Wall clock time and date at job start Tue Mar 31 2020 19:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 C 1.50696 * 109.47089 * 239.99628 * 2 1 3 5 5 C 1.39673 * 126.06777 * 84.72340 * 4 2 1 6 6 C 1.38402 * 105.35941 * 179.85146 * 5 4 2 7 7 C 1.47165 * 126.88572 * 180.10206 * 6 5 4 8 8 O 1.21629 * 120.00309 * 185.91622 * 7 6 5 9 9 N 1.34784 * 119.99736 * 5.91479 * 7 6 5 10 10 C 1.46503 * 119.99830 * 185.19298 * 9 7 6 11 11 C 1.52992 * 109.47034 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47325 * 175.02193 * 11 10 9 13 13 C 1.52996 * 115.54992 * 279.66079 * 12 11 10 14 14 N 1.46492 * 109.47190 * 303.56968 * 13 12 11 15 15 C 1.36942 * 119.99927 * 184.67956 * 14 13 12 16 16 H 1.07997 * 120.00058 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00201 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99632 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00186 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46897 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47135 * 120.00179 * 19 17 15 22 22 H 1.48501 * 109.46725 * 240.00411 * 19 17 15 23 23 C 1.53001 * 117.49821 * 133.95155 * 12 11 10 24 24 C 1.52995 * 60.00234 * 252.51355 * 23 12 11 25 25 N 1.36593 * 106.23175 * 0.39694 * 6 5 4 26 26 C 1.46503 * 125.19296 * 179.73992 * 25 6 5 27 27 N 1.28443 * 109.62026 * 359.73790 * 25 6 5 28 28 H 1.09003 * 109.46430 * 60.00100 * 1 2 3 29 29 H 1.09001 * 109.47120 * 300.00608 * 1 2 3 30 30 H 1.08999 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46430 * 119.99900 * 2 1 3 32 32 H 1.09003 * 109.47318 * 60.00115 * 3 2 1 33 33 H 1.09002 * 109.47089 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47483 * 299.99843 * 3 2 1 35 35 H 1.08002 * 127.32278 * 359.95243 * 5 4 2 36 36 H 0.97001 * 120.00226 * 5.19627 * 9 7 6 37 37 H 1.09007 * 109.46579 * 299.99774 * 10 9 7 38 38 H 1.08993 * 109.47256 * 59.99577 * 10 9 7 39 39 H 1.09000 * 109.47080 * 295.02086 * 11 10 9 40 40 H 1.09004 * 109.47521 * 55.02311 * 11 10 9 41 41 H 1.09005 * 109.47017 * 63.57391 * 13 12 11 42 42 H 1.09005 * 109.46763 * 183.56924 * 13 12 11 43 43 H 0.97000 * 120.00202 * 4.68597 * 14 13 12 44 44 H 0.96999 * 119.99561 * 180.02562 * 18 17 15 45 45 H 1.09004 * 117.49948 * 0.02562 * 23 12 11 46 46 H 1.08997 * 117.49758 * 145.02226 * 23 12 11 47 47 H 1.09002 * 117.50264 * 252.51477 * 24 23 12 48 48 H 1.09001 * 117.50121 * 107.48847 * 24 23 12 49 49 H 1.08997 * 109.46990 * 266.46988 * 26 25 6 50 50 H 1.09003 * 109.46654 * 26.46308 * 26 25 6 51 51 H 1.08994 * 109.47108 * 146.46304 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.2086 -0.1419 -2.4939 6 6 2.6858 -1.1659 -3.2934 7 6 3.0349 -1.0828 -4.7206 8 8 3.3424 -2.0888 -5.3311 9 7 3.0136 0.1082 -5.3513 10 6 3.2495 0.1765 -6.7956 11 6 3.1720 1.6332 -7.2567 12 6 3.5400 1.7193 -8.7392 13 6 5.0381 1.7026 -9.0493 14 7 5.6982 2.7938 -8.3284 15 6 7.0311 3.0376 -8.5265 16 1 7.5955 2.4258 -9.2145 17 6 7.6567 4.0712 -7.8430 18 7 6.9688 4.8166 -7.0041 19 14 9.4747 4.4043 -8.1138 20 1 10.0147 3.4325 -9.0983 21 1 9.6534 5.7848 -8.6310 22 1 10.2014 4.2599 -6.8268 23 6 2.6406 2.5656 -9.6424 24 6 2.6037 1.0392 -9.7402 25 7 2.7616 -2.2708 -2.4939 26 6 3.2139 -3.5958 -2.9254 27 7 2.3757 -1.9710 -1.3061 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.0153 0.8801 -2.7849 36 1 2.8422 0.9201 -4.8490 37 1 4.2380 -0.2236 -7.0216 38 1 2.4924 -0.4104 -7.3156 39 1 2.1582 2.0067 -7.1117 40 1 3.8682 2.2364 -6.6739 41 1 5.4636 0.7496 -8.7348 42 1 5.1888 1.8318 -10.1211 43 1 5.1912 3.3435 -7.7106 44 1 7.4059 5.5391 -6.5267 45 1 1.7869 3.0614 -9.1803 46 1 3.1161 3.1108 -10.4577 47 1 3.0551 0.5801 -10.6197 48 1 1.7257 0.5304 -9.3424 49 1 2.3532 -4.1940 -3.2244 50 1 3.8941 -3.4900 -3.7705 51 1 3.7309 -4.0890 -2.1023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167595282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:19 Heat of formation + Delta-G solvation = 60.769651 kcal Electronic energy + Delta-G solvation = -28623.225930 eV Core-core repulsion = 24752.959122 eV Total energy + Delta-G solvation = -3870.266808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.73252 -39.52851 -38.25570 -36.19787 -34.96402 -33.95340 -32.55195 -31.52905 -30.79284 -29.55497 -27.39962 -26.92751 -26.00749 -24.31462 -23.18246 -22.75418 -22.29032 -21.67765 -20.58925 -19.61002 -18.55307 -17.72030 -17.11411 -16.50303 -16.33536 -15.80046 -15.47968 -15.04777 -14.81694 -14.44984 -14.37320 -14.21213 -14.10777 -13.74770 -13.50615 -13.34641 -13.10049 -12.77393 -12.70098 -12.63300 -12.42358 -12.31299 -11.93458 -11.64095 -11.46785 -11.41774 -11.35659 -11.17196 -10.96231 -10.85940 -10.70169 -10.60836 -10.18074 -10.07535 -9.93618 -9.69734 -9.36423 -9.34009 -9.05144 -9.00265 -8.84899 -6.90823 -5.77314 -3.04868 1.13229 2.21379 2.38460 3.10843 3.12746 3.42991 3.49049 3.50889 4.03218 4.15492 4.41194 4.60430 4.66025 4.80062 4.94762 4.98198 4.98997 5.05232 5.10827 5.12998 5.17252 5.28119 5.32183 5.36844 5.42599 5.44878 5.51372 5.57708 5.63422 5.65715 5.70957 5.72654 5.80879 5.88208 6.02862 6.09161 6.12320 6.12340 6.18331 6.29844 6.37759 6.40994 6.43155 6.55459 6.56728 6.75435 6.81026 7.34849 7.70663 7.90126 8.04334 8.42110 9.53799 10.11642 10.47016 11.45697 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.002643 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.190471 B =10590.897106 C =11634.364848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.009 4.009 3 C -0.145 4.145 4 C 0.032 3.968 5 C -0.182 4.182 6 C -0.034 4.034 7 C 0.590 3.410 8 O -0.543 6.543 9 N -0.708 5.708 10 C 0.127 3.873 11 C -0.093 4.093 12 C -0.118 4.118 13 C 0.187 3.813 14 N -0.728 5.728 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.164 4.164 24 C -0.178 4.178 25 N -0.258 5.258 26 C 0.085 3.915 27 N -0.278 5.278 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.160 0.840 36 H 0.404 0.596 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.112 0.888 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.705 -11.032 10.282 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 C -0.203 4.203 4 C -0.124 4.124 5 C -0.211 4.211 6 C -0.162 4.162 7 C 0.375 3.625 8 O -0.421 6.421 9 N -0.359 5.359 10 C 0.005 3.995 11 C -0.131 4.131 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.372 5.372 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.201 4.201 24 C -0.216 4.216 25 N -0.045 5.045 26 C -0.055 4.055 27 N -0.111 5.111 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.178 0.822 36 H 0.239 0.761 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.131 0.869 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.164 -12.922 10.302 22.429 hybrid contribution 0.766 1.483 -0.225 1.685 sum -14.397 -11.438 10.078 20.968 Atomic orbital electron populations 1.21817 0.93997 1.02026 1.02108 1.19421 0.95558 0.95081 0.92873 1.21843 1.01606 0.94511 1.02339 1.21922 1.04138 0.90095 0.96276 1.22071 1.06623 0.99546 0.92853 1.21415 1.11456 0.89184 0.94158 1.16881 0.77502 0.84069 0.84056 1.90777 1.48802 1.35225 1.67333 1.45718 1.71712 1.08245 1.10208 1.21431 1.02435 0.97809 0.77873 1.21272 1.01861 0.95081 0.94853 1.21543 0.94470 1.04837 0.91079 1.20177 0.86552 0.92131 0.95152 1.42317 1.07922 1.35733 1.51247 1.19274 0.85821 1.11569 1.20136 0.91224 1.24712 0.98029 0.98604 0.99635 1.69663 1.35090 1.22265 1.31180 0.86139 0.85294 0.77637 0.77274 1.20602 1.21898 1.21900 1.22984 1.01505 0.93018 1.02640 1.22974 1.01477 0.95565 1.01549 1.45519 1.44477 1.09556 1.04942 1.22357 1.01927 0.78686 1.02491 1.73106 1.17184 1.17854 1.02976 0.92319 0.92001 0.92658 0.89899 0.91923 0.92196 0.92017 0.82239 0.76053 0.90465 0.91496 0.91778 0.89217 0.96175 0.95903 0.78145 0.93632 0.89295 0.88658 0.88928 0.89230 0.89827 0.86946 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.15 -1.09 8.79 37.15 0.33 -0.77 16 4 C 0.03 0.37 6.12 -82.47 -0.51 -0.14 16 5 C -0.18 -2.04 9.65 -38.99 -0.38 -2.42 16 6 C -0.03 -0.44 6.96 -82.06 -0.57 -1.01 16 7 C 0.59 8.31 7.78 -12.63 -0.10 8.21 16 8 O -0.54 -8.92 14.70 5.25 0.08 -8.84 16 9 N -0.71 -8.91 5.53 -61.47 -0.34 -9.25 16 10 C 0.13 1.73 5.51 -4.04 -0.02 1.71 16 11 C -0.09 -1.29 5.18 -26.73 -0.14 -1.43 16 12 C -0.12 -1.82 1.66 -154.51 -0.26 -2.08 16 13 C 0.19 3.71 6.14 -4.05 -0.02 3.69 16 14 N -0.73 -17.91 5.37 -59.91 -0.32 -18.23 16 15 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 C -0.16 -2.31 9.87 -26.73 -0.26 -2.57 16 24 C -0.18 -2.27 9.62 -26.73 -0.26 -2.52 16 25 N -0.26 -3.29 3.75 -63.88 -0.24 -3.53 16 26 C 0.09 0.84 10.87 59.85 0.65 1.50 16 27 N -0.28 -3.59 11.90 33.64 0.40 -3.19 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 35 H 0.16 1.38 7.10 -52.49 -0.37 1.01 16 36 H 0.40 4.25 7.56 -40.82 -0.31 3.94 16 37 H 0.08 1.24 7.84 -51.93 -0.41 0.83 16 38 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 39 H 0.06 0.76 7.94 -51.93 -0.41 0.35 16 40 H 0.09 1.48 6.78 -51.93 -0.35 1.13 16 41 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 42 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 43 H 0.38 9.82 6.50 -40.82 -0.27 9.55 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 46 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.09 1.00 8.01 -51.93 -0.42 0.59 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.11 1.22 6.24 -51.93 -0.32 0.90 16 51 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 416.16 15.07 6.27 6.27 Total: -1.00 -33.08 416.16 -8.87 -41.95 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.67 Total: 10.58 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.75 Total: -6.14 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.22 Total: -61.18 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.08 -8.87 -41.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167595282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.721 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds