Wall clock time and date at job start Tue Mar 31 2020 19:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47401 * 2 1 4 4 C 1.50702 * 109.47491 * 120.00143 * 2 1 3 5 5 C 1.35369 * 126.38206 * 324.68750 * 4 2 1 6 6 C 1.41495 * 105.49806 * 179.86510 * 5 4 2 7 7 C 1.47712 * 126.51634 * 180.12940 * 6 5 4 8 8 O 1.21571 * 119.99919 * 0.29706 * 7 6 5 9 9 N 1.34774 * 120.00367 * 180.29799 * 7 6 5 10 10 C 1.46498 * 120.00660 * 174.27455 * 9 7 6 11 11 C 1.52994 * 109.47607 * 184.87609 * 10 9 7 12 12 C 1.53000 * 109.47102 * 178.79528 * 11 10 9 13 13 C 1.52998 * 115.54872 * 40.15993 * 12 11 10 14 14 N 1.46498 * 109.47178 * 65.20050 * 13 12 11 15 15 C 1.36937 * 120.00297 * 185.11343 * 14 13 12 16 16 H 1.08005 * 119.99542 * 4.91486 * 15 14 13 17 17 C 1.38806 * 120.00271 * 184.91414 * 15 14 13 18 18 N 1.31620 * 119.99763 * 183.50429 * 17 15 14 19 19 Si 1.86797 * 120.00315 * 3.50153 * 17 15 14 20 20 H 1.48501 * 109.47183 * 91.19524 * 19 17 15 21 21 H 1.48496 * 109.47390 * 211.20096 * 19 17 15 22 22 H 1.48504 * 109.46869 * 331.20149 * 19 17 15 23 23 C 1.52998 * 117.50209 * 254.45060 * 12 11 10 24 24 C 1.52998 * 60.00015 * 252.51486 * 23 12 11 25 25 N 1.31806 * 106.96853 * 0.40013 * 6 5 4 26 26 N 1.28463 * 110.07136 * 359.74847 * 25 6 5 27 27 C 1.46501 * 124.88650 * 180.02562 * 26 25 6 28 28 H 1.09008 * 109.46516 * 300.00346 * 1 2 3 29 29 H 1.08994 * 109.47116 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47080 * 59.99710 * 1 2 3 31 31 H 1.08999 * 109.46656 * 240.00233 * 2 1 3 32 32 H 1.08998 * 109.47402 * 59.99781 * 3 2 1 33 33 H 1.09002 * 109.47325 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47240 * 300.00192 * 3 2 1 35 35 H 1.07992 * 127.24657 * 359.96168 * 5 4 2 36 36 H 0.97006 * 119.99758 * 354.27184 * 9 7 6 37 37 H 1.09004 * 109.46835 * 304.88025 * 10 9 7 38 38 H 1.09004 * 109.46874 * 64.87092 * 10 9 7 39 39 H 1.08999 * 109.47473 * 298.80044 * 11 10 9 40 40 H 1.09007 * 109.46664 * 58.80050 * 11 10 9 41 41 H 1.09005 * 109.47090 * 185.20258 * 13 12 11 42 42 H 1.08996 * 109.47264 * 305.19815 * 13 12 11 43 43 H 0.97004 * 120.00313 * 5.12160 * 14 13 12 44 44 H 0.97008 * 119.99864 * 179.97438 * 18 17 15 45 45 H 1.09003 * 117.49792 * 359.97438 * 23 12 11 46 46 H 1.08999 * 117.50191 * 145.02045 * 23 12 11 47 47 H 1.09009 * 117.49405 * 252.51053 * 24 23 12 48 48 H 1.08999 * 117.50096 * 107.49384 * 24 23 12 49 49 H 1.09007 * 109.46749 * 269.96039 * 27 26 25 50 50 H 1.09001 * 109.47314 * 29.95694 * 27 26 25 51 51 H 1.08998 * 109.47502 * 149.96338 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4617 -0.6917 2.4578 6 6 2.2887 -1.5013 3.2718 7 6 2.0892 -1.8010 4.7043 8 8 1.1332 -1.3372 5.2949 9 7 2.9670 -2.5885 5.3568 10 6 2.8411 -2.7845 6.8031 11 6 4.0220 -3.6146 7.3101 12 6 3.9063 -3.7938 8.8252 13 6 2.4938 -4.0532 9.3529 14 7 2.0130 -5.3418 8.8486 15 6 0.7282 -5.7408 9.1040 16 1 0.0454 -5.0728 9.6080 17 6 0.3034 -7.0038 8.7151 18 7 -0.9499 -7.3619 8.8983 19 14 1.5102 -8.1951 7.9317 20 1 2.1367 -9.0308 8.9874 21 1 0.7901 -9.0689 6.9709 22 1 2.5632 -7.4326 7.2141 23 6 4.8515 -2.9761 9.7076 24 6 5.0672 -4.4821 9.5458 25 7 3.2743 -1.9325 2.5101 26 7 3.1390 -1.4796 1.3156 27 6 4.0533 -1.7580 0.2054 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 0.5634 -0.1700 2.7530 36 1 3.6823 -3.0256 4.8686 37 1 2.8372 -1.8154 7.3021 38 1 1.9097 -3.3080 7.0190 39 1 4.0136 -4.5916 6.8269 40 1 4.9544 -3.1011 7.0752 41 1 2.5110 -4.0730 10.4427 42 1 1.8280 -3.2593 9.0145 43 1 2.6048 -5.9126 8.3338 44 1 -1.2469 -8.2444 8.6262 45 1 5.5562 -2.3107 9.2088 46 1 4.4672 -2.6226 10.6644 47 1 4.8247 -5.1195 10.3962 48 1 5.9134 -4.8073 8.9406 49 1 4.8358 -0.9996 0.1802 50 1 4.5042 -2.7407 0.3436 51 1 3.5004 -1.7408 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164501704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:03 Heat of formation + Delta-G solvation = 42.972390 kcal Electronic energy + Delta-G solvation = -28639.950341 eV Core-core repulsion = 24768.911787 eV Total energy + Delta-G solvation = -3871.038555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.77950 -40.63763 -39.55042 -36.73188 -36.11891 -35.89504 -34.48420 -33.23260 -31.51418 -30.57442 -28.47730 -28.03772 -27.95317 -25.26429 -24.27994 -23.75828 -23.32896 -22.99285 -21.57183 -20.72967 -20.24579 -19.14608 -18.41734 -17.53823 -17.39383 -17.01280 -16.64946 -16.54666 -16.27190 -15.63249 -15.41163 -15.26925 -15.17483 -14.80759 -14.75777 -14.64762 -14.26105 -14.02092 -13.97833 -13.56923 -13.43795 -13.41861 -13.08503 -13.00515 -12.87642 -12.64927 -12.60029 -12.24052 -12.20673 -12.12823 -11.93303 -11.84691 -11.80631 -11.78535 -11.35846 -11.09023 -10.95510 -10.58322 -10.32280 -9.98560 -9.96260 -9.27723 -8.03517 -5.36157 0.45958 1.06724 1.33346 1.39299 1.45974 1.51455 2.12296 2.30422 2.47075 2.84266 3.25441 3.27136 3.48306 3.69919 3.75016 3.81843 3.92527 4.01681 4.05332 4.12070 4.17475 4.31440 4.37223 4.41711 4.46192 4.46532 4.58270 4.60305 4.66560 4.70636 4.81580 4.85362 4.93691 4.97656 4.98223 4.99132 5.08702 5.12121 5.13705 5.20822 5.25559 5.29987 5.35851 5.36938 5.39719 5.42003 5.74992 5.82246 6.20882 6.39497 6.85741 7.08097 7.12139 7.84205 8.06339 9.18698 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.002622 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.442188 B =10676.093587 C =11655.000967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.032 3.968 5 C -0.200 4.200 6 C -0.042 4.042 7 C 0.595 3.405 8 O -0.576 6.576 9 N -0.705 5.705 10 C 0.125 3.875 11 C -0.072 4.072 12 C -0.149 4.149 13 C 0.187 3.813 14 N -0.748 5.748 15 C -0.232 4.232 16 H 0.049 0.951 17 C -0.067 4.067 18 N -0.986 5.986 19 Si 0.960 3.040 20 H -0.276 1.276 21 H -0.297 1.297 22 H -0.250 1.250 23 C -0.146 4.146 24 C -0.163 4.163 25 N -0.269 5.269 26 N -0.273 5.273 27 C 0.070 3.930 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.368 0.632 44 H 0.257 0.743 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.113 0.887 49 H 0.106 0.894 50 H 0.103 0.897 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.188 17.131 -23.816 34.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.093 4.093 5 C -0.228 4.228 6 C -0.200 4.200 7 C 0.380 3.620 8 O -0.454 6.454 9 N -0.356 5.356 10 C 0.002 3.998 11 C -0.110 4.110 12 C -0.150 4.150 13 C 0.061 3.939 14 N -0.394 5.394 15 C -0.363 4.363 16 H 0.067 0.933 17 C -0.258 4.258 18 N -0.637 5.637 19 Si 0.787 3.213 20 H -0.202 1.202 21 H -0.224 1.224 22 H -0.175 1.175 23 C -0.184 4.184 24 C -0.200 4.200 25 N -0.107 5.107 26 N -0.061 5.061 27 C -0.068 4.068 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.202 0.798 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.132 0.868 49 H 0.124 0.876 50 H 0.122 0.878 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.402 16.802 -23.335 34.139 hybrid contribution -0.809 -0.852 0.042 1.176 sum 17.593 15.950 -23.293 33.264 Atomic orbital electron populations 1.21863 0.93131 1.02226 1.03191 1.19856 0.96666 0.95871 0.91499 1.21840 1.01274 0.93734 1.03050 1.21811 0.90138 0.99117 0.98275 1.21582 1.03441 1.05420 0.92397 1.21666 0.97790 1.06056 0.94489 1.17304 0.81734 0.78280 0.84656 1.90780 1.31313 1.54715 1.68623 1.45746 1.31910 1.48549 1.09362 1.21346 0.99546 1.00029 0.78865 1.21114 0.97561 0.99776 0.92526 1.21449 0.91454 1.08447 0.93648 1.20283 0.91739 0.86538 0.95354 1.42597 1.10904 1.20482 1.65385 1.19016 0.88407 0.97981 1.30867 0.93317 1.25562 0.98029 0.99520 1.02716 1.69913 1.17082 1.21235 1.55482 0.85329 0.78817 0.78927 0.78224 1.20210 1.22374 1.17453 1.23144 1.00633 0.93893 1.00708 1.23044 0.98753 0.95764 1.02474 1.73430 1.23297 1.21239 0.92692 1.45795 1.19540 1.33115 1.07668 1.22671 0.93205 1.05423 0.85485 0.92955 0.93128 0.89493 0.87266 0.93378 0.92232 0.89556 0.83000 0.74893 0.91580 0.93796 0.91601 0.88149 0.96222 0.96052 0.79844 0.93387 0.86281 0.88659 0.89673 0.86847 0.87611 0.87798 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.79 71.98 0.63 -0.99 16 2 C -0.02 -0.19 3.09 -11.54 -0.04 -0.22 16 3 C -0.14 -1.14 9.18 71.98 0.66 -0.48 16 4 C 0.03 0.58 5.84 41.40 0.24 0.82 16 5 C -0.20 -5.30 9.96 22.41 0.22 -5.07 16 6 C -0.04 -1.28 7.13 42.46 0.30 -0.98 16 7 C 0.59 21.58 7.82 86.75 0.68 22.26 16 8 O -0.58 -25.71 16.94 -3.94 -0.07 -25.77 16 9 N -0.70 -22.06 5.55 -466.11 -2.58 -24.65 16 10 C 0.13 4.21 4.80 86.38 0.41 4.62 16 11 C -0.07 -1.95 5.37 30.59 0.16 -1.78 16 12 C -0.15 -4.40 1.83 -52.18 -0.10 -4.49 16 13 C 0.19 7.63 5.32 86.38 0.46 8.09 16 14 N -0.75 -36.83 5.29 -343.46 -1.82 -38.64 16 15 C -0.23 -14.08 10.47 84.03 0.88 -13.20 16 16 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 17 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 18 N -0.99 -66.48 13.97 21.65 0.30 -66.17 16 19 Si 0.96 47.61 27.90 68.60 1.91 49.53 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 22 H -0.25 -11.06 6.30 99.48 0.63 -10.44 16 23 C -0.15 -3.27 9.87 30.59 0.30 -2.97 16 24 C -0.16 -4.03 9.97 30.59 0.31 -3.73 16 25 N -0.27 -6.70 11.68 -48.18 -0.56 -7.27 16 26 N -0.27 -4.81 3.70 -355.91 -1.32 -6.12 16 27 C 0.07 0.42 11.11 127.77 1.42 1.84 16 28 H 0.05 0.72 7.36 -2.38 -0.02 0.70 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.11 0.48 6.86 -2.39 -0.02 0.46 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.15 4.10 7.48 -2.91 -0.02 4.07 16 36 H 0.41 10.69 8.22 -92.70 -0.76 9.93 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.90 6.85 -2.38 -0.02 1.88 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.10 2.00 7.95 -2.38 -0.02 1.99 16 41 H 0.02 0.82 8.09 -2.38 -0.02 0.81 16 42 H 0.02 0.95 6.69 -2.39 -0.02 0.93 16 43 H 0.37 17.17 5.46 -92.70 -0.51 16.66 16 44 H 0.26 16.44 8.31 -92.70 -0.77 15.67 16 45 H 0.12 2.05 8.09 -2.39 -0.02 2.03 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 48 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 50 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.12 0.02 6.88 -2.39 -0.02 0.00 16 Total: -1.00 -86.29 415.55 2.47 -83.81 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.42 Total: 35.28 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 7.02 Total: 0.01 kcal Atomic # 7 Polarization: -136.87 SS G_CDS: -5.98 Total: -142.85 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.07 Total: -25.77 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.91 Total: 49.53 kcal Total: -86.29 2.47 -83.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164501704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.787 kcal (2) G-P(sol) polarization free energy of solvation -86.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds