Wall clock time and date at job start Tue Mar 31 2020 20:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34947 * 126.03930 * 2 1 4 4 C 1.35320 * 107.74855 * 180.14584 * 3 2 1 5 5 C 1.50697 * 126.04143 * 179.87175 * 4 3 2 6 6 C 1.52994 * 109.46992 * 173.95150 * 5 4 3 7 7 C 1.53001 * 109.46743 * 53.95567 * 5 4 3 8 8 C 1.50698 * 109.47386 * 293.95684 * 5 4 3 9 9 O 1.21283 * 120.00188 * 353.78548 * 8 5 4 10 10 N 1.34779 * 120.00045 * 173.79245 * 8 5 4 11 11 C 1.46497 * 119.99921 * 180.02562 * 10 8 5 12 12 C 1.53001 * 109.46958 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47141 * 182.35747 * 12 11 10 14 14 C 1.53002 * 115.55517 * 279.05278 * 13 12 11 15 15 N 1.46504 * 109.46453 * 295.02035 * 14 13 12 16 16 C 1.36937 * 119.99461 * 182.55857 * 15 14 13 17 17 H 1.07998 * 120.00103 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99825 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99801 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00031 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47056 * 90.00042 * 20 18 16 22 22 H 1.48497 * 109.47246 * 210.00345 * 20 18 16 23 23 H 1.48503 * 109.47537 * 330.00662 * 20 18 16 24 24 C 1.53002 * 117.50018 * 133.33796 * 13 12 11 25 25 C 1.52995 * 60.00052 * 252.51232 * 24 13 12 26 26 C 1.39873 * 107.91670 * 359.61853 * 4 3 2 27 27 N 1.30839 * 108.20370 * 0.23533 * 26 4 3 28 28 H 1.08998 * 109.46972 * 270.31055 * 1 2 3 29 29 H 1.08998 * 109.47088 * 30.30462 * 1 2 3 30 30 H 1.08998 * 109.47231 * 150.30321 * 1 2 3 31 31 H 1.08001 * 126.12627 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.47403 * 180.02562 * 6 5 4 33 33 H 1.09006 * 109.47292 * 60.00537 * 6 5 4 34 34 H 1.09000 * 109.47576 * 300.00545 * 6 5 4 35 35 H 1.09005 * 109.46741 * 179.97438 * 7 5 4 36 36 H 1.09004 * 109.47233 * 299.99807 * 7 5 4 37 37 H 1.09000 * 109.46981 * 59.99972 * 7 5 4 38 38 H 0.97001 * 119.99706 * 359.97438 * 10 8 5 39 39 H 1.09005 * 109.47019 * 299.99197 * 11 10 8 40 40 H 1.08995 * 109.47360 * 59.99172 * 11 10 8 41 41 H 1.08998 * 109.47263 * 302.35920 * 12 11 10 42 42 H 1.09001 * 109.46886 * 62.36217 * 12 11 10 43 43 H 1.08997 * 109.46781 * 55.01293 * 14 13 12 44 44 H 1.08994 * 109.47732 * 175.02078 * 14 13 12 45 45 H 0.96998 * 120.00088 * 2.56003 * 15 14 13 46 46 H 0.97007 * 119.99557 * 179.97438 * 19 18 16 47 47 H 1.09003 * 117.49635 * 0.02562 * 24 13 12 48 48 H 1.08998 * 117.49568 * 145.02068 * 24 13 12 49 49 H 1.09007 * 117.50151 * 252.50354 * 25 24 13 50 50 H 1.09004 * 117.49691 * 107.48973 * 25 24 13 51 51 H 1.08002 * 125.89668 * 180.25887 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 6.0191 0.6773 0.1419 7 6 4.6906 2.5328 1.1588 8 6 4.8362 2.3060 -1.3063 9 8 4.0411 2.0684 -2.1907 10 7 5.7809 3.2505 -1.4853 11 6 5.8468 3.9905 -2.7480 12 6 6.9994 4.9950 -2.6907 13 6 7.0317 5.8085 -3.9862 14 6 7.7063 5.1256 -5.1776 15 7 9.1297 4.9338 -4.8888 16 6 9.9527 4.3856 -5.8360 17 1 9.5525 4.0949 -6.7961 18 6 11.3015 4.2043 -5.5626 19 7 11.7893 4.5590 -4.3927 20 14 12.4241 3.4558 -6.8544 21 1 12.9951 4.5352 -7.6994 22 1 13.5244 2.7162 -6.1855 23 1 11.6450 2.5209 -7.7055 24 6 7.1811 7.3262 -3.8638 25 6 5.8384 6.7206 -4.2775 26 6 3.5346 -0.7322 0.0035 27 7 2.2891 -1.1328 0.0055 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8872 -0.5185 30 1 -0.3633 -0.8927 -0.5091 31 1 1.9282 2.1193 0.0004 32 1 6.9047 1.3129 0.1395 33 1 6.0743 -0.0264 -0.6888 34 1 5.9698 0.1270 1.0815 35 1 5.5764 3.1681 1.1562 36 1 3.7992 3.1512 1.0526 37 1 4.6413 1.9825 2.0984 38 1 6.4167 3.4407 -0.7778 39 1 6.0125 3.2933 -3.5694 40 1 4.9089 4.5226 -2.9066 41 1 6.8550 5.6659 -1.8439 42 1 7.9420 4.4602 -2.5740 43 1 7.2378 4.1575 -5.3545 44 1 7.5964 5.7499 -6.0643 45 1 9.4891 5.1952 -4.0266 46 1 12.7318 4.4320 -4.2015 47 1 7.2567 7.7452 -2.8603 48 1 7.7603 7.8385 -4.6320 49 1 5.5341 6.8345 -5.3180 50 1 5.0303 6.7412 -3.5463 51 1 4.4054 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167588015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:25 Heat of formation + Delta-G solvation = 68.641129 kcal Electronic energy + Delta-G solvation = -28835.325860 eV Core-core repulsion = 24965.400385 eV Total energy + Delta-G solvation = -3869.925475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57114 -39.74508 -38.26602 -35.59468 -34.76754 -33.89112 -33.04057 -30.76289 -30.12689 -29.43996 -27.69460 -26.59062 -25.97070 -24.26386 -22.96135 -22.69768 -21.78848 -21.10233 -20.89916 -19.51310 -18.37087 -17.31864 -17.05087 -16.56917 -15.92629 -15.52600 -15.50318 -15.01216 -14.57054 -14.48653 -14.33324 -14.09032 -13.99202 -13.62532 -13.19964 -13.11812 -12.95602 -12.85736 -12.64508 -12.56456 -12.40267 -12.33124 -12.25942 -11.89426 -11.64131 -11.41862 -11.24657 -11.08088 -10.94045 -10.82824 -10.70584 -10.54293 -10.12975 -9.89824 -9.70050 -9.57500 -9.52701 -9.29346 -8.92434 -8.81868 -8.51688 -6.87973 -5.74470 -3.01964 1.76287 2.35464 2.59848 2.75660 3.36859 3.45200 3.50639 3.52120 4.08081 4.23458 4.57707 4.60296 4.63306 4.72344 4.84452 4.85659 4.91781 5.04910 5.07949 5.10270 5.15053 5.19304 5.33386 5.36869 5.46365 5.51712 5.55267 5.59412 5.62523 5.71846 5.77001 5.80252 5.84354 5.90725 5.92338 6.09321 6.18836 6.22604 6.24142 6.44475 6.47749 6.48607 6.53788 6.59875 6.79346 6.83270 6.86540 7.55111 7.60475 7.72648 8.33838 8.44901 9.56508 10.14899 10.50743 11.48459 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002389 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.403991 B =11718.577922 C =12676.617187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.079 3.921 4 C -0.211 4.211 5 C 0.000 4.000 6 C -0.141 4.141 7 C -0.138 4.138 8 C 0.519 3.481 9 O -0.535 6.535 10 N -0.727 5.727 11 C 0.125 3.875 12 C -0.091 4.091 13 C -0.118 4.118 14 C 0.188 3.812 15 N -0.727 5.727 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.164 4.164 25 C -0.178 4.178 26 C 0.060 3.940 27 N -0.301 5.301 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.456 -2.899 15.107 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.067 4.067 4 C -0.223 4.223 5 C -0.005 4.005 6 C -0.199 4.199 7 C -0.195 4.195 8 C 0.304 3.696 9 O -0.410 6.410 10 N -0.378 5.378 11 C 0.002 3.998 12 C -0.128 4.128 13 C -0.119 4.119 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.201 4.201 25 C -0.216 4.216 26 C -0.126 4.126 27 N -0.123 5.123 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.107 0.893 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.950 -4.166 14.289 26.520 hybrid contribution 1.655 0.604 -0.225 1.776 sum -20.295 -3.562 14.063 24.947 Atomic orbital electron populations 1.21824 0.74388 1.04536 1.03088 1.48366 1.06508 1.03855 1.57265 1.22112 0.90810 0.93057 1.00718 1.19370 0.92948 0.93325 1.16609 1.18999 0.93979 0.94360 0.93163 1.21866 0.95135 0.99917 1.02957 1.21901 1.02257 0.98173 0.97185 1.20519 0.80533 0.79464 0.89039 1.90694 1.40712 1.65676 1.43966 1.46063 1.34070 1.39100 1.18602 1.21344 0.98647 0.94116 0.85697 1.21252 0.99067 0.96928 0.95596 1.21555 1.01357 0.91670 0.97338 1.20179 0.85875 0.95992 0.91946 1.42289 1.02376 1.75188 1.17299 1.19234 0.89806 1.32511 0.95210 0.91295 1.24712 0.96956 1.02257 0.97102 1.69660 1.13316 1.53775 1.21512 0.86205 0.80649 0.78730 0.80722 1.21803 1.21798 1.20800 1.22957 0.99356 0.95417 1.02342 1.22972 0.91572 1.05052 1.01958 1.23735 0.95139 0.94299 0.99409 1.77331 1.01598 1.08257 1.25065 0.90914 0.89568 0.89345 0.81545 0.91487 0.91633 0.91090 0.91794 0.92345 0.91274 0.76704 0.91121 0.91873 0.91978 0.89563 0.96051 0.96155 0.78165 0.93611 0.89363 0.88619 0.89002 0.89322 0.80142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.47 59.85 0.69 1.33 16 2 N -0.38 -4.06 4.01 -68.17 -0.27 -4.33 16 3 C 0.08 0.85 10.42 -17.22 -0.18 0.67 16 4 C -0.21 -2.37 4.17 -105.05 -0.44 -2.81 16 5 C 0.00 0.00 0.80 -156.82 -0.13 -0.13 16 6 C -0.14 -1.23 7.41 37.15 0.28 -0.95 16 7 C -0.14 -1.01 8.13 37.16 0.30 -0.71 16 8 C 0.52 6.80 6.44 -10.98 -0.07 6.72 16 9 O -0.53 -9.21 15.72 5.56 0.09 -9.12 16 10 N -0.73 -8.65 5.39 -60.29 -0.33 -8.97 16 11 C 0.13 1.74 5.59 -4.04 -0.02 1.71 16 12 C -0.09 -1.28 5.21 -26.73 -0.14 -1.42 16 13 C -0.12 -1.88 1.54 -154.51 -0.24 -2.11 16 14 C 0.19 3.81 6.10 -4.04 -0.02 3.79 16 15 N -0.73 -18.21 5.38 -59.91 -0.32 -18.53 16 16 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.16 -2.39 9.90 -26.73 -0.26 -2.66 16 25 C -0.18 -2.37 9.46 -26.73 -0.25 -2.62 16 26 C 0.06 0.70 10.99 -17.36 -0.19 0.51 16 27 N -0.30 -3.84 12.58 30.63 0.39 -3.46 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.17 1.42 8.00 -52.49 -0.42 1.00 16 32 H 0.07 0.54 8.02 -51.93 -0.42 0.12 16 33 H 0.06 0.64 7.76 -51.93 -0.40 0.24 16 34 H 0.07 0.50 8.11 -51.93 -0.42 0.07 16 35 H 0.06 0.40 7.24 -51.93 -0.38 0.02 16 36 H 0.06 0.42 7.85 -51.93 -0.41 0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 3.80 7.41 -40.82 -0.30 3.49 16 39 H 0.07 1.17 7.88 -51.93 -0.41 0.76 16 40 H 0.06 0.87 7.54 -51.93 -0.39 0.48 16 41 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 42 H 0.09 1.43 7.45 -51.93 -0.39 1.04 16 43 H 0.02 0.45 7.88 -51.93 -0.41 0.04 16 44 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.38 10.02 7.16 -40.82 -0.29 9.73 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 48 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 49 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 51 H 0.18 1.66 7.36 -52.49 -0.39 1.27 16 LS Contribution 416.77 15.07 6.28 6.28 Total: -1.00 -35.47 416.77 -8.16 -43.63 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -8.77 Total: 10.22 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.93 Total: -5.98 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.19 Total: -62.55 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.47 -8.16 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167588015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.268 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds