Wall clock time and date at job start Tue Mar 31 2020 19:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 C 1.50694 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.38041 * 126.29564 * 269.99658 * 4 3 2 6 6 C 1.47429 * 126.41351 * 359.97029 * 5 4 3 7 7 O 1.21597 * 119.99811 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99806 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99718 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46815 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46912 * 175.45809 * 10 9 8 12 12 C 1.53008 * 115.54903 * 279.32338 * 11 10 9 13 13 N 1.46503 * 109.46927 * 294.95195 * 12 11 10 14 14 C 1.36926 * 120.00189 * 174.36966 * 13 12 11 15 15 H 1.08001 * 120.00202 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00292 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00017 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00388 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46966 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47389 * 119.99687 * 18 16 14 21 21 H 1.48501 * 109.47218 * 240.00334 * 18 16 14 22 22 C 1.52991 * 117.50369 * 133.61445 * 11 10 9 23 23 C 1.52999 * 60.00187 * 252.50621 * 22 11 10 24 24 C 1.41293 * 107.17412 * 179.97438 * 5 4 3 25 25 N 1.30454 * 108.02149 * 0.02562 * 24 5 4 26 26 N 1.34261 * 126.29077 * 89.68985 * 4 3 2 27 27 C 1.46509 * 125.75073 * 0.03300 * 26 4 3 28 28 H 1.08994 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47610 * 300.00079 * 1 2 3 30 30 H 1.09006 * 109.46860 * 60.00189 * 1 2 3 31 31 H 1.08997 * 109.47610 * 239.99921 * 2 1 3 32 32 H 1.08999 * 109.47069 * 119.99509 * 2 1 3 33 33 H 1.09007 * 109.47005 * 59.99645 * 3 2 1 34 34 H 1.08994 * 109.47077 * 300.00063 * 3 2 1 35 35 H 0.96995 * 120.00524 * 359.97438 * 8 6 5 36 36 H 1.09003 * 109.47072 * 299.99744 * 9 8 6 37 37 H 1.09001 * 109.47296 * 60.00157 * 9 8 6 38 38 H 1.09001 * 109.46838 * 295.45137 * 10 9 8 39 39 H 1.08994 * 109.47600 * 55.45690 * 10 9 8 40 40 H 1.09003 * 109.47013 * 54.94584 * 12 11 10 41 41 H 1.08997 * 109.47209 * 174.95015 * 12 11 10 42 42 H 0.97008 * 119.99925 * 354.37274 * 13 12 11 43 43 H 0.96997 * 120.00344 * 180.02562 * 17 16 14 44 44 H 1.09002 * 117.49868 * 359.97438 * 22 11 10 45 45 H 1.09001 * 117.50650 * 145.01701 * 22 11 10 46 46 H 1.08996 * 117.50014 * 252.50613 * 23 22 11 47 47 H 1.09000 * 117.49950 * 107.48429 * 23 22 11 48 48 H 1.08001 * 125.99179 * 180.02562 * 24 5 4 49 49 H 1.09002 * 109.47101 * 90.00214 * 27 26 4 50 50 H 1.08995 * 109.47111 * 209.99667 * 27 26 4 51 51 H 1.08997 * 109.47226 * 329.99902 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.3636 1.4428 1.1136 6 6 3.9248 1.4437 2.5210 7 8 2.7385 1.4448 2.7880 8 7 4.8386 1.4433 3.5117 9 6 4.4025 1.4436 4.9104 10 6 5.6280 1.4437 5.8266 11 6 5.1753 1.5583 7.2836 12 6 4.8314 2.9715 7.7586 13 7 6.0388 3.8011 7.7375 14 6 5.9546 5.1398 8.0126 15 1 4.9981 5.5843 8.2447 16 6 7.0987 5.9257 7.9932 17 7 8.2644 5.3841 7.7098 18 14 6.9840 7.7518 8.3691 19 1 5.5713 8.1109 8.6535 20 1 7.8233 8.0673 9.5529 21 1 7.4659 8.5293 7.1993 22 6 5.8127 0.6071 8.2983 23 6 4.3604 0.4004 7.8634 24 6 5.6988 1.4421 0.6513 25 7 5.6743 1.4420 -0.6530 26 7 4.3421 1.4365 -1.0812 27 6 3.8909 1.4295 -2.4751 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 5.7849 1.4420 3.2988 36 1 3.8043 2.3340 5.1042 37 1 3.8034 0.5539 5.1044 38 1 6.1833 0.5157 5.6906 39 1 6.2680 2.2900 5.5773 40 1 4.0814 3.4048 7.0968 41 1 4.4382 2.9279 8.7742 42 1 6.8979 3.4019 7.5286 43 1 9.0639 5.9332 7.6966 44 1 6.5542 -0.1007 7.9279 45 1 5.9874 0.9880 9.3046 46 1 3.5797 0.6454 8.5835 47 1 4.1468 -0.4430 7.2069 48 1 6.5844 1.4417 1.2694 49 1 3.7796 2.4554 -2.8261 50 1 4.6255 0.9121 -3.0921 51 1 2.9321 0.9157 -2.5440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165961897.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:11 Heat of formation + Delta-G solvation = 54.922968 kcal Electronic energy + Delta-G solvation = -28594.082960 eV Core-core repulsion = 24723.562621 eV Total energy + Delta-G solvation = -3870.520339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.69820 -39.17384 -38.10681 -35.62926 -34.57471 -33.87216 -33.54186 -30.97027 -30.73066 -29.94234 -27.39768 -26.77262 -25.88763 -23.69989 -22.73427 -22.40743 -22.00429 -21.66491 -20.51145 -19.83371 -18.50400 -17.57187 -17.00329 -16.07659 -15.98860 -15.75318 -15.35929 -15.14353 -14.89115 -14.76690 -14.39684 -14.16344 -13.85008 -13.61582 -13.49367 -13.22641 -13.08228 -12.96400 -12.85030 -12.62193 -12.49229 -12.18759 -11.82741 -11.74735 -11.57054 -11.39040 -11.20064 -11.07555 -10.91832 -10.82443 -10.81845 -10.52708 -10.08969 -9.86470 -9.75175 -9.64176 -9.58533 -9.27650 -8.99447 -8.82215 -8.64663 -6.86091 -5.72772 -3.00220 1.34209 2.04030 2.08050 3.37863 3.45930 3.51596 3.51938 3.53858 4.11261 4.16635 4.20946 4.57160 4.64869 4.69936 4.73848 4.78652 4.95669 4.98514 5.04077 5.07861 5.13646 5.20559 5.23040 5.30932 5.39418 5.44174 5.53380 5.58597 5.61807 5.69260 5.75013 5.81697 5.85174 5.96189 6.00539 6.01770 6.20537 6.22665 6.27414 6.28834 6.48886 6.51002 6.56638 6.59451 6.67520 6.81527 6.89713 7.32851 7.69644 7.74767 8.41437 8.46512 9.58205 10.16945 10.52713 11.50207 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.002522 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.529721 B =11099.621059 C =12225.934606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.066 4.066 4 C 0.159 3.841 5 C -0.293 4.293 6 C 0.594 3.406 7 O -0.549 6.549 8 N -0.723 5.723 9 C 0.129 3.871 10 C -0.092 4.092 11 C -0.118 4.118 12 C 0.188 3.812 13 N -0.727 5.727 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.165 4.165 23 C -0.178 4.178 24 C 0.084 3.916 25 N -0.299 5.299 26 N -0.364 5.364 27 C 0.096 3.904 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.016 0.984 42 H 0.385 0.615 43 H 0.253 0.747 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.191 0.809 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 -14.584 -18.875 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.105 4.105 4 C 0.027 3.973 5 C -0.308 4.308 6 C 0.381 3.619 7 O -0.429 6.429 8 N -0.374 5.374 9 C 0.006 3.994 10 C -0.129 4.129 11 C -0.119 4.119 12 C 0.060 3.940 13 N -0.371 5.371 14 C -0.366 4.366 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.202 4.202 23 C -0.215 4.215 24 C -0.104 4.104 25 N -0.118 5.118 26 N -0.144 5.144 27 C -0.045 4.045 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.218 0.782 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.208 0.792 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.187 -14.409 -19.862 26.968 hybrid contribution 0.555 0.996 0.731 1.354 sum -10.632 -13.413 -19.130 25.669 Atomic orbital electron populations 1.21741 0.94944 1.01881 1.02158 1.21386 0.96331 0.94916 1.02298 1.20570 0.85735 0.99182 1.05008 1.21515 0.94584 0.94983 0.86249 1.20044 0.92808 1.24200 0.93717 1.17139 0.85487 0.75675 0.83554 1.90718 1.16450 1.51389 1.84301 1.45788 1.09607 1.75589 1.06398 1.21325 0.97195 1.02354 0.78562 1.21259 0.96819 1.02774 0.92077 1.21560 1.04080 0.93026 0.93228 1.20185 0.90722 0.86409 0.96678 1.42298 1.04661 1.05657 1.84513 1.19279 0.93661 0.84759 1.38931 0.91241 1.24710 0.95461 0.98007 1.02884 1.69668 0.97840 1.34700 1.56039 0.86144 0.77171 0.85622 0.77453 1.20592 1.21948 1.21942 1.22961 0.95131 1.02094 1.00057 1.22968 0.94814 0.99949 1.03784 1.24071 0.97341 0.96944 0.91995 1.77194 0.95929 1.25347 1.13324 1.48344 1.04110 1.55598 1.06304 1.21957 1.01265 1.03850 0.77465 0.92533 0.91919 0.92884 0.92717 0.90911 0.86794 0.90839 0.76781 0.91002 0.91823 0.91992 0.89446 0.95521 0.96613 0.78157 0.93670 0.89348 0.88653 0.88996 0.89255 0.79249 0.90288 0.88833 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.11 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.07 -0.61 4.67 -27.88 -0.13 -0.74 16 4 C 0.16 1.78 6.26 -81.60 -0.51 1.27 16 5 C -0.29 -3.71 6.13 -105.07 -0.64 -4.35 16 6 C 0.59 8.52 7.81 -12.52 -0.10 8.42 16 7 O -0.55 -9.19 14.84 5.28 0.08 -9.11 16 8 N -0.72 -9.44 5.55 -61.38 -0.34 -9.78 16 9 C 0.13 1.83 5.51 -4.04 -0.02 1.81 16 10 C -0.09 -1.33 5.24 -26.73 -0.14 -1.47 16 11 C -0.12 -1.89 1.52 -154.51 -0.23 -2.12 16 12 C 0.19 3.82 6.10 -4.04 -0.02 3.79 16 13 N -0.73 -18.26 5.30 -59.90 -0.32 -18.58 16 14 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 18 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 22 C -0.17 -2.44 9.90 -26.74 -0.26 -2.71 16 23 C -0.18 -2.39 9.57 -26.73 -0.26 -2.64 16 24 C 0.08 0.96 11.50 -16.98 -0.20 0.77 16 25 N -0.30 -3.62 12.50 30.86 0.39 -3.23 16 26 N -0.36 -3.73 3.98 -63.34 -0.25 -3.98 16 27 C 0.10 0.54 11.06 59.85 0.66 1.20 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 1.31 6.50 -51.92 -0.34 0.97 16 34 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16 35 H 0.40 4.31 7.43 -40.82 -0.30 4.00 16 36 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 37 H 0.06 0.88 7.80 -51.93 -0.41 0.48 16 38 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 39 H 0.09 1.49 7.64 -51.93 -0.40 1.09 16 40 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 41 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 42 H 0.38 10.11 7.46 -40.82 -0.30 9.81 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.06 7.98 -51.93 -0.41 0.65 16 48 H 0.19 1.61 7.50 -52.49 -0.39 1.21 16 49 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.09 0.32 7.63 -51.93 -0.40 -0.08 16 LS Contribution 419.22 15.07 6.32 6.32 Total: -1.00 -34.44 419.22 -9.07 -43.52 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.75 Total: 10.50 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -1.89 Total: -5.83 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.20 Total: -63.02 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.44 -9.07 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165961897.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.439 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds