Wall clock time and date at job start Tue Mar 31 2020 20:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34947 * 126.03930 * 2 1 4 4 C 1.35320 * 107.74855 * 180.14584 * 3 2 1 5 5 C 1.50697 * 126.04143 * 179.87175 * 4 3 2 6 6 C 1.52994 * 109.46992 * 173.95150 * 5 4 3 7 7 C 1.53001 * 109.46743 * 53.95567 * 5 4 3 8 8 C 1.50698 * 109.47386 * 293.95684 * 5 4 3 9 9 O 1.21283 * 120.00188 * 353.78548 * 8 5 4 10 10 N 1.34779 * 120.00045 * 173.79245 * 8 5 4 11 11 C 1.46497 * 119.99921 * 180.02562 * 10 8 5 12 12 C 1.53001 * 109.46958 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47141 * 182.35747 * 12 11 10 14 14 C 1.53002 * 115.55517 * 279.05278 * 13 12 11 15 15 N 1.46504 * 109.46453 * 295.02035 * 14 13 12 16 16 C 1.36937 * 119.99461 * 182.55857 * 15 14 13 17 17 H 1.07998 * 120.00103 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99825 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99801 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00031 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47056 * 90.00042 * 20 18 16 22 22 H 1.48497 * 109.47246 * 210.00345 * 20 18 16 23 23 H 1.48503 * 109.47537 * 330.00662 * 20 18 16 24 24 C 1.53002 * 117.50018 * 133.33796 * 13 12 11 25 25 C 1.52995 * 60.00052 * 252.51232 * 24 13 12 26 26 C 1.39873 * 107.91670 * 359.61853 * 4 3 2 27 27 N 1.30839 * 108.20370 * 0.23533 * 26 4 3 28 28 H 1.08998 * 109.46972 * 270.31055 * 1 2 3 29 29 H 1.08998 * 109.47088 * 30.30462 * 1 2 3 30 30 H 1.08998 * 109.47231 * 150.30321 * 1 2 3 31 31 H 1.08001 * 126.12627 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.47403 * 180.02562 * 6 5 4 33 33 H 1.09006 * 109.47292 * 60.00537 * 6 5 4 34 34 H 1.09000 * 109.47576 * 300.00545 * 6 5 4 35 35 H 1.09005 * 109.46741 * 179.97438 * 7 5 4 36 36 H 1.09004 * 109.47233 * 299.99807 * 7 5 4 37 37 H 1.09000 * 109.46981 * 59.99972 * 7 5 4 38 38 H 0.97001 * 119.99706 * 359.97438 * 10 8 5 39 39 H 1.09005 * 109.47019 * 299.99197 * 11 10 8 40 40 H 1.08995 * 109.47360 * 59.99172 * 11 10 8 41 41 H 1.08998 * 109.47263 * 302.35920 * 12 11 10 42 42 H 1.09001 * 109.46886 * 62.36217 * 12 11 10 43 43 H 1.08997 * 109.46781 * 55.01293 * 14 13 12 44 44 H 1.08994 * 109.47732 * 175.02078 * 14 13 12 45 45 H 0.96998 * 120.00088 * 2.56003 * 15 14 13 46 46 H 0.97007 * 119.99557 * 179.97438 * 19 18 16 47 47 H 1.09003 * 117.49635 * 0.02562 * 24 13 12 48 48 H 1.08998 * 117.49568 * 145.02068 * 24 13 12 49 49 H 1.09007 * 117.50151 * 252.50354 * 25 24 13 50 50 H 1.09004 * 117.49691 * 107.48973 * 25 24 13 51 51 H 1.08002 * 125.89668 * 180.25887 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 6.0191 0.6773 0.1419 7 6 4.6906 2.5328 1.1588 8 6 4.8362 2.3060 -1.3063 9 8 4.0411 2.0684 -2.1907 10 7 5.7809 3.2505 -1.4853 11 6 5.8468 3.9905 -2.7480 12 6 6.9994 4.9950 -2.6907 13 6 7.0317 5.8085 -3.9862 14 6 7.7063 5.1256 -5.1776 15 7 9.1297 4.9338 -4.8888 16 6 9.9527 4.3856 -5.8360 17 1 9.5525 4.0949 -6.7961 18 6 11.3015 4.2043 -5.5626 19 7 11.7893 4.5590 -4.3927 20 14 12.4241 3.4558 -6.8544 21 1 12.9951 4.5352 -7.6994 22 1 13.5244 2.7162 -6.1855 23 1 11.6450 2.5209 -7.7055 24 6 7.1811 7.3262 -3.8638 25 6 5.8384 6.7206 -4.2775 26 6 3.5346 -0.7322 0.0035 27 7 2.2891 -1.1328 0.0055 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8872 -0.5185 30 1 -0.3633 -0.8927 -0.5091 31 1 1.9282 2.1193 0.0004 32 1 6.9047 1.3129 0.1395 33 1 6.0743 -0.0264 -0.6888 34 1 5.9698 0.1270 1.0815 35 1 5.5764 3.1681 1.1562 36 1 3.7992 3.1512 1.0526 37 1 4.6413 1.9825 2.0984 38 1 6.4167 3.4407 -0.7778 39 1 6.0125 3.2933 -3.5694 40 1 4.9089 4.5226 -2.9066 41 1 6.8550 5.6659 -1.8439 42 1 7.9420 4.4602 -2.5740 43 1 7.2378 4.1575 -5.3545 44 1 7.5964 5.7499 -6.0643 45 1 9.4891 5.1952 -4.0266 46 1 12.7318 4.4320 -4.2015 47 1 7.2567 7.7452 -2.8603 48 1 7.7603 7.8385 -4.6320 49 1 5.5341 6.8345 -5.3180 50 1 5.0303 6.7412 -3.5463 51 1 4.4054 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167588015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:24 Heat of formation + Delta-G solvation = 45.189887 kcal Electronic energy + Delta-G solvation = -28836.342782 eV Core-core repulsion = 24965.400385 eV Total energy + Delta-G solvation = -3870.942397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.37525 -40.75731 -39.52366 -36.42900 -36.07521 -35.65623 -33.75180 -32.77159 -31.14596 -30.31497 -28.32646 -27.80746 -27.22334 -25.30882 -24.60827 -23.92413 -22.93827 -21.97795 -21.74717 -20.52899 -19.70754 -18.96944 -18.14192 -17.47047 -16.95375 -16.78693 -16.50049 -16.22667 -16.06404 -15.61175 -15.30135 -15.19182 -14.92109 -14.84064 -14.78438 -14.26799 -14.00362 -13.87486 -13.55951 -13.44942 -13.27863 -13.17043 -13.12570 -12.99666 -12.92012 -12.79106 -12.49455 -12.38325 -12.25594 -12.13152 -11.93736 -11.92633 -11.79411 -11.50569 -11.11073 -10.88802 -10.69395 -10.49264 -10.33535 -10.00462 -9.30950 -8.96237 -7.94106 -5.21336 0.96996 1.46870 1.47882 1.56390 1.67992 1.72124 1.78401 2.40258 2.55078 2.92514 3.38817 3.52759 3.80906 3.86688 3.87740 3.91256 3.99498 4.03132 4.10664 4.17466 4.23534 4.30484 4.41572 4.43023 4.47272 4.52279 4.66644 4.67732 4.78949 4.80563 4.85539 4.87638 4.93291 4.94811 5.00991 5.08289 5.09963 5.13007 5.22025 5.30400 5.32967 5.35803 5.40170 5.40673 5.49323 5.53280 5.69260 6.13887 6.28623 6.65301 6.73978 7.34778 7.35803 8.11871 8.38285 9.29062 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002389 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.403991 B =11718.577922 C =12676.617187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.075 3.925 4 C -0.227 4.227 5 C 0.008 3.992 6 C -0.141 4.141 7 C -0.134 4.134 8 C 0.517 3.483 9 O -0.581 6.581 10 N -0.717 5.717 11 C 0.135 3.865 12 C -0.076 4.076 13 C -0.139 4.139 14 C 0.187 3.813 15 N -0.735 5.735 16 C -0.246 4.246 17 H 0.068 0.932 18 C -0.071 4.071 19 N -0.964 5.964 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.275 1.275 24 C -0.163 4.163 25 C -0.151 4.151 26 C 0.048 3.952 27 N -0.336 5.336 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.186 0.814 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.412 0.588 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.011 0.989 44 H 0.015 0.985 45 H 0.377 0.623 46 H 0.252 0.748 47 H 0.110 0.890 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.116 0.884 51 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.480 -1.896 16.372 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.072 4.072 4 C -0.239 4.239 5 C 0.003 3.997 6 C -0.199 4.199 7 C -0.191 4.191 8 C 0.304 3.696 9 O -0.460 6.460 10 N -0.369 5.369 11 C 0.011 3.989 12 C -0.114 4.114 13 C -0.140 4.140 14 C 0.061 3.939 15 N -0.378 5.378 16 C -0.378 4.378 17 H 0.086 0.914 18 C -0.264 4.264 19 N -0.615 5.615 20 Si 0.798 3.202 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.200 1.200 24 C -0.200 4.200 25 C -0.188 4.188 26 C -0.137 4.137 27 N -0.158 5.158 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.203 0.797 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.249 0.751 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.033 0.967 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.128 0.872 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.134 0.866 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -22.994 -3.156 15.561 27.943 hybrid contribution 1.886 0.301 -0.674 2.025 sum -21.108 -2.855 14.886 25.986 Atomic orbital electron populations 1.22157 0.72261 1.05543 1.04701 1.48731 1.07839 1.03342 1.56480 1.22496 0.90885 0.93877 0.99975 1.19618 0.93767 0.93346 1.17141 1.18994 0.93978 0.94497 0.92209 1.21900 0.94882 0.99771 1.03338 1.21910 1.03137 0.97798 0.96288 1.21151 0.79670 0.79093 0.89646 1.90669 1.42551 1.67016 1.45743 1.45968 1.34080 1.38591 1.18229 1.21108 0.98801 0.93401 0.85542 1.21097 0.97564 0.96910 0.95819 1.21405 1.03677 0.92472 0.96448 1.20228 0.83813 0.95801 0.94064 1.42424 1.04042 1.74840 1.16456 1.19582 0.90560 1.31967 0.95694 0.91376 1.25478 0.98375 1.03388 0.99138 1.69797 1.13338 1.55165 1.23161 0.85205 0.78579 0.77956 0.78411 1.21376 1.21903 1.19978 1.23001 1.00056 0.93808 1.03104 1.23055 0.91265 1.01589 1.02904 1.24052 0.95384 0.94992 0.99287 1.77254 1.02377 1.09753 1.26386 0.88990 0.87566 0.89364 0.79665 0.90733 0.93309 0.89086 0.90357 0.92030 0.90096 0.75091 0.94650 0.91158 0.88878 0.92388 0.97158 0.96700 0.78991 0.93958 0.87186 0.90399 0.88828 0.86625 0.78918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 11.47 127.77 1.47 2.51 16 2 N -0.38 -7.91 4.01 -369.57 -1.48 -9.40 16 3 C 0.07 1.52 10.42 83.54 0.87 2.39 16 4 C -0.23 -4.93 4.17 -20.14 -0.08 -5.01 16 5 C 0.01 0.14 0.80 -53.68 -0.04 0.10 16 6 C -0.14 -2.30 7.41 71.98 0.53 -1.76 16 7 C -0.13 -1.61 8.13 71.98 0.59 -1.03 16 8 C 0.52 13.17 6.44 87.66 0.56 13.73 16 9 O -0.58 -20.08 15.72 -3.04 -0.05 -20.13 16 10 N -0.72 -16.22 5.39 -463.06 -2.50 -18.71 16 11 C 0.14 3.66 5.59 86.38 0.48 4.15 16 12 C -0.08 -2.06 5.21 30.59 0.16 -1.90 16 13 C -0.14 -4.28 1.54 -52.18 -0.08 -4.36 16 14 C 0.19 7.73 6.10 86.38 0.53 8.26 16 15 N -0.73 -37.51 5.38 -343.45 -1.85 -39.36 16 16 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 18 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 19 N -0.96 -58.46 13.06 21.65 0.28 -58.18 16 20 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 24 C -0.16 -4.44 9.90 30.59 0.30 -4.14 16 25 C -0.15 -3.62 9.46 30.59 0.29 -3.33 16 26 C 0.05 1.11 10.99 85.24 0.94 2.05 16 27 N -0.34 -8.57 12.58 -57.02 -0.72 -9.28 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.19 2.84 8.00 -2.91 -0.02 2.82 16 32 H 0.07 1.08 8.02 -2.38 -0.02 1.06 16 33 H 0.05 0.95 7.76 -2.38 -0.02 0.93 16 34 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 35 H 0.08 0.72 7.24 -2.38 -0.02 0.70 16 36 H 0.06 0.72 7.85 -2.39 -0.02 0.70 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.41 7.05 7.41 -92.71 -0.69 6.36 16 39 H 0.04 1.21 7.88 -2.38 -0.02 1.19 16 40 H 0.07 1.82 7.54 -2.39 -0.02 1.80 16 41 H 0.09 1.96 7.94 -2.39 -0.02 1.94 16 42 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 43 H 0.01 0.46 7.88 -2.39 -0.02 0.44 16 44 H 0.02 0.63 8.09 -2.39 -0.02 0.61 16 45 H 0.38 20.10 7.16 -92.71 -0.66 19.44 16 46 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 47 H 0.11 2.53 8.08 -2.39 -0.02 2.51 16 48 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 50 H 0.12 2.22 7.90 -2.38 -0.02 2.20 16 51 H 0.19 3.59 7.36 -2.91 -0.02 3.56 16 Total: -1.00 -78.06 416.77 3.11 -74.95 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -0.43 Total: 36.57 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 7.82 Total: -5.17 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -6.26 Total: -134.93 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.06 3.11 -74.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167588015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.142 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds