Wall clock time and date at job start Tue Mar 31 2020 19:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47281 * 2 1 4 4 C 1.50706 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.30440 * 125.98907 * 270.16887 * 4 3 2 6 6 N 1.39932 * 108.89586 * 180.26443 * 5 4 3 7 7 H 0.97005 * 125.75148 * 179.73915 * 6 5 4 8 8 C 1.34256 * 108.49364 * 359.73619 * 6 5 4 9 9 C 1.38048 * 107.41615 * 0.02562 * 8 6 5 10 10 C 1.47428 * 126.41374 * 179.97438 * 9 8 6 11 11 O 1.21606 * 119.99591 * 139.22566 * 10 9 8 12 12 N 1.34771 * 120.00465 * 319.22923 * 10 9 8 13 13 C 1.46925 * 120.62822 * 354.36557 * 12 10 9 14 14 C 1.53187 * 108.89549 * 233.67537 * 13 12 10 15 15 C 1.53039 * 109.31301 * 305.29669 * 14 13 12 16 16 H 1.08999 * 109.46069 * 301.34056 * 15 14 13 17 17 C 1.53005 * 109.45799 * 181.38551 * 15 14 13 18 18 C 1.53036 * 109.53755 * 61.36337 * 15 14 13 19 19 H 1.09002 * 109.49731 * 58.58878 * 18 15 14 20 20 C 1.52999 * 109.49736 * 178.64722 * 18 15 14 21 21 N 1.46500 * 109.47367 * 184.99878 * 20 18 15 22 22 C 1.36930 * 120.00065 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00526 * 0.02562 * 22 21 20 24 24 C 1.38818 * 119.99932 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99961 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 119.99962 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47284 * 89.99546 * 26 24 22 28 28 H 1.48503 * 109.47134 * 209.99549 * 26 24 22 29 29 H 1.48504 * 109.47260 * 329.99718 * 26 24 22 30 30 C 1.47202 * 120.81668 * 174.50733 * 12 10 9 31 31 H 1.08994 * 109.47373 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46671 * 300.00325 * 1 2 3 33 33 H 1.09000 * 109.46566 * 59.99881 * 1 2 3 34 34 H 1.09002 * 109.46671 * 239.99675 * 2 1 3 35 35 H 1.09000 * 109.46566 * 120.00119 * 2 1 3 36 36 H 1.09002 * 109.47533 * 60.00203 * 3 2 1 37 37 H 1.08999 * 109.47041 * 299.99983 * 3 2 1 38 38 H 1.08002 * 126.29210 * 179.97438 * 8 6 5 39 39 H 1.08999 * 109.58579 * 113.81918 * 13 12 10 40 40 H 1.09000 * 109.58838 * 353.53654 * 13 12 10 41 41 H 1.09006 * 109.49559 * 65.24914 * 14 13 12 42 42 H 1.09008 * 109.50002 * 185.34019 * 14 13 12 43 43 H 1.08993 * 109.47405 * 59.99739 * 17 15 14 44 44 H 1.09002 * 109.47030 * 180.02562 * 17 15 14 45 45 H 1.09006 * 109.47018 * 299.99589 * 17 15 14 46 46 H 1.09000 * 109.47632 * 305.00308 * 20 18 15 47 47 H 1.09006 * 109.46966 * 65.00054 * 20 18 15 48 48 H 0.97000 * 119.99564 * 0.02562 * 21 20 18 49 49 H 0.96998 * 119.99543 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.53092 * 6.53803 * 30 12 10 51 51 H 1.08998 * 109.67699 * 246.23198 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3132 1.4394 1.0564 6 7 5.6509 1.4466 0.6457 7 1 6.4237 1.4498 1.2319 8 6 5.6843 1.4483 -0.6965 9 6 4.3778 1.4428 -1.1423 10 6 3.9327 1.4428 -2.5478 11 8 2.9921 0.7510 -2.8877 12 7 4.5682 2.2094 -3.4560 13 6 5.6247 3.1420 -3.0403 14 6 5.2876 4.5403 -3.5672 15 6 5.0729 4.4726 -5.0809 16 1 5.9743 4.0888 -5.5587 17 6 4.7699 5.8737 -5.6159 18 6 3.8968 3.5435 -5.3900 19 1 3.0004 3.9133 -4.8922 20 6 3.6616 3.5029 -6.9012 21 7 2.4638 2.7096 -7.1879 22 6 2.0537 2.5320 -8.4823 23 1 2.6135 2.9765 -9.2920 24 6 0.9191 1.7799 -8.7539 25 7 0.5252 1.6088 -9.9981 26 14 -0.0488 1.0106 -7.3537 27 1 -1.0921 1.9612 -6.8922 28 1 -0.6936 -0.2408 -7.8266 29 1 0.8699 0.6997 -6.2291 30 6 4.2182 2.1338 -4.8838 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6768 1.9562 -0.8900 38 1 6.5704 1.4538 -1.3139 39 1 6.5808 2.8175 -3.4509 40 1 5.6836 3.1659 -1.9521 41 1 4.3781 4.9007 -3.0864 42 1 6.1103 5.2205 -3.3464 43 1 5.6079 6.5354 -5.3969 44 1 4.6165 5.8257 -6.6940 45 1 3.8689 6.2582 -5.1379 46 1 3.5234 4.5174 -7.2749 47 1 4.5234 3.0495 -7.3910 48 1 1.9612 2.3101 -6.4608 49 1 -0.2679 1.0836 -10.1879 50 1 3.3466 1.4920 -5.0118 51 1 5.0580 1.7261 -5.4464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132941405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:01 Heat of formation + Delta-G solvation = 9.168612 kcal Electronic energy + Delta-G solvation = -30131.777863 eV Core-core repulsion = 26259.273466 eV Total energy + Delta-G solvation = -3872.504397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.57044 -40.89422 -38.98943 -36.76576 -36.21095 -35.04320 -33.67572 -32.61722 -32.18850 -31.17147 -29.18745 -28.14518 -27.36617 -25.04640 -24.59300 -23.11986 -22.90157 -22.53108 -21.58171 -20.84722 -20.18811 -19.61576 -18.64294 -17.68196 -16.91980 -16.71993 -16.40506 -16.08087 -15.86236 -15.70437 -15.42188 -15.28779 -15.16073 -14.92014 -14.67107 -14.37484 -14.23843 -14.07126 -13.99693 -13.80603 -13.37763 -13.16540 -13.01608 -12.83104 -12.63817 -12.62753 -12.49127 -12.23818 -12.22781 -12.04956 -11.94122 -11.87511 -11.74608 -11.54443 -11.29220 -11.18970 -11.01340 -10.84829 -10.50791 -9.83544 -9.52489 -9.28021 -8.05798 -5.36719 0.60076 1.08951 1.33463 1.36928 1.44177 1.73788 2.00101 2.26054 2.44090 3.26694 3.38939 3.53569 3.68364 3.81642 3.84040 3.89225 4.04910 4.09028 4.12792 4.15873 4.30375 4.31975 4.37632 4.45045 4.57055 4.58054 4.60970 4.76751 4.77895 4.79396 4.80771 4.86269 4.90108 4.96959 4.99080 5.07459 5.09747 5.14599 5.24158 5.28339 5.29894 5.35669 5.38363 5.47793 5.59649 5.60394 5.74972 6.19691 6.27082 6.44791 6.57456 7.05978 7.25460 7.84168 8.00448 9.15925 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.004062 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.666331 B = 6891.208211 C = 9084.335001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.039 4.039 4 C 0.119 3.881 5 N -0.315 5.315 6 N -0.443 5.443 7 H 0.462 0.538 8 C 0.132 3.868 9 C -0.309 4.309 10 C 0.584 3.416 11 O -0.585 6.585 12 N -0.603 5.603 13 C 0.096 3.904 14 C -0.122 4.122 15 C -0.077 4.077 16 H 0.089 0.911 17 C -0.148 4.148 18 C -0.093 4.093 19 H 0.053 0.947 20 C 0.159 3.841 21 N -0.762 5.762 22 C -0.228 4.228 23 H 0.065 0.935 24 C -0.055 4.055 25 N -0.980 5.980 26 Si 0.941 3.059 27 H -0.279 1.279 28 H -0.292 1.292 29 H -0.266 1.266 30 C 0.125 3.875 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.231 0.769 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.038 0.962 47 H 0.031 0.969 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.051 0.949 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.027 5.080 26.946 32.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.079 4.079 4 C -0.049 4.049 5 N -0.138 5.138 6 N -0.150 5.150 7 H 0.311 0.689 8 C -0.021 4.021 9 C -0.324 4.324 10 C 0.374 3.626 11 O -0.465 6.465 12 N -0.335 5.335 13 C -0.025 4.025 14 C -0.160 4.160 15 C -0.096 4.096 16 H 0.107 0.893 17 C -0.205 4.205 18 C -0.113 4.113 19 H 0.072 0.928 20 C 0.033 3.967 21 N -0.407 5.407 22 C -0.359 4.359 23 H 0.083 0.917 24 C -0.247 4.247 25 N -0.631 5.631 26 Si 0.769 3.231 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.192 1.192 30 C 0.002 3.998 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.194 0.806 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.618 4.757 27.850 33.296 hybrid contribution -0.996 -0.789 -0.728 1.465 sum 16.622 3.968 27.122 32.057 Atomic orbital electron populations 1.21733 0.94560 1.02234 1.01987 1.21334 0.96670 0.95135 1.01519 1.20048 0.86159 0.98633 1.03036 1.22418 0.97067 0.96090 0.89288 1.77085 0.87694 1.26829 1.22179 1.46111 1.07338 1.55744 1.05773 0.68868 1.23636 0.98542 0.94356 0.85594 1.20137 0.94196 1.25207 0.92865 1.17813 0.81287 0.78755 0.84764 1.90789 1.30209 1.44434 1.81079 1.48122 1.38530 1.40443 1.06445 1.22277 0.90164 0.88236 1.01794 1.21965 1.03012 0.96938 0.94101 1.21074 0.96813 0.94908 0.96787 0.89308 1.21875 1.01862 0.95927 1.00808 1.21623 0.99522 0.95421 0.94711 0.92805 1.20931 0.87868 0.94339 0.93591 1.42883 1.31186 1.62965 1.03700 1.19086 1.06765 1.25196 0.84848 0.91693 1.25303 0.99767 1.01733 0.97850 1.69846 1.27628 1.46651 1.18995 0.85622 0.79329 0.78136 0.79982 1.20551 1.21895 1.19179 1.21494 1.00859 0.97084 0.80375 0.92073 0.91044 0.93795 0.93511 0.91507 0.88953 0.91640 0.75260 0.88210 0.87810 0.92981 0.87200 0.90327 0.93292 0.93679 0.94451 0.95104 0.80631 0.93315 0.92993 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 3 C -0.04 -0.95 5.30 29.85 0.16 -0.79 16 4 C 0.12 2.78 6.51 43.52 0.28 3.06 16 5 N -0.31 -6.27 12.63 -46.68 -0.59 -6.86 16 6 N -0.44 -4.73 7.29 -56.31 -0.41 -5.14 16 7 H 0.46 1.07 8.96 -213.42 -1.91 -0.84 16 8 C 0.13 1.48 9.64 84.28 0.81 2.30 16 9 C -0.31 -6.79 5.21 -20.15 -0.10 -6.89 16 10 C 0.58 17.15 7.33 86.66 0.64 17.78 16 11 O -0.58 -23.40 15.55 -4.05 -0.06 -23.46 16 12 N -0.60 -14.63 2.98 -822.10 -2.45 -17.08 16 13 C 0.10 1.25 5.48 86.36 0.47 1.73 16 14 C -0.12 -1.70 5.36 30.67 0.16 -1.54 16 15 C -0.08 -1.49 2.23 -10.77 -0.02 -1.52 16 16 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 17 C -0.15 -2.87 8.82 71.98 0.63 -2.23 16 18 C -0.09 -2.75 1.92 -10.72 -0.02 -2.77 16 19 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 20 C 0.16 6.02 5.41 86.38 0.47 6.49 16 21 N -0.76 -37.71 5.18 -343.44 -1.78 -39.49 16 22 C -0.23 -13.51 10.47 84.04 0.88 -12.63 16 23 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 24 C -0.05 -3.38 5.50 84.86 0.47 -2.92 16 25 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 26 Si 0.94 49.84 27.74 68.60 1.90 51.74 16 27 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 29 H -0.27 -13.79 6.52 99.48 0.65 -13.14 16 30 C 0.12 3.84 5.54 86.31 0.48 4.32 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.43 7.67 -2.39 -0.02 1.41 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.83 7.85 -2.39 -0.02 1.81 16 38 H 0.23 0.41 7.36 -2.91 -0.02 0.39 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.97 4.82 -2.39 -0.01 0.96 16 41 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.05 1.12 6.29 -2.39 -0.02 1.11 16 45 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.04 1.43 6.14 -2.39 -0.01 1.41 16 47 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.36 18.08 4.76 -92.71 -0.44 17.64 16 49 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 50 H 0.05 2.10 6.23 -2.39 -0.01 2.09 16 51 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -85.18 397.06 1.64 -83.55 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -1.47 Total: 21.85 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 6.20 Total: -0.58 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -4.93 Total: -133.11 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.06 Total: -23.46 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.90 Total: 51.74 kcal Total: -85.18 1.64 -83.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132941405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.715 kcal (2) G-P(sol) polarization free energy of solvation -85.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds