Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50690 * 109.47401 * 2 1 4 4 C 1.34672 * 126.59203 * 275.04280 * 3 2 1 5 5 N 1.34125 * 108.02363 * 179.74361 * 4 3 2 6 6 C 1.30498 * 109.25473 * 0.36772 * 5 4 3 7 7 C 1.50701 * 125.64785 * 179.89121 * 6 5 4 8 8 C 1.50700 * 109.47356 * 304.69548 * 7 6 5 9 9 O 1.21288 * 119.99973 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99928 * 180.02562 * 8 7 6 11 11 C 1.46921 * 120.62853 * 4.79595 * 10 8 7 12 12 C 1.53193 * 108.76954 * 233.62843 * 11 10 8 13 13 C 1.53038 * 109.31513 * 305.36698 * 12 11 10 14 14 C 1.53039 * 109.53805 * 61.36656 * 13 12 11 15 15 C 1.46926 * 120.62511 * 184.81632 * 10 8 7 16 16 H 1.09003 * 109.58740 * 246.29701 * 15 10 8 17 17 C 1.52998 * 109.59057 * 6.58338 * 15 10 8 18 18 N 1.46503 * 109.46995 * 178.36688 * 17 15 10 19 19 C 1.46506 * 120.00050 * 266.98808 * 18 17 15 20 20 C 1.36932 * 119.99734 * 86.98863 * 18 17 15 21 21 H 1.08000 * 120.00011 * 221.41274 * 20 18 17 22 22 C 1.38815 * 120.00355 * 41.41986 * 20 18 17 23 23 N 1.31618 * 119.99796 * 202.26602 * 22 20 18 24 24 Si 1.86800 * 119.99804 * 22.53620 * 22 20 18 25 25 H 1.48498 * 109.47148 * 265.41263 * 24 22 20 26 26 H 1.48504 * 109.46978 * 25.41633 * 24 22 20 27 27 H 1.48500 * 109.46829 * 145.40962 * 24 22 20 28 28 N 1.35039 * 108.70170 * 359.63348 * 6 5 4 29 29 H 0.96998 * 126.40195 * 180.25019 * 28 6 5 30 30 H 1.08998 * 109.47268 * 60.00298 * 1 2 3 31 31 H 1.09003 * 109.47870 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47100 * 300.00131 * 1 2 3 33 33 H 1.08994 * 109.46744 * 239.99287 * 2 1 3 34 34 H 1.09011 * 109.46888 * 120.00175 * 2 1 3 35 35 H 1.08006 * 125.98793 * 359.97438 * 4 3 2 36 36 H 1.09001 * 109.47074 * 184.69582 * 7 6 5 37 37 H 1.08998 * 109.46837 * 64.69363 * 7 6 5 38 38 H 1.08994 * 109.58916 * 353.41717 * 11 10 8 39 39 H 1.08996 * 109.58503 * 113.84808 * 11 10 8 40 40 H 1.09000 * 109.50214 * 65.32331 * 12 11 10 41 41 H 1.09002 * 109.49618 * 185.41331 * 12 11 10 42 42 H 1.09004 * 109.45698 * 181.38829 * 13 12 11 43 43 H 1.09006 * 109.45860 * 301.35726 * 13 12 11 44 44 H 1.09008 * 109.49594 * 178.68194 * 14 13 12 45 45 H 1.08996 * 109.49384 * 58.58792 * 14 13 12 46 46 H 1.09001 * 109.47337 * 58.36756 * 17 15 10 47 47 H 1.08994 * 109.47199 * 298.36647 * 17 15 10 48 48 H 1.08994 * 109.46599 * 264.89378 * 19 18 17 49 49 H 1.08996 * 109.46894 * 24.89320 * 19 18 17 50 50 H 1.08997 * 109.46824 * 144.89067 * 19 18 17 51 51 H 0.97000 * 119.99577 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2104 2.2093 -1.0771 5 7 2.6643 3.3973 -0.6512 6 6 2.7817 3.3724 0.6483 7 6 3.2634 4.5121 1.5086 8 6 4.6180 4.9659 1.0289 9 8 5.1411 4.4176 0.0819 10 7 5.2488 5.9805 1.6529 11 6 4.6781 6.5844 2.8647 12 6 4.5679 8.0981 2.6561 13 6 5.9372 8.6556 2.2609 14 6 6.3889 8.0184 0.9449 15 6 6.5198 6.5038 1.1340 16 1 7.3197 6.2898 1.8428 17 6 6.8355 5.8445 -0.2101 18 7 8.0833 6.3965 -0.7436 19 6 8.0459 7.5376 -1.6617 20 6 9.2844 5.8458 -0.3843 21 1 10.1266 6.4846 -0.1630 22 6 9.4195 4.4666 -0.3045 23 7 10.3742 3.9405 0.4332 24 14 8.2511 3.3574 -1.2499 25 1 7.1291 2.9520 -0.3657 26 1 7.7153 4.0901 -2.4253 27 1 8.9802 2.1485 -1.7106 28 7 2.3947 2.1582 1.0948 29 1 2.3765 1.8636 2.0188 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.0175 1.9345 -2.1037 36 1 3.3373 4.1796 2.5441 37 1 2.5582 5.3405 1.4424 38 1 3.6879 6.1679 3.0490 39 1 5.3274 6.3792 3.7157 40 1 3.8484 8.3048 1.8637 41 1 4.2362 8.5696 3.5812 42 1 5.8669 9.7362 2.1359 43 1 6.6617 8.4268 3.0425 44 1 7.3535 8.4332 0.6520 45 1 5.6523 8.2258 0.1687 46 1 6.0232 6.0396 -0.9102 47 1 6.9444 4.7690 -0.0705 48 1 8.0717 7.1774 -2.6901 49 1 7.1300 8.1054 -1.4984 50 1 8.9083 8.1788 -1.4794 51 1 10.4684 2.9767 0.4892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158082365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = 29.353254 kcal Electronic energy + Delta-G solvation = -30683.085396 eV Core-core repulsion = 26811.456271 eV Total energy + Delta-G solvation = -3871.629125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -43.12355 -41.43415 -38.47642 -37.41646 -35.14403 -34.19266 -33.76290 -33.41502 -32.70216 -31.49250 -28.73380 -28.06071 -27.47662 -25.53450 -24.34631 -23.78285 -22.75587 -22.20867 -21.89079 -21.22652 -19.84216 -19.05328 -18.36473 -17.54630 -17.25624 -17.01479 -16.46363 -16.08608 -15.55013 -15.47861 -15.36267 -15.18421 -15.09605 -14.85194 -14.69268 -14.55161 -14.43604 -14.24275 -14.04272 -13.83001 -13.65722 -13.26558 -13.14348 -13.05208 -12.90325 -12.75684 -12.47019 -12.40294 -12.15318 -12.05164 -11.92024 -11.81797 -11.63105 -11.50139 -11.35515 -10.98855 -10.81640 -10.71139 -10.17266 -9.44722 -9.19313 -8.65019 -8.28418 -5.66668 0.99020 1.27076 1.38198 1.50073 1.72687 1.85189 2.17282 2.34130 2.38219 3.01678 3.31976 3.50856 3.73229 3.87612 3.97190 3.98011 4.02906 4.09381 4.12300 4.20981 4.34381 4.41341 4.42430 4.46578 4.54696 4.62158 4.66752 4.69331 4.73389 4.75833 4.87720 4.92194 4.93281 5.02804 5.03823 5.08217 5.11490 5.17869 5.24160 5.30833 5.32530 5.37396 5.38188 5.53386 5.75429 5.78789 5.92149 6.12989 6.46847 6.59754 6.98111 7.18235 7.34911 7.62721 8.07546 8.89830 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.004445 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.926270 B = 6297.899060 C = 8094.124555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.009 4.009 4 C -0.064 4.064 5 N -0.509 5.509 6 C 0.205 3.795 7 C -0.041 4.041 8 C 0.497 3.503 9 O -0.557 6.557 10 N -0.609 5.609 11 C 0.097 3.903 12 C -0.126 4.126 13 C -0.117 4.117 14 C -0.112 4.112 15 C 0.138 3.862 16 H 0.043 0.957 17 C 0.154 3.846 18 N -0.628 5.628 19 C 0.121 3.879 20 C -0.254 4.254 21 H 0.051 0.949 22 C 0.002 3.998 23 N -0.938 5.938 24 Si 0.937 3.063 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.312 1.312 28 N -0.552 5.552 29 H 0.432 0.568 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.033 0.967 47 H 0.059 0.941 48 H -0.001 1.001 49 H 0.061 0.939 50 H 0.044 0.956 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.023 0.806 10.306 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.212 4.212 5 N -0.228 5.228 6 C -0.060 4.060 7 C -0.082 4.082 8 C 0.284 3.716 9 O -0.435 6.435 10 N -0.343 5.343 11 C -0.024 4.024 12 C -0.164 4.164 13 C -0.155 4.155 14 C -0.150 4.150 15 C 0.033 3.967 16 H 0.061 0.939 17 C 0.029 3.971 18 N -0.354 5.354 19 C -0.023 4.023 20 C -0.384 4.384 21 H 0.069 0.931 22 C -0.195 4.195 23 N -0.582 5.582 24 Si 0.769 3.231 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.241 1.241 28 N -0.157 5.157 29 H 0.273 0.727 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.018 0.982 49 H 0.079 0.921 50 H 0.063 0.937 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.502 1.081 9.292 26.227 hybrid contribution 0.251 -1.604 -0.147 1.631 sum -24.251 -0.523 9.145 25.924 Atomic orbital electron populations 1.21719 0.93114 1.02889 1.02048 1.20118 0.96946 0.86861 1.04437 1.21665 1.07033 0.97232 0.86618 1.22382 1.07921 0.90998 0.99854 1.70144 1.17774 1.25005 1.09917 1.22636 1.04211 0.88244 0.90864 1.20113 0.93533 0.95396 0.99178 1.21035 0.87704 0.79702 0.83128 1.90886 1.66555 1.56161 1.29876 1.48367 1.22698 1.34433 1.28823 1.22155 1.00530 0.94390 0.85314 1.21901 0.96699 0.94331 1.03452 1.21535 0.97721 1.00434 0.95775 1.21806 1.01215 0.93088 0.98935 1.21689 0.83922 0.95000 0.96121 0.93907 1.21677 0.85725 0.97237 0.92428 1.44518 1.02501 1.36872 1.51521 1.21245 1.00222 0.89397 0.91437 1.18684 0.90338 0.89472 1.39898 0.93116 1.25876 0.97164 0.98231 0.98248 1.69956 1.36523 1.11655 1.40035 0.85983 0.78373 0.78087 0.80660 1.20440 1.21530 1.24083 1.43007 1.50722 1.11548 1.10432 0.72681 0.92875 0.90284 0.92758 0.89116 0.89674 0.81413 0.83566 0.83591 0.86174 0.90775 0.91296 0.87573 0.90293 0.92358 0.91989 0.92475 0.94836 0.92361 0.98228 0.92073 0.93715 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 71.98 0.71 -0.89 16 2 C -0.05 -0.67 6.49 29.84 0.19 -0.47 16 3 C -0.01 -0.20 6.49 40.95 0.27 0.06 16 4 C -0.06 -1.96 11.79 83.52 0.98 -0.98 16 5 N -0.51 -18.40 10.60 -188.13 -1.99 -20.40 16 6 C 0.21 5.78 6.95 138.13 0.96 6.74 16 7 C -0.04 -0.88 4.68 29.10 0.14 -0.74 16 8 C 0.50 16.95 7.53 87.66 0.66 17.61 16 9 O -0.56 -26.45 10.41 -3.06 -0.03 -26.48 16 10 N -0.61 -18.68 2.97 -795.04 -2.36 -21.04 16 11 C 0.10 1.71 6.35 86.36 0.55 2.26 16 12 C -0.13 -1.96 6.08 30.67 0.19 -1.77 16 13 C -0.12 -2.58 5.88 30.62 0.18 -2.40 16 14 C -0.11 -3.57 4.04 30.67 0.12 -3.44 16 15 C 0.14 5.48 3.20 44.97 0.14 5.63 16 16 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 17 C 0.15 7.68 2.54 86.38 0.22 7.90 16 18 N -0.63 -33.19 2.06 -726.94 -1.50 -34.69 16 19 C 0.12 5.34 9.55 127.77 1.22 6.56 16 20 C -0.25 -15.53 9.88 84.04 0.83 -14.70 16 21 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 22 C 0.00 0.15 5.29 84.86 0.45 0.60 16 23 N -0.94 -61.79 13.97 21.65 0.30 -61.48 16 24 Si 0.94 55.72 25.24 68.60 1.73 57.45 16 25 H -0.28 -16.93 6.02 99.48 0.60 -16.33 16 26 H -0.29 -17.71 7.11 99.48 0.71 -17.01 16 27 H -0.31 -18.24 7.11 99.48 0.71 -17.54 16 28 N -0.55 -11.83 6.15 -174.61 -1.07 -12.90 16 29 H 0.43 5.60 8.96 -92.71 -0.83 4.77 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.17 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.15 1.72 7.75 -2.39 -0.02 1.70 16 37 H 0.15 2.20 7.89 -2.39 -0.02 2.18 16 38 H 0.12 1.11 5.93 -2.39 -0.01 1.10 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 44 H 0.06 2.21 6.80 -2.38 -0.02 2.19 16 45 H 0.06 1.79 7.85 -2.39 -0.02 1.77 16 46 H 0.03 1.72 7.14 -2.39 -0.02 1.70 16 47 H 0.06 3.34 1.88 -2.39 0.00 3.33 16 48 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 49 H 0.06 2.30 6.57 -2.39 -0.02 2.28 16 50 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 51 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -92.74 389.25 2.88 -89.86 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -0.01 Total: 7.71 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 7.81 Total: 21.97 kcal Atomic # 7 Polarization: -143.89 SS G_CDS: -6.62 Total: -150.51 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.03 Total: -26.48 kcal Atomic # 14 Polarization: 55.72 SS G_CDS: 1.73 Total: 57.45 kcal Total: -92.74 2.88 -89.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158082365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.218 kcal (2) G-P(sol) polarization free energy of solvation -92.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds