Wall clock time and date at job start Tue Mar 31 2020 19:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47401 * 2 1 4 4 C 1.50702 * 109.47491 * 120.00143 * 2 1 3 5 5 C 1.35369 * 126.38206 * 324.68750 * 4 2 1 6 6 C 1.41495 * 105.49806 * 179.86510 * 5 4 2 7 7 C 1.47712 * 126.51634 * 180.12940 * 6 5 4 8 8 O 1.21571 * 119.99919 * 0.29706 * 7 6 5 9 9 N 1.34774 * 120.00367 * 180.29799 * 7 6 5 10 10 C 1.46498 * 120.00660 * 174.27455 * 9 7 6 11 11 C 1.52994 * 109.47607 * 184.87609 * 10 9 7 12 12 C 1.53000 * 109.47102 * 178.79528 * 11 10 9 13 13 C 1.52998 * 115.54872 * 40.15993 * 12 11 10 14 14 N 1.46498 * 109.47178 * 65.20050 * 13 12 11 15 15 C 1.36937 * 120.00297 * 185.11343 * 14 13 12 16 16 H 1.08005 * 119.99542 * 4.91486 * 15 14 13 17 17 C 1.38806 * 120.00271 * 184.91414 * 15 14 13 18 18 N 1.31620 * 119.99763 * 183.50429 * 17 15 14 19 19 Si 1.86797 * 120.00315 * 3.50153 * 17 15 14 20 20 H 1.48501 * 109.47183 * 91.19524 * 19 17 15 21 21 H 1.48496 * 109.47390 * 211.20096 * 19 17 15 22 22 H 1.48504 * 109.46869 * 331.20149 * 19 17 15 23 23 C 1.52998 * 117.50209 * 254.45060 * 12 11 10 24 24 C 1.52998 * 60.00015 * 252.51486 * 23 12 11 25 25 N 1.31806 * 106.96853 * 0.40013 * 6 5 4 26 26 N 1.28463 * 110.07136 * 359.74847 * 25 6 5 27 27 C 1.46501 * 124.88650 * 180.02562 * 26 25 6 28 28 H 1.09008 * 109.46516 * 300.00346 * 1 2 3 29 29 H 1.08994 * 109.47116 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47080 * 59.99710 * 1 2 3 31 31 H 1.08999 * 109.46656 * 240.00233 * 2 1 3 32 32 H 1.08998 * 109.47402 * 59.99781 * 3 2 1 33 33 H 1.09002 * 109.47325 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47240 * 300.00192 * 3 2 1 35 35 H 1.07992 * 127.24657 * 359.96168 * 5 4 2 36 36 H 0.97006 * 119.99758 * 354.27184 * 9 7 6 37 37 H 1.09004 * 109.46835 * 304.88025 * 10 9 7 38 38 H 1.09004 * 109.46874 * 64.87092 * 10 9 7 39 39 H 1.08999 * 109.47473 * 298.80044 * 11 10 9 40 40 H 1.09007 * 109.46664 * 58.80050 * 11 10 9 41 41 H 1.09005 * 109.47090 * 185.20258 * 13 12 11 42 42 H 1.08996 * 109.47264 * 305.19815 * 13 12 11 43 43 H 0.97004 * 120.00313 * 5.12160 * 14 13 12 44 44 H 0.97008 * 119.99864 * 179.97438 * 18 17 15 45 45 H 1.09003 * 117.49792 * 359.97438 * 23 12 11 46 46 H 1.08999 * 117.50191 * 145.02045 * 23 12 11 47 47 H 1.09009 * 117.49405 * 252.51053 * 24 23 12 48 48 H 1.08999 * 117.50096 * 107.49384 * 24 23 12 49 49 H 1.09007 * 109.46749 * 269.96039 * 27 26 25 50 50 H 1.09001 * 109.47314 * 29.95694 * 27 26 25 51 51 H 1.08998 * 109.47502 * 149.96338 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4617 -0.6917 2.4578 6 6 2.2887 -1.5013 3.2718 7 6 2.0892 -1.8010 4.7043 8 8 1.1332 -1.3372 5.2949 9 7 2.9670 -2.5885 5.3568 10 6 2.8411 -2.7845 6.8031 11 6 4.0220 -3.6146 7.3101 12 6 3.9063 -3.7938 8.8252 13 6 2.4938 -4.0532 9.3529 14 7 2.0130 -5.3418 8.8486 15 6 0.7282 -5.7408 9.1040 16 1 0.0454 -5.0728 9.6080 17 6 0.3034 -7.0038 8.7151 18 7 -0.9499 -7.3619 8.8983 19 14 1.5102 -8.1951 7.9317 20 1 2.1367 -9.0308 8.9874 21 1 0.7901 -9.0689 6.9709 22 1 2.5632 -7.4326 7.2141 23 6 4.8515 -2.9761 9.7076 24 6 5.0672 -4.4821 9.5458 25 7 3.2743 -1.9325 2.5101 26 7 3.1390 -1.4796 1.3156 27 6 4.0533 -1.7580 0.2054 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 0.5634 -0.1700 2.7530 36 1 3.6823 -3.0256 4.8686 37 1 2.8372 -1.8154 7.3021 38 1 1.9097 -3.3080 7.0190 39 1 4.0136 -4.5916 6.8269 40 1 4.9544 -3.1011 7.0752 41 1 2.5110 -4.0730 10.4427 42 1 1.8280 -3.2593 9.0145 43 1 2.6048 -5.9126 8.3338 44 1 -1.2469 -8.2444 8.6262 45 1 5.5562 -2.3107 9.2088 46 1 4.4672 -2.6226 10.6644 47 1 4.8247 -5.1195 10.3962 48 1 5.9134 -4.8073 8.9406 49 1 4.8358 -0.9996 0.1802 50 1 4.5042 -2.7407 0.3436 51 1 3.5004 -1.7408 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164501704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:06 Heat of formation + Delta-G solvation = 68.810584 kcal Electronic energy + Delta-G solvation = -28638.829913 eV Core-core repulsion = 24768.911787 eV Total energy + Delta-G solvation = -3869.918127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.90628 -39.30683 -38.24829 -36.15130 -34.68232 -33.99446 -33.70907 -31.08564 -30.33754 -29.68302 -27.65588 -27.58398 -26.16846 -24.19181 -23.02559 -22.52872 -22.07845 -21.74787 -20.55920 -19.65959 -18.66925 -17.66452 -17.28416 -16.56072 -16.48593 -15.77256 -15.27863 -15.00886 -14.93989 -14.46164 -14.40902 -14.09973 -14.06235 -13.77741 -13.55299 -13.40709 -13.16573 -12.93916 -12.86884 -12.56078 -12.55634 -12.31369 -12.02270 -11.81297 -11.64838 -11.52216 -11.38033 -11.30080 -11.07065 -10.93236 -10.85441 -10.67203 -10.14280 -9.93825 -9.79485 -9.53510 -9.39743 -9.28794 -9.10048 -8.80517 -8.75726 -7.12648 -5.68622 -3.03183 1.51008 1.97846 2.21185 3.31069 3.41722 3.45456 3.50027 3.54340 3.99568 4.05595 4.13023 4.37684 4.58881 4.66186 4.70396 4.71220 4.85050 4.94126 4.98471 5.00190 5.10638 5.15309 5.22900 5.30205 5.34622 5.38009 5.44631 5.52490 5.60550 5.60779 5.66008 5.74727 5.78777 5.79776 5.84186 5.94470 5.95083 6.13414 6.24294 6.30295 6.35731 6.39164 6.48641 6.53840 6.63454 6.76083 6.81104 7.56619 7.84876 8.09851 8.39382 8.50950 9.31042 10.02979 10.24181 11.50037 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.002622 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.442188 B =10676.093587 C =11655.000967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 C -0.144 4.144 4 C 0.014 3.986 5 C -0.172 4.172 6 C -0.009 4.009 7 C 0.600 3.400 8 O -0.527 6.527 9 N -0.716 5.716 10 C 0.118 3.882 11 C -0.085 4.085 12 C -0.126 4.126 13 C 0.188 3.812 14 N -0.751 5.751 15 C -0.239 4.239 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.886 3.114 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.279 1.279 23 C -0.171 4.171 24 C -0.171 4.171 25 N -0.264 5.264 26 N -0.283 5.283 27 C 0.085 3.915 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.161 0.839 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.039 0.961 43 H 0.362 0.638 44 H 0.258 0.742 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.916 16.728 -20.653 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.200 4.200 6 C -0.169 4.169 7 C 0.384 3.616 8 O -0.401 6.401 9 N -0.367 5.367 10 C -0.005 4.005 11 C -0.123 4.123 12 C -0.127 4.127 13 C 0.061 3.939 14 N -0.397 5.397 15 C -0.369 4.369 16 H 0.107 0.893 17 C -0.192 4.192 18 N -0.583 5.583 19 Si 0.717 3.283 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.205 1.205 23 C -0.209 4.209 24 C -0.208 4.208 25 N -0.100 5.100 26 N -0.071 5.071 27 C -0.055 4.055 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.179 0.821 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.195 0.805 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.047 16.382 -20.167 29.536 hybrid contribution 0.566 -0.848 -0.905 1.364 sum 14.613 15.534 -21.072 29.981 Atomic orbital electron populations 1.21842 0.92900 1.02788 1.02714 1.19669 0.96910 0.95360 0.92337 1.21852 1.00941 0.94606 1.02769 1.21354 0.91051 1.00410 0.98152 1.21473 1.03000 1.04514 0.91003 1.21965 0.95818 1.03730 0.95359 1.16853 0.82369 0.78883 0.83499 1.90824 1.29329 1.52738 1.67218 1.45845 1.32027 1.49118 1.09728 1.21552 1.00461 1.00323 0.78136 1.21181 0.97263 1.00229 0.93608 1.21650 0.93700 1.04760 0.92612 1.20229 0.88787 0.89087 0.95754 1.42678 1.12701 1.18978 1.65313 1.19065 0.86881 0.98623 1.32300 0.89260 1.24671 0.95968 0.97333 1.01230 1.69714 1.14532 1.20652 1.53392 0.86523 0.80922 0.81794 0.79093 1.21247 1.21938 1.20507 1.23024 1.02396 0.93997 1.01479 1.22962 0.99567 0.95049 1.03208 1.73512 1.23927 1.21004 0.91563 1.45259 1.19342 1.34730 1.07741 1.22139 0.92928 1.04263 0.86181 0.91582 0.92035 0.91757 0.90279 0.91737 0.92803 0.91694 0.82131 0.76363 0.91346 0.89042 0.91004 0.91879 0.95750 0.94300 0.80471 0.93180 0.89179 0.88745 0.88467 0.89348 0.89799 0.88443 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.79 37.16 0.33 -0.58 16 2 C -0.02 -0.14 3.09 -91.77 -0.28 -0.43 16 3 C -0.14 -0.77 9.18 37.16 0.34 -0.43 16 4 C 0.01 0.14 5.84 -82.21 -0.48 -0.34 16 5 C -0.17 -2.19 9.96 -39.36 -0.39 -2.59 16 6 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 7 C 0.60 10.32 7.82 -12.39 -0.10 10.23 16 8 O -0.53 -10.86 16.94 5.30 0.09 -10.77 16 9 N -0.72 -11.02 5.55 -61.29 -0.34 -11.35 16 10 C 0.12 1.93 4.80 -4.05 -0.02 1.91 16 11 C -0.09 -1.23 5.37 -26.73 -0.14 -1.37 16 12 C -0.13 -1.97 1.83 -154.51 -0.28 -2.25 16 13 C 0.19 3.76 5.32 -4.04 -0.02 3.73 16 14 N -0.75 -18.17 5.29 -59.91 -0.32 -18.48 16 15 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 16 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 18 N -0.93 -30.25 13.97 55.49 0.78 -29.48 16 19 Si 0.89 22.84 27.90 -169.99 -4.74 18.10 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.28 -6.71 6.30 56.52 0.36 -6.35 16 23 C -0.17 -2.20 9.87 -26.73 -0.26 -2.46 16 24 C -0.17 -2.39 9.97 -26.73 -0.27 -2.66 16 25 N -0.26 -3.42 11.68 33.42 0.39 -3.03 16 26 N -0.28 -2.80 3.70 -63.85 -0.24 -3.04 16 27 C 0.09 0.42 11.11 59.85 0.66 1.09 16 28 H 0.07 0.45 7.36 -51.92 -0.38 0.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.36 6.86 -51.93 -0.36 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.16 1.96 7.48 -52.49 -0.39 1.56 16 36 H 0.40 5.33 8.22 -40.82 -0.34 5.00 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.85 6.85 -51.93 -0.36 1.50 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.76 7.95 -51.93 -0.41 0.35 16 41 H 0.02 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.04 0.81 6.69 -51.93 -0.35 0.46 16 43 H 0.36 8.61 5.46 -40.82 -0.22 8.39 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 45 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.10 1.45 8.14 -51.92 -0.42 1.03 16 48 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 50 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.09 0.24 6.88 -51.93 -0.36 -0.11 16 LS Contribution 415.55 15.07 6.26 6.26 Total: -1.00 -36.59 415.55 -8.56 -45.15 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.68 Total: 10.62 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.76 Total: -3.97 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 0.27 Total: -65.38 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.74 Total: 18.10 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.59 -8.56 -45.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164501704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.957 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds