Wall clock time and date at job start Tue Mar 31 2020 19:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47743 * 2 1 4 4 C 1.50702 * 109.47016 * 120.00455 * 2 1 3 5 5 N 1.32159 * 120.53924 * 290.33864 * 4 2 1 6 6 C 1.31852 * 120.97033 * 180.02562 * 5 4 2 7 7 N 1.31886 * 122.09463 * 359.97438 * 6 5 4 8 8 C 1.32127 * 120.96582 * 0.02562 * 7 6 5 9 9 C 1.39930 * 120.53589 * 110.35657 * 4 2 1 10 10 C 1.47834 * 120.94218 * 359.96038 * 9 4 2 11 11 O 1.21551 * 120.00100 * 323.56665 * 10 9 4 12 12 N 1.34773 * 119.99715 * 143.56668 * 10 9 4 13 13 C 1.46505 * 119.99699 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47083 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46997 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.46953 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46953 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47378 * 180.02562 * 17 16 15 19 19 N 1.46495 * 109.47588 * 180.02562 * 18 17 16 20 20 C 1.36941 * 120.00142 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00159 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99735 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00619 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99778 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47330 * 89.99684 * 24 22 20 26 26 H 1.48503 * 109.47279 * 210.00087 * 24 22 20 27 27 H 1.48499 * 109.47117 * 329.99426 * 24 22 20 28 28 H 1.08999 * 109.47013 * 299.99874 * 1 2 3 29 29 H 1.09004 * 109.46883 * 59.99872 * 1 2 3 30 30 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46794 * 240.00300 * 2 1 3 32 32 H 1.08996 * 109.47714 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47299 * 300.00290 * 3 2 1 34 34 H 1.09007 * 109.46731 * 60.00262 * 3 2 1 35 35 H 1.08002 * 118.94986 * 180.28077 * 6 5 4 36 36 H 1.08000 * 120.53861 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00595 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.46878 * 299.99432 * 13 12 10 39 39 H 1.08997 * 109.47072 * 60.00137 * 13 12 10 40 40 H 1.09000 * 109.46755 * 299.99452 * 14 13 12 41 41 H 1.08997 * 109.47099 * 60.00099 * 14 13 12 42 42 H 1.08995 * 109.47520 * 299.99878 * 15 14 13 43 43 H 1.09003 * 109.47469 * 60.00030 * 15 14 13 44 44 H 1.08991 * 109.47305 * 299.99936 * 16 15 14 45 45 H 1.08997 * 109.46800 * 60.00391 * 16 15 14 46 46 H 1.09007 * 109.47194 * 300.00403 * 17 16 15 47 47 H 1.08998 * 109.47471 * 59.99688 * 17 16 15 48 48 H 1.09007 * 109.46975 * 300.00155 * 18 17 16 49 49 H 1.09006 * 109.47293 * 59.99586 * 18 17 16 50 50 H 0.96994 * 120.00019 * 359.97438 * 19 18 17 51 51 H 0.97001 * 120.00166 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8831 -0.1688 2.4266 6 6 2.3198 -0.7827 3.5087 7 7 2.9205 -1.9556 3.4547 8 6 3.1114 -2.5691 2.3002 9 6 2.6645 -1.9544 1.1248 10 6 2.8544 -2.6012 -0.1908 11 8 1.9991 -2.4976 -1.0482 12 7 3.9761 -3.3058 -0.4396 13 6 4.1646 -3.9464 -1.7436 14 6 5.5090 -4.6766 -1.7636 15 6 5.7055 -5.3461 -3.1252 16 6 7.0502 -6.0758 -3.1454 17 6 7.2470 -6.7448 -4.5072 18 6 8.5913 -7.4750 -4.5272 19 7 8.7801 -8.1151 -5.8314 20 6 9.9193 -8.8318 -6.0839 21 1 10.6788 -8.9249 -5.3218 22 6 10.0983 -9.4378 -7.3198 23 7 9.1730 -9.3240 -8.2489 24 14 11.6526 -10.4149 -7.6645 25 1 11.4419 -11.8330 -7.2776 26 1 11.9740 -10.3392 -9.1124 27 1 12.7777 -9.8490 -6.8776 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 2.1766 -0.3124 4.4703 36 1 3.6039 -3.5296 2.2640 37 1 4.6589 -3.3882 0.2444 38 1 3.3605 -4.6617 -1.9166 39 1 4.1510 -3.1880 -2.5263 40 1 6.3133 -3.9617 -1.5904 41 1 5.5221 -5.4351 -0.9809 42 1 4.9012 -6.0611 -3.2981 43 1 5.6922 -4.5880 -3.9082 44 1 7.8543 -5.3606 -2.9727 45 1 7.0638 -6.8340 -2.3624 46 1 6.4428 -7.4600 -4.6803 47 1 7.2333 -5.9864 -5.2900 48 1 9.3957 -6.7601 -4.3539 49 1 8.6045 -8.2335 -3.7445 50 1 8.0978 -8.0318 -6.5158 51 1 9.2983 -9.7471 -9.1127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180285408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:17 Heat of formation + Delta-G solvation = -33.205494 kcal Electronic energy + Delta-G solvation = -27021.723352 eV Core-core repulsion = 23147.381476 eV Total energy + Delta-G solvation = -3874.341876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.48926 -40.48549 -37.95144 -37.26361 -36.63433 -35.34661 -34.25792 -33.55743 -32.77246 -31.35478 -28.42050 -28.11183 -26.48997 -26.02504 -25.37849 -23.65146 -22.33588 -22.08596 -21.87801 -21.60675 -19.13739 -18.99898 -18.75431 -17.77841 -17.16368 -16.92781 -16.66080 -16.34950 -15.90133 -15.70109 -15.48539 -15.35849 -15.11742 -15.10017 -15.07921 -14.53938 -14.10167 -14.04691 -13.90240 -13.42585 -13.11572 -13.04194 -12.94881 -12.81881 -12.65904 -12.54866 -12.38441 -12.33961 -12.18081 -12.05709 -11.95986 -11.78978 -11.78120 -11.65118 -11.44143 -11.32398 -10.93391 -10.91861 -10.76307 -10.37859 -10.14605 -9.01367 -7.96474 -5.26043 -0.61311 -0.11461 1.46821 1.49226 1.54574 1.57775 1.97564 2.55670 2.60780 2.87035 3.06309 3.19855 3.37022 3.53078 3.72133 3.73094 4.01669 4.03726 4.04999 4.13114 4.15162 4.26518 4.30753 4.35440 4.38561 4.60908 4.61655 4.65925 4.74338 4.79462 4.86013 4.86978 4.89410 4.98833 4.99133 5.04329 5.08213 5.15797 5.17478 5.24742 5.30475 5.30630 5.36806 5.40702 5.48248 5.55288 5.58395 5.77366 6.26302 6.36369 6.90082 7.02674 7.31731 8.09153 8.31745 9.27287 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.001334 C = 0.001296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.067107 B =20986.781890 C =21592.892953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.064 4.064 3 C -0.135 4.135 4 C 0.227 3.773 5 N -0.528 5.528 6 C 0.314 3.686 7 N -0.537 5.537 8 C 0.191 3.809 9 C -0.253 4.253 10 C 0.568 3.432 11 O -0.556 6.556 12 N -0.706 5.706 13 C 0.121 3.879 14 C -0.119 4.119 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.117 4.117 18 C 0.147 3.853 19 N -0.751 5.751 20 C -0.251 4.251 21 H 0.076 0.924 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.977 3.023 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.268 1.268 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.231 0.769 36 H 0.203 0.797 37 H 0.416 0.584 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.373 0.627 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.484 21.625 26.593 38.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.192 4.192 4 C 0.081 3.919 5 N -0.242 5.242 6 C 0.028 3.972 7 N -0.250 5.250 8 C 0.024 3.976 9 C -0.260 4.260 10 C 0.354 3.646 11 O -0.436 6.436 12 N -0.358 5.358 13 C -0.003 4.003 14 C -0.157 4.157 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.155 4.155 18 C 0.021 3.979 19 N -0.394 5.394 20 C -0.383 4.383 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.806 3.194 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.193 1.193 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.220 0.780 37 H 0.253 0.747 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.204 0.796 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.026 22.070 26.939 38.765 hybrid contribution 0.899 -1.191 -1.338 2.004 sum -16.127 20.879 25.601 36.762 Atomic orbital electron populations 1.21629 0.92345 1.01535 1.03004 1.20506 0.97794 0.97044 0.93000 1.21745 1.00491 0.93664 1.03329 1.22038 0.86287 0.89269 0.94343 1.68369 1.20680 1.36384 0.98775 1.25902 0.85967 0.87047 0.98327 1.68567 1.16548 1.11189 1.28710 1.23953 0.89076 0.98903 0.85665 1.21603 1.08290 0.99717 0.96435 1.17915 0.82193 0.78365 0.86166 1.90782 1.43744 1.61301 1.47766 1.45843 1.20264 1.52026 1.17624 1.21436 0.98440 0.96509 0.83884 1.21709 0.95493 1.00154 0.98330 1.21446 0.97019 0.99548 0.97132 1.21420 0.97800 0.99506 0.95472 1.21643 0.95983 0.99012 0.98870 1.20888 0.96103 0.94106 0.86786 1.42668 1.21534 1.61884 1.13304 1.19699 0.97148 1.23601 0.97859 0.90607 1.25633 1.01807 1.03096 0.96419 1.69826 1.36323 1.50420 1.05586 0.85088 0.79211 0.78460 0.76686 1.21227 1.22028 1.19318 0.91875 0.90556 0.93881 0.88665 0.93266 0.90709 0.91406 0.75279 0.78046 0.74684 0.91753 0.91954 0.90069 0.89714 0.91790 0.91918 0.91334 0.91209 0.92725 0.92766 0.96347 0.96285 0.79582 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.18 71.98 0.66 -1.27 16 2 C -0.06 -1.04 2.72 -11.54 -0.03 -1.07 16 3 C -0.13 -1.74 9.02 71.98 0.65 -1.09 16 4 C 0.23 3.73 5.55 42.92 0.24 3.97 16 5 N -0.53 -7.94 9.89 -187.06 -1.85 -9.79 16 6 C 0.31 3.62 12.27 180.84 2.22 5.84 16 7 N -0.54 -6.73 10.42 -198.97 -2.07 -8.80 16 8 C 0.19 2.04 10.64 85.07 0.90 2.95 16 9 C -0.25 -3.70 5.81 -19.91 -0.12 -3.81 16 10 C 0.57 9.45 7.04 86.78 0.61 10.06 16 11 O -0.56 -13.30 14.49 -3.88 -0.06 -13.35 16 12 N -0.71 -7.80 5.49 -465.98 -2.56 -10.36 16 13 C 0.12 1.57 5.67 86.38 0.49 2.06 16 14 C -0.12 -1.29 5.33 30.60 0.16 -1.13 16 15 C -0.11 -1.86 5.21 30.60 0.16 -1.70 16 16 C -0.10 -2.19 5.21 30.60 0.16 -2.03 16 17 C -0.12 -3.62 5.33 30.59 0.16 -3.46 16 18 C 0.15 5.93 6.26 86.38 0.54 6.47 16 19 N -0.75 -39.56 5.60 -343.46 -1.92 -41.49 16 20 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 21 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 23 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 24 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 1.86 5.30 -2.38 -0.01 1.84 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.88 7.92 -2.38 -0.02 0.86 16 35 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.20 0.74 7.77 -2.91 -0.02 0.72 16 37 H 0.42 2.09 7.80 -92.71 -0.72 1.36 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 47 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.37 20.79 7.67 -92.71 -0.71 20.08 16 51 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.56 419.62 1.45 -73.11 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.51 Total: 24.21 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 8.12 Total: -1.86 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -8.12 Total: -130.62 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.06 Total: -13.35 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.56 1.45 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180285408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.901 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds