Wall clock time and date at job start Tue Mar 31 2020 19:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 C 1.50692 * 109.47410 * 179.97438 * 3 2 1 5 5 C 1.35364 * 126.38796 * 84.99705 * 4 3 2 6 6 C 1.41497 * 105.50560 * 179.97438 * 5 4 3 7 7 C 1.47714 * 126.51886 * 179.97438 * 6 5 4 8 8 O 1.21571 * 119.99803 * 353.65812 * 7 6 5 9 9 N 1.34773 * 120.00097 * 173.65270 * 7 6 5 10 10 C 1.46921 * 120.63185 * 354.82229 * 9 7 6 11 11 C 1.53194 * 108.77721 * 126.41207 * 10 9 7 12 12 C 1.53039 * 109.31184 * 54.63567 * 11 10 9 13 13 H 1.08992 * 109.46286 * 178.61577 * 12 11 10 14 14 C 1.52996 * 109.45066 * 58.65017 * 12 11 10 15 15 C 1.53045 * 109.53893 * 298.63804 * 12 11 10 16 16 H 1.09002 * 109.49269 * 301.41151 * 15 12 11 17 17 C 1.52998 * 109.49779 * 181.35186 * 15 12 11 18 18 N 1.46498 * 109.47105 * 175.06555 * 17 15 12 19 19 C 1.36939 * 119.99752 * 179.97438 * 18 17 15 20 20 H 1.07987 * 120.00117 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99673 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00046 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99996 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.46997 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47312 * 119.99867 * 23 21 19 26 26 H 1.48504 * 109.46856 * 240.00030 * 23 21 19 27 27 C 1.46928 * 120.63082 * 174.84714 * 9 7 6 28 28 N 1.31807 * 106.96734 * 0.24589 * 6 5 4 29 29 N 1.28472 * 110.06644 * 359.59036 * 28 6 5 30 30 H 0.97000 * 124.87885 * 180.13354 * 29 28 6 31 31 H 1.08995 * 109.47190 * 299.99840 * 1 2 3 32 32 H 1.09001 * 109.47116 * 60.00383 * 1 2 3 33 33 H 1.08999 * 109.46648 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47190 * 240.00159 * 2 1 3 35 35 H 1.09001 * 109.47116 * 119.99617 * 2 1 3 36 36 H 1.09008 * 109.46807 * 59.99872 * 3 2 1 37 37 H 1.08999 * 109.47493 * 300.00457 * 3 2 1 38 38 H 1.08000 * 127.24419 * 0.02562 * 5 4 3 39 39 H 1.08996 * 109.58732 * 6.62361 * 10 9 7 40 40 H 1.09005 * 109.70699 * 246.26768 * 10 9 7 41 41 H 1.09000 * 109.49571 * 294.68837 * 11 10 9 42 42 H 1.08999 * 109.52589 * 174.60256 * 11 10 9 43 43 H 1.09007 * 109.47440 * 299.94067 * 14 12 11 44 44 H 1.08998 * 109.47277 * 59.93733 * 14 12 11 45 45 H 1.09003 * 109.47624 * 179.97438 * 14 12 11 46 46 H 1.09003 * 109.46802 * 295.06030 * 17 15 12 47 47 H 1.08997 * 109.47142 * 55.06159 * 17 15 12 48 48 H 0.97004 * 120.00170 * 359.97438 * 18 17 15 49 49 H 0.97001 * 119.99785 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.58888 * 113.79978 * 27 9 7 51 51 H 1.09000 * 109.58742 * 353.37246 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3504 1.3475 -1.0846 6 6 5.6722 1.3923 -0.5816 7 6 6.9170 1.3225 -1.3738 8 8 6.8658 1.1002 -2.5680 9 7 8.1094 1.5055 -0.7729 10 6 8.1829 1.8864 0.6442 11 6 9.0880 0.8905 1.3762 12 6 10.4449 0.8271 0.6712 13 1 11.0993 0.1376 1.2044 14 6 11.0766 2.2205 0.6558 15 6 10.2525 0.3387 -0.7664 16 1 9.7796 -0.6434 -0.7567 17 6 11.6130 0.2434 -1.4598 18 7 11.4413 -0.3350 -2.7948 19 6 12.5286 -0.5176 -3.6069 20 1 13.5126 -0.2348 -3.2634 21 6 12.3660 -1.0662 -4.8716 22 7 11.1667 -1.4112 -5.2900 23 14 13.8491 -1.3146 -5.9797 24 1 15.0732 -0.8485 -5.2802 25 1 13.9851 -2.7562 -6.3089 26 1 13.6679 -0.5359 -7.2312 27 6 9.3605 1.3283 -1.5226 28 7 5.5816 1.5020 0.7287 29 7 4.3475 1.5381 1.0838 30 1 4.0357 1.6179 1.9989 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6765 1.9563 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 4.0465 1.2573 -2.1170 39 1 7.1847 1.8624 1.0812 40 1 8.5970 2.8907 0.7338 41 1 8.6261 -0.0967 1.3656 42 1 9.2285 1.2155 2.4070 43 1 10.4226 2.9101 0.1221 44 1 11.2138 2.5686 1.6795 45 1 12.0433 2.1757 0.1541 46 1 12.0460 1.2398 -1.5485 47 1 12.2769 -0.3903 -0.8718 48 1 10.5573 -0.5886 -3.1034 49 1 11.0530 -1.7942 -6.1739 50 1 9.8719 2.2867 -1.6118 51 1 9.1393 0.9360 -2.5152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133021683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:55 Heat of formation + Delta-G solvation = 43.920621 kcal Electronic energy + Delta-G solvation = -29385.353304 eV Core-core repulsion = 25514.355868 eV Total energy + Delta-G solvation = -3870.997436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.93210 -39.98170 -37.82277 -35.78139 -34.81984 -33.43015 -32.08845 -31.66526 -31.24251 -29.67230 -27.57272 -26.95261 -25.84332 -24.79793 -23.12869 -22.89518 -22.33463 -21.23162 -21.04206 -19.42184 -18.22228 -17.92309 -17.01093 -16.53496 -15.92644 -15.63639 -15.50268 -14.95536 -14.82650 -14.74527 -14.33486 -14.03501 -13.88944 -13.60948 -13.46965 -13.39233 -13.04424 -12.81765 -12.70203 -12.59717 -12.30429 -12.04048 -11.94197 -11.73650 -11.55820 -11.19070 -11.13502 -10.98718 -10.87410 -10.73304 -10.65648 -10.31911 -10.10921 -10.03093 -9.90398 -9.64059 -9.53086 -9.45989 -9.16568 -8.77177 -8.26578 -6.79877 -5.64052 -2.93369 1.45600 1.94759 2.56084 3.23348 3.50920 3.52576 3.55663 3.58560 4.16460 4.31066 4.45639 4.58470 4.67545 4.80942 4.96302 4.98506 5.04575 5.06159 5.15381 5.24379 5.33407 5.36246 5.42875 5.48081 5.55036 5.61821 5.66670 5.71639 5.73083 5.79742 5.81201 5.85024 5.93864 5.94826 6.06299 6.12013 6.15637 6.26381 6.30150 6.45646 6.47290 6.49363 6.69397 6.70774 6.86659 6.94758 7.01614 7.58303 7.77354 7.80535 8.41136 8.53795 9.64645 10.23640 10.57881 11.58388 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.002640 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.579437 B =10604.668989 C =12184.149090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.018 3.982 5 C -0.174 4.174 6 C 0.006 3.994 7 C 0.593 3.407 8 O -0.522 6.522 9 N -0.595 5.595 10 C 0.074 3.926 11 C -0.123 4.123 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.152 4.152 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.121 3.879 28 N -0.261 5.261 29 N -0.386 5.386 30 H 0.441 0.559 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.023 0.977 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.281 8.472 19.670 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.108 4.108 5 C -0.202 4.202 6 C -0.154 4.154 7 C 0.378 3.622 8 O -0.396 6.396 9 N -0.328 5.328 10 C -0.050 4.050 11 C -0.161 4.161 12 C -0.105 4.105 13 H 0.089 0.911 14 C -0.209 4.209 15 C -0.121 4.121 16 H 0.091 0.909 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.001 4.001 28 N -0.096 5.096 29 N -0.099 5.099 30 H 0.285 0.715 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.180 0.820 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.041 0.959 47 H 0.038 0.962 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.464 8.434 19.853 29.054 hybrid contribution 0.046 -0.323 -0.842 0.903 sum -19.418 8.111 19.012 28.360 Atomic orbital electron populations 1.21778 0.95211 1.02098 1.01951 1.21553 0.96011 0.95435 1.03036 1.20228 0.86286 0.98359 1.04018 1.21403 0.94951 1.07094 0.87329 1.21536 0.90399 1.08315 0.99957 1.22085 0.95402 1.08346 0.89597 1.17044 0.81556 0.77416 0.86151 1.90861 1.86064 1.48823 1.13869 1.47957 1.05562 1.67537 1.11725 1.22641 1.04327 0.97411 0.80588 1.21869 0.95686 0.99919 0.98635 1.21092 0.96077 0.97500 0.95839 0.91072 1.21979 1.01352 0.96564 1.00998 1.21681 0.97391 0.98992 0.94025 0.90899 1.20681 0.92501 0.96278 0.87260 1.42437 1.08144 1.75025 1.12170 1.19247 0.88215 1.34210 0.95362 0.91214 1.24760 0.96487 1.02018 0.97804 1.69691 1.20228 1.48518 1.19327 0.86140 0.82009 0.77326 0.80858 1.20644 1.21975 1.21918 1.21771 0.82277 0.99313 0.96704 1.73178 1.00549 1.20896 1.14976 1.43512 1.03250 1.53385 1.09757 0.71479 0.92739 0.92352 0.92386 0.90961 0.91986 0.90682 0.88951 0.81972 0.85124 0.92029 0.91818 0.91284 0.92438 0.93280 0.91895 0.95930 0.96208 0.78108 0.93581 0.91330 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 3 C -0.05 -0.25 5.77 -27.89 -0.16 -0.41 16 4 C 0.02 0.15 6.48 -82.21 -0.53 -0.38 16 5 C -0.17 -2.08 10.73 -39.37 -0.42 -2.50 16 6 C 0.01 0.09 6.88 -82.77 -0.57 -0.48 16 7 C 0.59 10.49 7.70 -12.39 -0.10 10.40 16 8 O -0.52 -11.31 16.37 5.30 0.09 -11.23 16 9 N -0.60 -9.62 2.97 -173.93 -0.52 -10.14 16 10 C 0.07 0.93 5.86 -3.71 -0.02 0.91 16 11 C -0.12 -1.47 5.62 -26.61 -0.15 -1.62 16 12 C -0.09 -1.17 2.71 -90.58 -0.25 -1.42 16 13 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 14 C -0.15 -1.90 8.11 37.16 0.30 -1.59 16 15 C -0.10 -1.78 2.15 -90.50 -0.19 -1.97 16 16 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 17 C 0.16 3.36 5.19 -4.04 -0.02 3.34 16 18 N -0.73 -19.49 5.38 -59.91 -0.32 -19.81 16 19 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -29.53 13.06 55.49 0.72 -28.81 16 23 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 C 0.12 2.21 5.04 -3.71 -0.02 2.19 16 28 N -0.26 -2.96 8.62 33.42 0.29 -2.67 16 29 N -0.39 -3.04 6.83 33.50 0.23 -2.81 16 30 H 0.44 1.76 8.96 -190.44 -1.71 0.06 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.24 8.14 -51.92 -0.42 -0.19 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.13 1.56 3.74 -111.15 -0.42 1.14 16 40 H 0.06 0.73 6.70 -51.93 -0.35 0.38 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.73 4.98 -51.92 -0.26 0.48 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 46 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 10.97 6.90 -40.82 -0.28 10.69 16 49 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 50 H 0.07 1.21 6.69 -51.93 -0.35 0.86 16 51 H 0.10 2.28 6.24 -51.93 -0.32 1.96 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -35.69 395.21 -10.58 -46.27 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -9.84 Total: 7.28 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.17 Total: -2.28 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 0.40 Total: -64.24 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.69 -10.58 -46.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133021683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.192 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds