Wall clock time and date at job start Tue Mar 31 2020 18:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50690 * 109.47401 * 2 1 4 4 C 1.34672 * 126.59203 * 275.04280 * 3 2 1 5 5 N 1.34125 * 108.02363 * 179.74361 * 4 3 2 6 6 C 1.30498 * 109.25473 * 0.36772 * 5 4 3 7 7 C 1.50701 * 125.64785 * 179.89121 * 6 5 4 8 8 C 1.50700 * 109.47356 * 304.69548 * 7 6 5 9 9 O 1.21288 * 119.99973 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99928 * 180.02562 * 8 7 6 11 11 C 1.46921 * 120.62853 * 4.79595 * 10 8 7 12 12 C 1.53193 * 108.76954 * 233.62843 * 11 10 8 13 13 C 1.53038 * 109.31513 * 305.36698 * 12 11 10 14 14 C 1.53039 * 109.53805 * 61.36656 * 13 12 11 15 15 C 1.46926 * 120.62511 * 184.81632 * 10 8 7 16 16 H 1.09003 * 109.58740 * 246.29701 * 15 10 8 17 17 C 1.52998 * 109.59057 * 6.58338 * 15 10 8 18 18 N 1.46503 * 109.46995 * 178.36688 * 17 15 10 19 19 C 1.46506 * 120.00050 * 266.98808 * 18 17 15 20 20 C 1.36932 * 119.99734 * 86.98863 * 18 17 15 21 21 H 1.08000 * 120.00011 * 221.41274 * 20 18 17 22 22 C 1.38815 * 120.00355 * 41.41986 * 20 18 17 23 23 N 1.31618 * 119.99796 * 202.26602 * 22 20 18 24 24 Si 1.86800 * 119.99804 * 22.53620 * 22 20 18 25 25 H 1.48498 * 109.47148 * 265.41263 * 24 22 20 26 26 H 1.48504 * 109.46978 * 25.41633 * 24 22 20 27 27 H 1.48500 * 109.46829 * 145.40962 * 24 22 20 28 28 N 1.35039 * 108.70170 * 359.63348 * 6 5 4 29 29 H 0.96998 * 126.40195 * 180.25019 * 28 6 5 30 30 H 1.08998 * 109.47268 * 60.00298 * 1 2 3 31 31 H 1.09003 * 109.47870 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47100 * 300.00131 * 1 2 3 33 33 H 1.08994 * 109.46744 * 239.99287 * 2 1 3 34 34 H 1.09011 * 109.46888 * 120.00175 * 2 1 3 35 35 H 1.08006 * 125.98793 * 359.97438 * 4 3 2 36 36 H 1.09001 * 109.47074 * 184.69582 * 7 6 5 37 37 H 1.08998 * 109.46837 * 64.69363 * 7 6 5 38 38 H 1.08994 * 109.58916 * 353.41717 * 11 10 8 39 39 H 1.08996 * 109.58503 * 113.84808 * 11 10 8 40 40 H 1.09000 * 109.50214 * 65.32331 * 12 11 10 41 41 H 1.09002 * 109.49618 * 185.41331 * 12 11 10 42 42 H 1.09004 * 109.45698 * 181.38829 * 13 12 11 43 43 H 1.09006 * 109.45860 * 301.35726 * 13 12 11 44 44 H 1.09008 * 109.49594 * 178.68194 * 14 13 12 45 45 H 1.08996 * 109.49384 * 58.58792 * 14 13 12 46 46 H 1.09001 * 109.47337 * 58.36756 * 17 15 10 47 47 H 1.08994 * 109.47199 * 298.36647 * 17 15 10 48 48 H 1.08994 * 109.46599 * 264.89378 * 19 18 17 49 49 H 1.08996 * 109.46894 * 24.89320 * 19 18 17 50 50 H 1.08997 * 109.46824 * 144.89067 * 19 18 17 51 51 H 0.97000 * 119.99577 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2104 2.2093 -1.0771 5 7 2.6643 3.3973 -0.6512 6 6 2.7817 3.3724 0.6483 7 6 3.2634 4.5121 1.5086 8 6 4.6180 4.9659 1.0289 9 8 5.1411 4.4176 0.0819 10 7 5.2488 5.9805 1.6529 11 6 4.6781 6.5844 2.8647 12 6 4.5679 8.0981 2.6561 13 6 5.9372 8.6556 2.2609 14 6 6.3889 8.0184 0.9449 15 6 6.5198 6.5038 1.1340 16 1 7.3197 6.2898 1.8428 17 6 6.8355 5.8445 -0.2101 18 7 8.0833 6.3965 -0.7436 19 6 8.0459 7.5376 -1.6617 20 6 9.2844 5.8458 -0.3843 21 1 10.1266 6.4846 -0.1630 22 6 9.4195 4.4666 -0.3045 23 7 10.3742 3.9405 0.4332 24 14 8.2511 3.3574 -1.2499 25 1 7.1291 2.9520 -0.3657 26 1 7.7153 4.0901 -2.4253 27 1 8.9802 2.1485 -1.7106 28 7 2.3947 2.1582 1.0948 29 1 2.3765 1.8636 2.0188 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.0175 1.9345 -2.1037 36 1 3.3373 4.1796 2.5441 37 1 2.5582 5.3405 1.4424 38 1 3.6879 6.1679 3.0490 39 1 5.3274 6.3792 3.7157 40 1 3.8484 8.3048 1.8637 41 1 4.2362 8.5696 3.5812 42 1 5.8669 9.7362 2.1359 43 1 6.6617 8.4268 3.0425 44 1 7.3535 8.4332 0.6520 45 1 5.6523 8.2258 0.1687 46 1 6.0232 6.0396 -0.9102 47 1 6.9444 4.7690 -0.0705 48 1 8.0717 7.1774 -2.6901 49 1 7.1300 8.1054 -1.4984 50 1 8.9083 8.1788 -1.4794 51 1 10.4684 2.9767 0.4892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158082365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:03 Heat of formation + Delta-G solvation = 56.810719 kcal Electronic energy + Delta-G solvation = -30681.894751 eV Core-core repulsion = 26811.456271 eV Total energy + Delta-G solvation = -3870.438480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.11508 -40.09969 -37.11071 -35.59761 -34.33842 -32.83527 -32.35419 -31.91043 -31.24392 -30.31195 -27.41811 -26.65668 -25.62498 -24.25744 -23.54798 -22.34992 -21.29547 -20.91413 -20.57363 -20.15922 -18.63327 -17.46083 -17.06980 -15.95159 -15.76421 -15.40827 -14.94957 -14.94564 -14.61561 -14.41064 -14.26559 -13.84263 -13.73967 -13.55386 -13.31021 -13.15824 -13.03593 -12.81487 -12.72764 -12.49448 -12.34238 -12.01168 -11.82775 -11.74422 -11.57791 -11.45363 -11.26025 -10.88476 -10.78279 -10.52178 -10.38973 -10.33146 -10.02836 -9.92701 -9.75884 -9.60941 -9.51178 -8.74900 -8.23785 -8.17621 -8.08414 -6.51158 -5.85477 -3.30062 1.97718 2.88254 3.00359 3.19044 3.47168 3.66201 3.76481 3.88621 4.30826 4.61922 4.70269 4.72266 4.77854 4.85514 4.89148 4.97809 5.02493 5.12999 5.24624 5.32669 5.35154 5.38425 5.42056 5.49577 5.53798 5.55726 5.59338 5.60960 5.77255 5.87638 5.88006 5.94357 5.99866 6.16526 6.22424 6.25879 6.39839 6.43636 6.50961 6.59905 6.75175 6.80314 6.89173 6.93095 7.07410 7.33479 7.44634 7.80239 8.20564 8.23987 8.54128 8.63920 9.20886 9.89398 10.33795 11.28702 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.004445 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.926270 B = 6297.899060 C = 8094.124555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.028 4.028 4 C -0.019 4.019 5 N -0.455 5.455 6 C 0.222 3.778 7 C -0.054 4.054 8 C 0.509 3.491 9 O -0.491 6.491 10 N -0.610 5.610 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.121 4.121 15 C 0.129 3.871 16 H 0.077 0.923 17 C 0.147 3.853 18 N -0.613 5.613 19 C 0.121 3.879 20 C -0.273 4.273 21 H 0.073 0.927 22 C 0.042 3.958 23 N -0.903 5.903 24 Si 0.878 3.122 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.311 1.311 28 N -0.564 5.564 29 H 0.414 0.586 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.090 0.910 48 H 0.005 0.995 49 H 0.031 0.969 50 H 0.035 0.965 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.811 0.120 7.825 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.168 4.168 5 N -0.173 5.173 6 C -0.042 4.042 7 C -0.096 4.096 8 C 0.294 3.706 9 O -0.364 6.364 10 N -0.346 5.346 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.158 4.158 14 C -0.159 4.159 15 C 0.025 3.975 16 H 0.095 0.905 17 C 0.022 3.978 18 N -0.339 5.339 19 C -0.025 4.025 20 C -0.402 4.402 21 H 0.091 0.909 22 C -0.159 4.159 23 N -0.544 5.544 24 Si 0.708 3.292 25 H -0.192 1.192 26 H -0.197 1.197 27 H -0.240 1.240 28 N -0.168 5.168 29 H 0.251 0.749 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.024 0.976 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.240 0.366 6.756 22.292 hybrid contribution -0.723 -1.445 0.635 1.736 sum -21.963 -1.078 7.391 23.199 Atomic orbital electron populations 1.21769 0.94559 1.01730 1.02318 1.19960 0.95847 0.89252 1.03419 1.21174 1.09475 0.96277 0.87357 1.22101 1.05703 0.90500 0.98535 1.70247 1.16169 1.23168 1.07745 1.22272 1.03981 0.86783 0.91183 1.20024 0.96810 0.95053 0.97701 1.20058 0.86138 0.80435 0.84009 1.90910 1.64565 1.54040 1.26888 1.48298 1.24198 1.34623 1.27437 1.21701 0.98529 0.93688 0.87779 1.21902 0.98472 0.95166 1.01557 1.21544 0.96227 0.99470 0.98558 1.21931 1.02066 0.95622 0.96269 1.22256 0.82569 0.92985 0.99719 0.90535 1.21909 0.87124 0.98574 0.90205 1.44319 1.03150 1.36155 1.50237 1.21160 0.98210 0.90391 0.92695 1.18709 0.89585 0.89855 1.42027 0.90919 1.25520 0.96063 0.97238 0.97054 1.69904 1.34885 1.11431 1.38215 0.86883 0.80277 0.79471 0.82537 1.19211 1.19750 1.23968 1.43057 1.51723 1.12470 1.09510 0.74907 0.92057 0.92172 0.93013 0.89454 0.91385 0.81647 0.88125 0.86728 0.90512 0.91391 0.91667 0.91284 0.92257 0.91872 0.89912 0.92563 0.93747 0.89297 0.97633 0.95048 0.94671 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.05 -0.39 6.49 -27.89 -0.18 -0.57 16 3 C -0.03 -0.34 6.49 -81.60 -0.53 -0.87 16 4 C -0.02 -0.29 11.79 -17.81 -0.21 -0.50 16 5 N -0.46 -8.11 10.60 -10.81 -0.11 -8.23 16 6 C 0.22 3.28 6.95 -155.42 -1.08 2.20 16 7 C -0.05 -0.66 4.68 -29.03 -0.14 -0.80 16 8 C 0.51 8.94 7.53 -10.98 -0.08 8.86 16 9 O -0.49 -11.37 10.41 5.55 0.06 -11.31 16 10 N -0.61 -9.85 2.97 -165.23 -0.49 -10.34 16 11 C 0.11 1.17 6.35 -3.71 -0.02 1.14 16 12 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 13 C -0.12 -1.51 5.88 -26.69 -0.16 -1.66 16 14 C -0.12 -1.98 4.04 -26.61 -0.11 -2.09 16 15 C 0.13 2.55 3.20 -67.60 -0.22 2.33 16 16 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 17 C 0.15 3.57 2.54 -4.04 -0.01 3.56 16 18 N -0.61 -15.82 2.06 -181.12 -0.37 -16.19 16 19 C 0.12 2.65 9.55 59.85 0.57 3.22 16 20 C -0.27 -8.10 9.88 -15.06 -0.15 -8.25 16 21 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 22 C 0.04 1.30 5.29 -17.43 -0.09 1.21 16 23 N -0.90 -28.92 13.97 55.49 0.78 -28.15 16 24 Si 0.88 25.45 25.24 -169.99 -4.29 21.16 16 25 H -0.27 -7.83 6.02 56.52 0.34 -7.49 16 26 H -0.27 -8.10 7.11 56.52 0.40 -7.70 16 27 H -0.31 -9.02 7.11 56.52 0.40 -8.61 16 28 N -0.56 -6.62 6.15 -6.54 -0.04 -6.66 16 29 H 0.41 3.34 8.96 -40.82 -0.37 2.97 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.17 2.14 8.06 -52.48 -0.42 1.72 16 36 H 0.10 0.85 7.75 -51.93 -0.40 0.45 16 37 H 0.11 1.13 7.89 -51.93 -0.41 0.72 16 38 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.49 6.80 -51.92 -0.35 1.13 16 45 H 0.06 0.92 7.85 -51.93 -0.41 0.52 16 46 H 0.04 1.10 7.14 -51.93 -0.37 0.73 16 47 H 0.09 2.45 1.88 -51.93 -0.10 2.35 16 48 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 49 H 0.03 0.59 6.57 -51.93 -0.34 0.25 16 50 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 51 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -39.19 389.25 -9.40 -48.59 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.59 Total: -0.37 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -2.20 Total: 5.63 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -0.24 Total: -69.57 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.06 Total: -11.31 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.29 Total: 21.16 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.19 -9.40 -48.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158082365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.401 kcal (2) G-P(sol) polarization free energy of solvation -39.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds