Wall clock time and date at job start Tue Mar 31 2020 19:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 C 1.50696 * 109.47089 * 239.99628 * 2 1 3 5 5 C 1.39673 * 126.06777 * 84.72340 * 4 2 1 6 6 C 1.38402 * 105.35941 * 179.85146 * 5 4 2 7 7 C 1.47165 * 126.88572 * 180.10206 * 6 5 4 8 8 O 1.21629 * 120.00309 * 185.91622 * 7 6 5 9 9 N 1.34784 * 119.99736 * 5.91479 * 7 6 5 10 10 C 1.46503 * 119.99830 * 185.19298 * 9 7 6 11 11 C 1.52992 * 109.47034 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47325 * 175.02193 * 11 10 9 13 13 C 1.52996 * 115.54992 * 279.66079 * 12 11 10 14 14 N 1.46492 * 109.47190 * 303.56968 * 13 12 11 15 15 C 1.36942 * 119.99927 * 184.67956 * 14 13 12 16 16 H 1.07997 * 120.00058 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00201 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99632 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00186 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46897 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47135 * 120.00179 * 19 17 15 22 22 H 1.48501 * 109.46725 * 240.00411 * 19 17 15 23 23 C 1.53001 * 117.49821 * 133.95155 * 12 11 10 24 24 C 1.52995 * 60.00234 * 252.51355 * 23 12 11 25 25 N 1.36593 * 106.23175 * 0.39694 * 6 5 4 26 26 C 1.46503 * 125.19296 * 179.73992 * 25 6 5 27 27 N 1.28443 * 109.62026 * 359.73790 * 25 6 5 28 28 H 1.09003 * 109.46430 * 60.00100 * 1 2 3 29 29 H 1.09001 * 109.47120 * 300.00608 * 1 2 3 30 30 H 1.08999 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46430 * 119.99900 * 2 1 3 32 32 H 1.09003 * 109.47318 * 60.00115 * 3 2 1 33 33 H 1.09002 * 109.47089 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47483 * 299.99843 * 3 2 1 35 35 H 1.08002 * 127.32278 * 359.95243 * 5 4 2 36 36 H 0.97001 * 120.00226 * 5.19627 * 9 7 6 37 37 H 1.09007 * 109.46579 * 299.99774 * 10 9 7 38 38 H 1.08993 * 109.47256 * 59.99577 * 10 9 7 39 39 H 1.09000 * 109.47080 * 295.02086 * 11 10 9 40 40 H 1.09004 * 109.47521 * 55.02311 * 11 10 9 41 41 H 1.09005 * 109.47017 * 63.57391 * 13 12 11 42 42 H 1.09005 * 109.46763 * 183.56924 * 13 12 11 43 43 H 0.97000 * 120.00202 * 4.68597 * 14 13 12 44 44 H 0.96999 * 119.99561 * 180.02562 * 18 17 15 45 45 H 1.09004 * 117.49948 * 0.02562 * 23 12 11 46 46 H 1.08997 * 117.49758 * 145.02226 * 23 12 11 47 47 H 1.09002 * 117.50264 * 252.51477 * 24 23 12 48 48 H 1.09001 * 117.50121 * 107.48847 * 24 23 12 49 49 H 1.08997 * 109.46990 * 266.46988 * 26 25 6 50 50 H 1.09003 * 109.46654 * 26.46308 * 26 25 6 51 51 H 1.08994 * 109.47108 * 146.46304 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.2086 -0.1419 -2.4939 6 6 2.6858 -1.1659 -3.2934 7 6 3.0349 -1.0828 -4.7206 8 8 3.3424 -2.0888 -5.3311 9 7 3.0136 0.1082 -5.3513 10 6 3.2495 0.1765 -6.7956 11 6 3.1720 1.6332 -7.2567 12 6 3.5400 1.7193 -8.7392 13 6 5.0381 1.7026 -9.0493 14 7 5.6982 2.7938 -8.3284 15 6 7.0311 3.0376 -8.5265 16 1 7.5955 2.4258 -9.2145 17 6 7.6567 4.0712 -7.8430 18 7 6.9688 4.8166 -7.0041 19 14 9.4747 4.4043 -8.1138 20 1 10.0147 3.4325 -9.0983 21 1 9.6534 5.7848 -8.6310 22 1 10.2014 4.2599 -6.8268 23 6 2.6406 2.5656 -9.6424 24 6 2.6037 1.0392 -9.7402 25 7 2.7616 -2.2708 -2.4939 26 6 3.2139 -3.5958 -2.9254 27 7 2.3757 -1.9710 -1.3061 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.0153 0.8801 -2.7849 36 1 2.8422 0.9201 -4.8490 37 1 4.2380 -0.2236 -7.0216 38 1 2.4924 -0.4104 -7.3156 39 1 2.1582 2.0067 -7.1117 40 1 3.8682 2.2364 -6.6739 41 1 5.4636 0.7496 -8.7348 42 1 5.1888 1.8318 -10.1211 43 1 5.1912 3.3435 -7.7106 44 1 7.4059 5.5391 -6.5267 45 1 1.7869 3.0614 -9.1803 46 1 3.1161 3.1108 -10.4577 47 1 3.0551 0.5801 -10.6197 48 1 1.7257 0.5304 -9.3424 49 1 2.3532 -4.1940 -3.2244 50 1 3.8941 -3.4900 -3.7705 51 1 3.7309 -4.0890 -2.1023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167595282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:17 Heat of formation + Delta-G solvation = 40.095911 kcal Electronic energy + Delta-G solvation = -28624.122410 eV Core-core repulsion = 24752.959122 eV Total energy + Delta-G solvation = -3871.163288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.64134 -40.64371 -39.48534 -36.93215 -36.15277 -35.78667 -33.36373 -32.78568 -32.51431 -30.63599 -28.02155 -27.80382 -27.69108 -25.42364 -24.61217 -24.08134 -23.31487 -22.72790 -21.55889 -20.57184 -19.79730 -19.08031 -18.66330 -17.44372 -17.39224 -16.80251 -16.75006 -16.49337 -16.06826 -15.69284 -15.53805 -15.12395 -15.04312 -14.94807 -14.70395 -14.62446 -14.20257 -14.15835 -13.97229 -13.51584 -13.39123 -13.16284 -13.01382 -12.86853 -12.82389 -12.54879 -12.31099 -12.25875 -12.15207 -12.08252 -12.00756 -11.93875 -11.81534 -11.47383 -11.26851 -11.11450 -10.89237 -10.52936 -10.40135 -10.04157 -9.89181 -8.95540 -7.94394 -5.21200 0.14940 1.32458 1.46493 1.46982 1.50340 1.56611 2.07267 2.12832 2.54718 2.91688 3.35797 3.39253 3.45474 3.83528 3.85052 3.89305 4.00244 4.09140 4.12885 4.24112 4.25661 4.28369 4.32804 4.41412 4.45065 4.48641 4.54456 4.59204 4.65087 4.72559 4.86747 4.90005 4.93810 4.98901 5.05725 5.07997 5.10506 5.18749 5.21330 5.27496 5.33767 5.36288 5.39507 5.42506 5.46475 5.50197 5.53038 5.69570 6.28736 6.32957 6.94817 7.03989 7.36022 8.12384 8.38038 9.28963 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.002643 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.190471 B =10590.897106 C =11634.364848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.009 4.009 3 C -0.143 4.143 4 C 0.026 3.974 5 C -0.175 4.175 6 C -0.055 4.055 7 C 0.589 3.411 8 O -0.572 6.572 9 N -0.699 5.699 10 C 0.137 3.863 11 C -0.080 4.080 12 C -0.139 4.139 13 C 0.187 3.813 14 N -0.736 5.736 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.071 4.071 18 N -0.963 5.963 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.294 1.294 23 C -0.164 4.164 24 C -0.151 4.151 25 N -0.268 5.268 26 C 0.082 3.918 27 N -0.295 5.295 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.184 0.816 36 H 0.415 0.585 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.012 0.988 42 H 0.018 0.982 43 H 0.378 0.622 44 H 0.251 0.749 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.227 -10.865 10.514 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.130 4.130 5 C -0.204 4.204 6 C -0.183 4.183 7 C 0.375 3.625 8 O -0.453 6.453 9 N -0.350 5.350 10 C 0.013 3.987 11 C -0.117 4.117 12 C -0.140 4.140 13 C 0.060 3.940 14 N -0.379 5.379 15 C -0.376 4.376 16 H 0.087 0.913 17 C -0.264 4.264 18 N -0.614 5.614 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.219 1.219 22 H -0.221 1.221 23 C -0.201 4.201 24 C -0.188 4.188 25 N -0.055 5.055 26 C -0.057 4.057 27 N -0.129 5.129 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.201 0.799 36 H 0.252 0.748 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.211 0.789 44 H 0.060 0.940 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.134 0.866 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.697 -12.768 10.515 23.502 hybrid contribution 1.226 1.384 -0.314 1.876 sum -15.470 -11.383 10.201 21.748 Atomic orbital electron populations 1.21787 0.92869 1.01703 1.03132 1.19543 0.96406 0.95403 0.91552 1.21840 1.00865 0.93869 1.03496 1.22460 1.03481 0.89779 0.97310 1.22410 1.05305 1.00221 0.92429 1.21433 1.12873 0.90159 0.93827 1.17062 0.77007 0.83922 0.84508 1.90757 1.50242 1.36214 1.68072 1.45623 1.71069 1.08413 1.09942 1.21271 1.01159 0.97701 0.78528 1.21128 1.02619 0.94590 0.93396 1.21374 0.91976 1.08043 0.92640 1.20236 0.89617 0.90035 0.94075 1.42464 1.07206 1.36686 1.51533 1.19620 0.87362 1.11173 1.19460 0.91282 1.25459 1.01980 0.98922 1.00006 1.69797 1.36512 1.22836 1.32282 0.85162 0.80666 0.77408 0.77071 1.19511 1.21861 1.22092 1.23042 1.01324 0.94058 1.01632 1.23065 1.00788 0.94793 1.00140 1.45779 1.44624 1.10186 1.04897 1.22466 1.02356 0.78173 1.02703 1.73097 1.17791 1.18823 1.03164 0.92131 0.90140 0.93643 0.90018 0.90234 0.93337 0.91443 0.79890 0.74778 0.93510 0.90170 0.88776 0.92148 0.97051 0.96396 0.78907 0.94011 0.87292 0.90097 0.88583 0.86624 0.88627 0.88259 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.18 71.98 0.66 -1.10 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.18 16 3 C -0.14 -1.88 8.79 71.98 0.63 -1.24 16 4 C 0.03 0.56 6.12 43.05 0.26 0.83 16 5 C -0.17 -3.71 9.65 22.66 0.22 -3.49 16 6 C -0.05 -1.40 6.96 40.79 0.28 -1.11 16 7 C 0.59 16.51 7.78 86.59 0.67 17.18 16 8 O -0.57 -19.05 14.70 -4.12 -0.06 -19.11 16 9 N -0.70 -17.09 5.53 -466.62 -2.58 -19.68 16 10 C 0.14 3.61 5.51 86.38 0.48 4.09 16 11 C -0.08 -2.12 5.18 30.59 0.16 -1.96 16 12 C -0.14 -4.13 1.66 -52.18 -0.09 -4.22 16 13 C 0.19 7.46 6.14 86.38 0.53 7.99 16 14 N -0.74 -36.82 5.37 -343.46 -1.85 -38.66 16 15 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 16 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 18 N -0.96 -57.93 13.06 21.65 0.28 -57.65 16 19 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 23 C -0.16 -4.24 9.87 30.59 0.30 -3.94 16 24 C -0.15 -3.42 9.62 30.59 0.29 -3.12 16 25 N -0.27 -6.77 3.75 -356.03 -1.33 -8.10 16 26 C 0.08 1.64 10.87 127.77 1.39 3.03 16 27 N -0.30 -7.48 11.90 -47.50 -0.57 -8.05 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.80 7.37 -2.39 -0.02 0.79 16 35 H 0.18 2.79 7.10 -2.91 -0.02 2.77 16 36 H 0.42 8.22 7.56 -92.71 -0.70 7.52 16 37 H 0.05 1.53 7.84 -2.38 -0.02 1.51 16 38 H 0.08 1.93 7.85 -2.39 -0.02 1.91 16 39 H 0.09 1.95 7.94 -2.39 -0.02 1.93 16 40 H 0.06 1.99 6.78 -2.38 -0.02 1.97 16 41 H 0.01 0.48 7.84 -2.38 -0.02 0.47 16 42 H 0.02 0.73 8.10 -2.38 -0.02 0.72 16 43 H 0.38 19.70 6.50 -92.71 -0.60 19.09 16 44 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 46 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.12 2.09 8.01 -2.39 -0.02 2.07 16 49 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 50 H 0.10 2.25 6.24 -2.39 -0.01 2.23 16 51 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -71.79 416.16 2.61 -69.18 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.37 Total: 37.42 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 7.06 Total: -3.71 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -6.04 Total: -132.14 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.06 Total: -19.11 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -71.79 2.61 -69.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167595282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.275 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds