Wall clock time and date at job start Tue Mar 31 2020 19:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47743 * 2 1 4 4 C 1.50702 * 109.47016 * 120.00455 * 2 1 3 5 5 N 1.32159 * 120.53924 * 290.33864 * 4 2 1 6 6 C 1.31852 * 120.97033 * 180.02562 * 5 4 2 7 7 N 1.31886 * 122.09463 * 359.97438 * 6 5 4 8 8 C 1.32127 * 120.96582 * 0.02562 * 7 6 5 9 9 C 1.39930 * 120.53589 * 110.35657 * 4 2 1 10 10 C 1.47834 * 120.94218 * 359.96038 * 9 4 2 11 11 O 1.21551 * 120.00100 * 323.56665 * 10 9 4 12 12 N 1.34773 * 119.99715 * 143.56668 * 10 9 4 13 13 C 1.46505 * 119.99699 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47083 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46997 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.46953 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46953 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47378 * 180.02562 * 17 16 15 19 19 N 1.46495 * 109.47588 * 180.02562 * 18 17 16 20 20 C 1.36941 * 120.00142 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00159 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99735 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00619 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99778 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47330 * 89.99684 * 24 22 20 26 26 H 1.48503 * 109.47279 * 210.00087 * 24 22 20 27 27 H 1.48499 * 109.47117 * 329.99426 * 24 22 20 28 28 H 1.08999 * 109.47013 * 299.99874 * 1 2 3 29 29 H 1.09004 * 109.46883 * 59.99872 * 1 2 3 30 30 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46794 * 240.00300 * 2 1 3 32 32 H 1.08996 * 109.47714 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47299 * 300.00290 * 3 2 1 34 34 H 1.09007 * 109.46731 * 60.00262 * 3 2 1 35 35 H 1.08002 * 118.94986 * 180.28077 * 6 5 4 36 36 H 1.08000 * 120.53861 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00595 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.46878 * 299.99432 * 13 12 10 39 39 H 1.08997 * 109.47072 * 60.00137 * 13 12 10 40 40 H 1.09000 * 109.46755 * 299.99452 * 14 13 12 41 41 H 1.08997 * 109.47099 * 60.00099 * 14 13 12 42 42 H 1.08995 * 109.47520 * 299.99878 * 15 14 13 43 43 H 1.09003 * 109.47469 * 60.00030 * 15 14 13 44 44 H 1.08991 * 109.47305 * 299.99936 * 16 15 14 45 45 H 1.08997 * 109.46800 * 60.00391 * 16 15 14 46 46 H 1.09007 * 109.47194 * 300.00403 * 17 16 15 47 47 H 1.08998 * 109.47471 * 59.99688 * 17 16 15 48 48 H 1.09007 * 109.46975 * 300.00155 * 18 17 16 49 49 H 1.09006 * 109.47293 * 59.99586 * 18 17 16 50 50 H 0.96994 * 120.00019 * 359.97438 * 19 18 17 51 51 H 0.97001 * 120.00166 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8831 -0.1688 2.4266 6 6 2.3198 -0.7827 3.5087 7 7 2.9205 -1.9556 3.4547 8 6 3.1114 -2.5691 2.3002 9 6 2.6645 -1.9544 1.1248 10 6 2.8544 -2.6012 -0.1908 11 8 1.9991 -2.4976 -1.0482 12 7 3.9761 -3.3058 -0.4396 13 6 4.1646 -3.9464 -1.7436 14 6 5.5090 -4.6766 -1.7636 15 6 5.7055 -5.3461 -3.1252 16 6 7.0502 -6.0758 -3.1454 17 6 7.2470 -6.7448 -4.5072 18 6 8.5913 -7.4750 -4.5272 19 7 8.7801 -8.1151 -5.8314 20 6 9.9193 -8.8318 -6.0839 21 1 10.6788 -8.9249 -5.3218 22 6 10.0983 -9.4378 -7.3198 23 7 9.1730 -9.3240 -8.2489 24 14 11.6526 -10.4149 -7.6645 25 1 11.4419 -11.8330 -7.2776 26 1 11.9740 -10.3392 -9.1124 27 1 12.7777 -9.8490 -6.8776 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 2.1766 -0.3124 4.4703 36 1 3.6039 -3.5296 2.2640 37 1 4.6589 -3.3882 0.2444 38 1 3.3605 -4.6617 -1.9166 39 1 4.1510 -3.1880 -2.5263 40 1 6.3133 -3.9617 -1.5904 41 1 5.5221 -5.4351 -0.9809 42 1 4.9012 -6.0611 -3.2981 43 1 5.6922 -4.5880 -3.9082 44 1 7.8543 -5.3606 -2.9727 45 1 7.0638 -6.8340 -2.3624 46 1 6.4428 -7.4600 -4.6803 47 1 7.2333 -5.9864 -5.2900 48 1 9.3957 -6.7601 -4.3539 49 1 8.6045 -8.2335 -3.7445 50 1 8.0978 -8.0318 -6.5158 51 1 9.2983 -9.7471 -9.1127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180285408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:18 Heat of formation + Delta-G solvation = -11.770869 kcal Electronic energy + Delta-G solvation = -27020.793877 eV Core-core repulsion = 23147.381476 eV Total energy + Delta-G solvation = -3873.412401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94914 -39.85105 -37.07268 -36.51144 -35.44760 -34.12543 -33.60874 -32.46432 -31.69237 -29.96774 -27.54797 -27.24283 -25.71878 -25.35842 -23.97531 -22.37151 -21.66018 -21.32348 -20.86752 -20.68626 -18.46823 -18.19848 -17.26864 -16.98129 -16.50846 -16.20701 -15.64504 -15.21008 -15.02729 -14.85523 -14.58773 -14.53979 -14.20802 -14.06341 -13.54732 -13.51334 -13.42820 -13.01555 -12.77680 -12.57496 -12.41682 -12.23526 -12.01086 -11.82636 -11.76012 -11.45201 -11.38489 -11.19419 -11.10527 -10.94837 -10.76308 -10.73793 -10.46758 -10.28534 -10.27049 -10.17806 -9.96905 -9.84483 -9.64813 -9.54468 -8.84959 -6.89344 -5.74526 -3.03037 -0.08528 0.41465 2.17071 2.55761 3.13347 3.38987 3.44555 3.48196 3.49266 3.51307 3.68731 4.06470 4.25927 4.44723 4.60236 4.60983 4.65249 4.67165 4.70811 4.84140 4.88372 5.16887 5.18253 5.27747 5.29634 5.33417 5.41830 5.47684 5.51954 5.56675 5.60498 5.62740 5.65403 5.69329 5.83497 5.86365 5.91309 5.91857 5.96993 6.09660 6.29636 6.30898 6.31943 6.40152 6.46881 6.88995 6.90530 6.94551 7.41221 7.60074 7.71454 8.44835 9.55506 10.15064 10.49491 11.48559 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.001334 C = 0.001296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.067107 B =20986.781890 C =21592.892953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 C -0.141 4.141 4 C 0.240 3.760 5 N -0.516 5.516 6 C 0.315 3.685 7 N -0.525 5.525 8 C 0.183 3.817 9 C -0.242 4.242 10 C 0.567 3.433 11 O -0.519 6.519 12 N -0.721 5.721 13 C 0.117 3.883 14 C -0.132 4.132 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.202 0.798 36 H 0.174 0.826 37 H 0.401 0.599 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.364 21.358 24.512 36.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 C -0.199 4.199 4 C 0.093 3.907 5 N -0.229 5.229 6 C 0.028 3.972 7 N -0.238 5.238 8 C 0.016 3.984 9 C -0.249 4.249 10 C 0.352 3.648 11 O -0.396 6.396 12 N -0.372 5.372 13 C -0.006 4.006 14 C -0.170 4.170 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.191 0.809 37 H 0.236 0.764 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.034 0.966 49 H 0.034 0.966 50 H 0.217 0.783 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.937 21.792 24.794 37.568 hybrid contribution 1.183 -1.127 -0.755 1.800 sum -16.754 20.665 24.038 35.855 Atomic orbital electron populations 1.21679 0.92490 1.02420 1.02453 1.20540 0.97659 0.96492 0.93488 1.21798 1.00719 0.94432 1.02926 1.21919 0.86015 0.88741 0.94018 1.68330 1.19986 1.35936 0.98638 1.25269 0.87062 0.87209 0.97619 1.68468 1.16032 1.10823 1.28502 1.23498 0.90077 0.98272 0.86519 1.21648 1.07295 0.99629 0.96373 1.17774 0.82245 0.78565 0.86223 1.90798 1.42341 1.59855 1.46578 1.45992 1.20567 1.53071 1.17560 1.21549 0.98338 0.96940 0.83788 1.21844 0.95712 0.99848 0.99558 1.21516 0.98570 0.99743 0.95589 1.21498 0.96185 0.99267 0.98194 1.21729 0.98903 0.99589 0.96243 1.20656 0.93506 0.94061 0.89338 1.42392 1.22397 1.61605 1.11526 1.19260 0.96324 1.23876 0.97643 0.91217 1.24749 0.98428 1.01496 0.96461 1.69663 1.34263 1.49093 1.05305 0.86179 0.82770 0.80043 0.77145 1.21723 1.21749 1.20782 0.92129 0.91474 0.92346 0.87110 0.93030 0.91621 0.91369 0.78133 0.80929 0.76425 0.90870 0.90915 0.91186 0.91146 0.91546 0.91567 0.92093 0.92076 0.92079 0.92076 0.96606 0.96601 0.78336 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.18 37.15 0.34 -0.64 16 2 C -0.06 -0.50 2.72 -91.78 -0.25 -0.75 16 3 C -0.14 -0.93 9.02 37.15 0.34 -0.60 16 4 C 0.24 2.01 5.55 -81.82 -0.45 1.55 16 5 N -0.52 -4.09 9.89 -10.48 -0.10 -4.20 16 6 C 0.32 2.06 12.27 -92.03 -1.13 0.93 16 7 N -0.52 -3.78 10.42 -14.24 -0.15 -3.93 16 8 C 0.18 1.15 10.64 -16.78 -0.18 0.97 16 9 C -0.24 -1.86 5.81 -104.69 -0.61 -2.47 16 10 C 0.57 4.86 7.04 -12.34 -0.09 4.77 16 11 O -0.52 -6.06 14.49 5.32 0.08 -5.99 16 12 N -0.72 -4.54 5.49 -61.25 -0.34 -4.88 16 13 C 0.12 0.84 5.67 -4.04 -0.02 0.81 16 14 C -0.13 -0.88 5.33 -26.73 -0.14 -1.02 16 15 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 16 C -0.11 -1.31 5.21 -26.73 -0.14 -1.45 16 17 C -0.13 -2.00 5.33 -26.73 -0.14 -2.15 16 18 C 0.15 3.11 6.26 -4.05 -0.03 3.08 16 19 N -0.74 -19.24 5.60 -59.91 -0.34 -19.57 16 20 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 24 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.11 1.03 5.30 -51.92 -0.28 0.76 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.46 7.92 -51.92 -0.41 0.05 16 35 H 0.20 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.17 0.56 7.77 -52.49 -0.41 0.16 16 37 H 0.40 1.52 7.80 -40.82 -0.32 1.20 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 51 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 419.62 15.07 6.32 6.32 Total: -1.00 -34.45 419.62 -10.59 -45.04 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.88 Total: 3.33 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.89 Total: -5.75 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.20 Total: -60.59 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: 0.08 Total: -5.99 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.45 -10.59 -45.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180285408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.271 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds