Wall clock time and date at job start Tue Mar 31 2020 20:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46860 * 2 1 4 4 C 1.50704 * 109.47069 * 119.99778 * 2 1 3 5 5 N 1.30505 * 125.64988 * 300.02314 * 4 2 1 6 6 C 1.34125 * 109.25460 * 179.73398 * 5 4 2 7 7 C 1.34675 * 108.02067 * 0.40172 * 6 5 4 8 8 N 1.35042 * 125.64963 * 120.00245 * 4 2 1 9 9 C 1.46494 * 126.39592 * 0.02562 * 8 4 2 10 10 C 1.50701 * 109.47070 * 85.02706 * 9 8 4 11 11 O 1.21277 * 120.00123 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00008 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00212 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47178 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46816 * 175.45889 * 14 13 12 16 16 C 1.53002 * 115.54832 * 279.32036 * 15 14 13 17 17 N 1.46504 * 109.47033 * 294.95389 * 16 15 14 18 18 C 1.36940 * 119.99778 * 174.37179 * 17 16 15 19 19 H 1.08001 * 120.00126 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99786 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00039 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46987 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47489 * 119.99458 * 22 20 18 25 25 H 1.48500 * 109.47140 * 239.99778 * 22 20 18 26 26 C 1.52998 * 117.50181 * 133.61681 * 15 14 13 27 27 C 1.53003 * 60.00116 * 252.50448 * 26 15 14 28 28 H 1.08998 * 109.47378 * 299.99941 * 1 2 3 29 29 H 1.09004 * 109.47406 * 60.00532 * 1 2 3 30 30 H 1.08999 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46933 * 239.99780 * 2 1 3 32 32 H 1.09007 * 109.46860 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47170 * 299.99725 * 3 2 1 34 34 H 1.09000 * 109.47527 * 60.00143 * 3 2 1 35 35 H 1.08001 * 125.98800 * 180.24815 * 6 5 4 36 36 H 1.07992 * 126.59048 * 179.87766 * 7 6 5 37 37 H 1.09004 * 109.46847 * 205.02232 * 9 8 4 38 38 H 1.08999 * 109.47482 * 325.02522 * 9 8 4 39 39 H 0.97006 * 120.00221 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.46756 * 299.99896 * 13 12 10 41 41 H 1.08999 * 109.47058 * 59.99870 * 13 12 10 42 42 H 1.09004 * 109.46907 * 295.44968 * 14 13 12 43 43 H 1.08995 * 109.47090 * 55.45759 * 14 13 12 44 44 H 1.09001 * 109.47456 * 54.95133 * 16 15 14 45 45 H 1.09001 * 109.47207 * 174.95214 * 16 15 14 46 46 H 0.96993 * 120.00064 * 354.37101 * 17 16 15 47 47 H 0.96998 * 119.99214 * 180.02562 * 21 20 18 48 48 H 1.09004 * 117.49854 * 359.97438 * 26 15 14 49 49 H 1.08998 * 117.50277 * 145.01800 * 26 15 14 50 50 H 1.09000 * 117.49636 * 252.51135 * 27 26 15 51 51 H 1.09000 * 117.49984 * 107.48372 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7856 -0.3622 2.4638 6 6 2.3883 -1.2244 3.2959 7 6 3.0403 -2.1366 2.5499 8 7 2.8120 -1.8129 1.2397 9 6 3.3189 -2.5288 0.0664 10 6 4.5915 -1.8765 -0.4090 11 8 5.0314 -0.9086 0.1744 12 7 5.2408 -2.3687 -1.4827 13 6 6.4782 -1.7350 -1.9445 14 6 7.0075 -2.4826 -3.1700 15 6 8.2357 -1.7547 -3.7202 16 6 7.9424 -0.5382 -4.6005 17 7 7.2599 -0.9724 -5.8220 18 6 6.7926 -0.0430 -6.7125 19 1 6.9267 1.0102 -6.5141 20 6 6.1455 -0.4544 -7.8696 21 7 5.9816 -1.7379 -8.1110 22 14 5.5073 0.8134 -9.0840 23 1 5.8152 2.1772 -8.5833 24 1 6.1614 0.6100 -10.4016 25 1 4.0376 0.6610 -9.2321 26 6 9.4609 -2.6016 -4.0703 27 6 9.4814 -1.7012 -2.8335 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.3582 -1.1913 4.3750 36 1 3.6266 -2.9666 2.9153 37 1 3.5201 -3.5665 0.3328 38 1 2.5745 -2.4958 -0.7291 39 1 4.8887 -3.1427 -1.9496 40 1 6.2773 -0.6973 -2.2112 41 1 7.2223 -1.7681 -1.1488 42 1 7.2843 -3.4976 -2.8848 43 1 6.2331 -2.5187 -3.9361 44 1 7.3050 0.1588 -4.0565 45 1 8.8785 -0.0454 -4.8629 46 1 7.1392 -1.9182 -6.0000 47 1 5.5297 -2.0253 -8.9198 48 1 9.3921 -3.6774 -3.9082 49 1 10.0582 -2.2923 -4.9279 50 1 10.0921 -0.7994 -2.8776 51 1 9.4259 -2.1845 -1.8580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167351994.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:15 Heat of formation + Delta-G solvation = 27.905650 kcal Electronic energy + Delta-G solvation = -28847.581229 eV Core-core repulsion = 24975.889332 eV Total energy + Delta-G solvation = -3871.691898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.16281 -40.75854 -39.52975 -36.30883 -36.18329 -35.75337 -35.00653 -32.78145 -31.50586 -29.81419 -28.65177 -28.08730 -27.73219 -24.73213 -24.56071 -23.81750 -23.03306 -22.34594 -21.83719 -20.30637 -19.87738 -19.05910 -18.42316 -18.28920 -17.04281 -16.78473 -16.69796 -16.26683 -15.96857 -15.80893 -15.63081 -15.26062 -15.17818 -14.88648 -14.63766 -14.58038 -14.35476 -14.18472 -13.85266 -13.83644 -13.36906 -13.18582 -13.05207 -13.02018 -12.82092 -12.56621 -12.43847 -12.28910 -12.16949 -12.12111 -11.94397 -11.93436 -11.85327 -11.46446 -11.10091 -10.93085 -10.91286 -10.63540 -10.44527 -10.18265 -9.27199 -8.97451 -7.95187 -5.22368 0.98243 1.42954 1.46574 1.47486 1.56937 1.67341 2.19796 2.23717 2.53954 2.88713 3.37993 3.39071 3.56614 3.69767 3.76140 3.83227 3.84974 3.96854 4.05619 4.08478 4.10944 4.16501 4.24358 4.32778 4.39909 4.47794 4.58814 4.63343 4.71649 4.75576 4.82774 4.86672 4.91559 4.92083 4.96196 5.02829 5.07234 5.15841 5.23590 5.26381 5.28979 5.32877 5.36397 5.38621 5.39865 5.49404 5.86890 6.14887 6.27673 6.44865 7.10146 7.17210 7.35237 8.10432 8.37166 9.27986 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.002771 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.708246 B =10103.718215 C =12016.480059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 C -0.134 4.134 4 C 0.212 3.788 5 N -0.522 5.522 6 C -0.057 4.057 7 C -0.048 4.048 8 N -0.445 5.445 9 C 0.083 3.917 10 C 0.492 3.508 11 O -0.573 6.573 12 N -0.709 5.709 13 C 0.136 3.864 14 C -0.076 4.076 15 C -0.139 4.139 16 C 0.188 3.812 17 N -0.734 5.734 18 C -0.245 4.245 19 H 0.067 0.933 20 C -0.068 4.068 21 N -0.963 5.963 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.293 1.293 25 H -0.291 1.291 26 C -0.163 4.163 27 C -0.153 4.153 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.184 0.816 36 H 0.205 0.795 37 H 0.167 0.833 38 H 0.147 0.853 39 H 0.419 0.581 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.016 0.984 45 H 0.009 0.991 46 H 0.378 0.622 47 H 0.251 0.749 48 H 0.110 0.890 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 -7.817 19.389 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.031 4.031 3 C -0.192 4.192 4 C -0.051 4.051 5 N -0.241 5.241 6 C -0.203 4.203 7 C -0.180 4.180 8 N -0.127 5.127 9 C -0.043 4.043 10 C 0.278 3.722 11 O -0.451 6.451 12 N -0.362 5.362 13 C 0.012 3.988 14 C -0.114 4.114 15 C -0.140 4.140 16 C 0.061 3.939 17 N -0.376 5.376 18 C -0.377 4.377 19 H 0.085 0.915 20 C -0.261 4.261 21 N -0.614 5.614 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.218 1.218 26 C -0.200 4.200 27 C -0.191 4.191 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.201 0.799 36 H 0.221 0.779 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.027 0.973 46 H 0.210 0.790 47 H 0.060 0.940 48 H 0.129 0.871 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.380 -6.356 19.892 21.564 hybrid contribution 0.294 -0.372 -1.403 1.481 sum -5.086 -6.728 18.489 20.322 Atomic orbital electron populations 1.21726 0.91712 1.02560 1.02934 1.19631 0.97543 0.95383 0.90558 1.21696 0.99803 0.94937 1.02767 1.23436 0.96998 0.88909 0.95733 1.70118 1.26012 1.27943 1.00004 1.22670 1.02249 0.94894 1.00502 1.23152 1.07162 1.05367 0.82279 1.45030 1.37832 1.23065 1.06785 1.22000 0.94517 0.98704 0.89030 1.21249 0.86395 0.84089 0.80483 1.90785 1.68502 1.28398 1.57459 1.45842 1.26018 1.34143 1.30225 1.21143 0.85407 0.96210 0.96036 1.21101 0.95976 0.98712 0.95576 1.21422 0.90595 0.99377 1.02579 1.20220 0.93950 0.93609 0.86077 1.42409 1.68515 1.05821 1.20882 1.19598 1.28670 0.89672 0.99715 0.91452 1.25434 1.02612 0.97749 1.00321 1.69795 1.49399 1.14388 1.27804 0.85178 0.77480 0.78819 0.78918 1.19642 1.22031 1.21753 1.23011 0.99759 0.98200 0.99048 1.23051 0.98593 1.01984 0.95440 0.92554 0.90268 0.92052 0.89647 0.94961 0.90332 0.92374 0.79909 0.77861 0.81604 0.83580 0.74367 0.94197 0.91214 0.88881 0.91896 0.96602 0.97290 0.78979 0.93959 0.87134 0.90328 0.88923 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.17 71.98 0.66 -1.66 16 2 C -0.01 -0.24 3.25 -11.54 -0.04 -0.27 16 3 C -0.13 -3.25 9.17 71.98 0.66 -2.59 16 4 C 0.21 5.30 6.40 138.13 0.88 6.19 16 5 N -0.52 -14.77 11.25 -188.12 -2.12 -16.89 16 6 C -0.06 -1.32 11.87 83.53 0.99 -0.33 16 7 C -0.05 -0.91 11.58 83.09 0.96 0.05 16 8 N -0.44 -9.06 2.24 -518.35 -1.16 -10.23 16 9 C 0.08 1.08 6.17 85.63 0.53 1.61 16 10 C 0.49 10.49 7.90 87.66 0.69 11.18 16 11 O -0.57 -18.54 16.42 -3.02 -0.05 -18.59 16 12 N -0.71 -13.10 5.56 -463.06 -2.57 -15.67 16 13 C 0.14 3.30 5.51 86.38 0.48 3.77 16 14 C -0.08 -1.87 5.24 30.59 0.16 -1.71 16 15 C -0.14 -4.04 1.52 -52.18 -0.08 -4.12 16 16 C 0.19 7.44 6.10 86.38 0.53 7.97 16 17 N -0.73 -36.07 5.30 -343.43 -1.82 -37.89 16 18 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 19 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 20 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 21 N -0.96 -56.87 13.06 21.65 0.28 -56.59 16 22 Si 0.97 45.52 29.55 68.60 2.03 47.54 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 26 C -0.16 -4.25 9.90 30.59 0.30 -3.95 16 27 C -0.15 -3.54 9.57 30.60 0.29 -3.25 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.65 6.85 -2.39 -0.02 1.63 16 32 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.17 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.15 1.23 7.28 -2.39 -0.02 1.22 16 39 H 0.42 4.94 8.47 -92.70 -0.79 4.16 16 40 H 0.04 1.25 7.69 -2.38 -0.02 1.23 16 41 H 0.07 1.65 7.80 -2.39 -0.02 1.63 16 42 H 0.09 1.75 7.94 -2.39 -0.02 1.74 16 43 H 0.06 1.90 7.64 -2.39 -0.02 1.88 16 44 H 0.02 0.66 7.69 -2.39 -0.02 0.65 16 45 H 0.01 0.38 8.09 -2.39 -0.02 0.36 16 46 H 0.38 19.40 7.46 -92.71 -0.69 18.71 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.59 16 48 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 49 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.11 2.11 7.98 -2.39 -0.02 2.10 16 Total: -1.00 -78.53 422.03 2.36 -76.17 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.56 Total: 35.30 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 8.33 Total: -3.16 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -7.39 Total: -137.26 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -78.53 2.36 -76.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167351994.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.072 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds