3.3466 1.4920 -5.0118 51 1 5.0580 1.7261 -5.4464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132941405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:02 Heat of formation + Delta-G solvation = 34.527799 kcal Electronic energy + Delta-G solvation = -30130.678206 eV Core-core repulsion = 26259.273466 eV Total energy + Delta-G solvation = -3871.404740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78564 -39.86991 -37.83437 -35.44767 -35.03063 -33.73985 -31.98502 -31.80908 -30.89043 -29.99422 -28.19949 -27.26291 -25.83448 -24.10446 -22.93948 -22.29813 -21.98552 -21.09065 -20.60037 -19.79593 -19.35130 -17.91316 -17.45096 -16.66032 -15.91298 -15.46553 -15.16520 -14.86687 -14.79814 -14.59320 -14.32063 -14.04234 -13.96395 -13.79868 -13.34509 -13.29046 -13.06363 -12.92962 -12.65999 -12.52063 -12.17397 -11.96877 -11.80217 -11.71045 -11.60726 -11.33544 -11.24556 -11.17132 -10.96536 -10.83591 -10.62189 -10.61084 -10.30263 -10.11664 -9.99467 -9.76652 -9.74188 -9.49789 -8.98962 -8.82229 -8.51444 -7.15054 -5.70047 -3.05239 1.29291 1.99972 2.37671 2.95499 3.23443 3.48449 3.55467 3.58026 4.19493 4.34922 4.61260 4.68725 4.69245 4.78346 4.81921 4.88828 5.02900 5.07811 5.15796 5.18215 5.20209 5.31148 5.39716 5.55812 5.57791 5.61145 5.62282 5.65142 5.70782 5.74497 5.78914 5.79567 5.88564 5.89190 5.95879 6.05664 6.14305 6.20144 6.22113 6.27845 6.32762 6.38412 6.41648 6.58665 6.75382 6.77872 6.81479 7.25229 7.49214 8.05817 8.30061 8.49056 9.28636 10.01568 10.20954 11.48230 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.004062 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.666331 B = 6891.208211 C = 9084.335001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.041 4.041 4 C 0.134 3.866 5 N -0.296 5.296 6 N -0.464 5.464 7 H 0.443 0.557 8 C 0.096 3.904 9 C -0.274 4.274 10 C 0.589 3.411 11 O -0.527 6.527 12 N -0.608 5.608 13 C 0.102 3.898 14 C -0.128 4.128 15 C -0.083 4.083 16 H 0.072 0.928 17 C -0.149 4.149 18 C -0.106 4.106 19 H 0.074 0.926 20 C 0.163 3.837 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.089 0.911 24 C 0.006 3.994 25 N -0.936 5.936 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.270 1.270 30 C 0.120 3.880 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.186 0.814 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.035 0.965 47 H 0.026 0.974 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.098 0.902 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.605 3.966 23.798 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.080 4.080 4 C -0.034 4.034 5 N -0.119 5.119 6 N -0.169 5.169 7 H 0.287 0.713 8 C -0.056 4.056 9 C -0.289 4.289 10 C 0.376 3.624 11 O -0.403 6.403 12 N -0.342 5.342 13 C -0.021 4.021 14 C -0.166 4.166 15 C -0.102 4.102 16 H 0.091 0.909 17 C -0.206 4.206 18 C -0.125 4.125 19 H 0.092 0.908 20 C 0.035 3.965 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.190 4.190 25 N -0.584 5.584 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.196 1.196 30 C -0.001 4.001 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.203 0.797 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.044 0.956 48 H 0.195 0.805 49 H 0.069 0.931 50 H 0.116 0.884 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.119 3.589 24.631 28.617 hybrid contribution -0.081 -0.518 0.262 0.586 sum 14.038 3.071 24.893 28.743 Atomic orbital electron populations 1.21743 0.95332 1.01822 1.01843 1.21427 0.95988 0.95123 1.02768 1.20128 0.85352 0.99011 1.03515 1.22424 0.96981 0.95352 0.88655 1.77144 0.86202 1.26194 1.22337 1.46087 1.07788 1.57677 1.05370 0.71278 1.23139 0.98894 0.98046 0.85488 1.20300 0.92281 1.21578 0.94704 1.17331 0.82048 0.79499 0.83492 1.90822 1.27534 1.41944 1.80000 1.48085 1.37934 1.40173 1.07981 1.21895 0.90436 0.89510 1.00286 1.21976 1.02197 0.95973 0.96486 1.21073 0.98477 0.96035 0.94625 0.90931 1.21893 1.01029 0.95518 1.02174 1.21764 0.98230 0.94424 0.98124 0.90780 1.20705 0.90000 0.95345 0.90420 1.42774 1.29573 1.62385 1.05519 1.19036 1.07743 1.27070 0.83516 0.89277 1.24646 0.98248 1.00259 0.95811 1.69708 1.26720 1.44933 1.17003 0.86625 0.80672 0.79130 0.82742 1.21136 1.21755 1.19617 1.21771 1.02325 0.97883 0.78161 0.92598 0.92968 0.92242 0.90434 0.92340 0.90394 0.89441 0.79715 0.91510 0.89862 0.91493 0.90920 0.93173 0.91466 0.92786 0.94697 0.95582 0.80478 0.93126 0.88352 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 3 C -0.04 -0.48 5.30 -27.88 -0.15 -0.63 16 4 C 0.13 1.63 6.51 -82.02 -0.53 1.09 16 5 N -0.30 -3.29 12.63 33.90 0.43 -2.86 16 6 N -0.46 -3.43 7.29 30.85 0.22 -3.20 16 7 H 0.44 1.57 8.96 -182.72 -1.64 -0.07 16 8 C 0.10 0.75 9.64 -16.56 -0.16 0.59 16 9 C -0.27 -3.23 5.21 -105.07 -0.55 -3.78 16 10 C 0.59 8.68 7.33 -12.52 -0.09 8.59 16 11 O -0.53 -9.97 15.55 5.27 0.08 -9.89 16 12 N -0.61 -7.84 2.98 -173.82 -0.52 -8.36 16 13 C 0.10 0.89 5.48 -3.71 -0.02 0.87 16 14 C -0.13 -1.16 5.36 -26.61 -0.14 -1.30 16 15 C -0.08 -0.93 2.23 -90.58 -0.20 -1.13 16 16 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.15 -1.63 8.82 37.16 0.33 -1.30 16 18 C -0.11 -1.59 1.92 -90.50 -0.17 -1.76 16 19 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 20 C 0.16 3.07 5.41 -4.04 -0.02 3.05 16 21 N -0.76 -18.30 5.18 -59.91 -0.31 -18.61 16 22 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 23 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 25 N -0.94 -30.04 13.97 55.49 0.78 -29.26 16 26 Si 0.88 23.23 27.74 -169.99 -4.71 18.52 16 27 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 29 H -0.27 -6.96 6.52 56.52 0.37 -6.59 16 30 C 0.12 1.86 5.54 -3.56 -0.02 1.84 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.10 7.67 -51.93 -0.40 0.70 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.13 7.85 -51.93 -0.41 0.73 16 38 H 0.19 0.78 7.36 -52.49 -0.39 0.39 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.61 4.82 -51.93 -0.25 0.36 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.04 0.66 6.14 -51.93 -0.32 0.35 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.36 8.83 4.76 -40.82 -0.19 8.63 16 49 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 50 H 0.10 1.90 6.23 -51.93 -0.32 1.58 16 51 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -36.32 397.06 -9.58 -45.90 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -9.75 Total: 5.50 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.78 Total: -3.72 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.60 Total: -62.30 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.32 -9.58 -45.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132941405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.430 kcal (2) G-P(sol) polarization free energy of solvation -36.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds