Wall clock time and date at job start Tue Mar 31 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46880 * 2 1 4 4 C 1.34678 * 126.58864 * 85.02794 * 3 2 1 5 5 N 1.34118 * 108.01976 * 179.97438 * 4 3 2 6 6 C 1.30502 * 109.26068 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.65491 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46660 * 305.02256 * 7 6 5 9 9 O 1.21283 * 120.00343 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00076 * 180.02562 * 8 7 6 11 11 C 1.46935 * 120.62896 * 359.97438 * 10 8 7 12 12 C 1.53193 * 108.77565 * 126.37460 * 11 10 8 13 13 C 1.53037 * 109.31342 * 54.63238 * 12 11 10 14 14 H 1.09002 * 109.46037 * 58.64662 * 13 12 11 15 15 C 1.53001 * 109.45929 * 178.61351 * 13 12 11 16 16 N 1.46490 * 109.47264 * 295.02805 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46685 * 269.99637 * 21 19 17 23 23 H 1.48494 * 109.47357 * 29.99716 * 21 19 17 24 24 H 1.48502 * 109.47120 * 150.00435 * 21 19 17 25 25 C 1.53038 * 109.53037 * 298.63117 * 13 12 11 26 26 H 1.09003 * 109.50020 * 181.32488 * 25 13 12 27 27 C 1.52998 * 109.49528 * 301.41883 * 25 13 12 28 28 C 1.46929 * 120.63609 * 179.97438 * 10 8 7 29 29 N 1.35040 * 108.69720 * 0.26308 * 6 5 4 30 30 H 0.97001 * 126.40238 * 179.74310 * 29 6 5 31 31 H 1.08998 * 109.47030 * 59.99663 * 1 2 3 32 32 H 1.09007 * 109.46563 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47057 * 299.99276 * 1 2 3 34 34 H 1.09003 * 109.47057 * 240.00724 * 2 1 3 35 35 H 1.09000 * 109.47549 * 120.00366 * 2 1 3 36 36 H 1.07996 * 125.98872 * 359.97438 * 4 3 2 37 37 H 1.08992 * 109.47234 * 185.02205 * 7 6 5 38 38 H 1.09004 * 109.47213 * 65.01333 * 7 6 5 39 39 H 1.08995 * 109.58382 * 6.58179 * 11 10 8 40 40 H 1.09003 * 109.58269 * 246.16085 * 11 10 8 41 41 H 1.09005 * 109.49420 * 294.68481 * 12 11 10 42 42 H 1.08994 * 109.49677 * 174.58495 * 12 11 10 43 43 H 1.09003 * 109.46836 * 175.02512 * 15 13 12 44 44 H 1.08999 * 109.47071 * 55.03552 * 15 13 12 45 45 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 46 46 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 47 47 H 1.09002 * 109.47305 * 59.99951 * 27 25 13 48 48 H 1.09009 * 109.47525 * 179.97438 * 27 25 13 49 49 H 1.08997 * 109.47533 * 300.00012 * 27 25 13 50 50 H 1.09006 * 109.58079 * 353.41090 * 28 10 8 51 51 H 1.08993 * 109.58758 * 113.83804 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2115 2.2090 1.0773 5 7 2.6707 3.3951 0.6519 6 6 2.7824 3.3723 -0.6482 7 6 3.2655 4.5114 -1.5084 8 6 2.4356 5.7382 -1.2299 9 8 1.5398 5.6918 -0.4137 10 7 2.6883 6.8865 -1.8887 11 6 3.7698 6.9580 -2.8807 12 6 3.1968 7.4925 -4.1971 13 6 2.4923 8.8261 -3.9380 14 1 3.2021 9.5350 -3.5117 15 6 1.9486 9.3799 -5.2566 16 7 3.0652 9.6978 -6.1501 17 6 2.8205 10.2103 -7.3961 18 1 1.8044 10.3804 -7.7201 19 6 3.8784 10.5111 -8.2430 20 7 5.1168 10.3032 -7.8484 21 14 3.5446 11.2107 -9.9426 22 1 3.4055 10.0987 -10.9170 23 1 2.2894 12.0036 -9.9137 24 1 4.6738 12.0859 -10.3481 25 6 1.3354 8.6119 -2.9594 26 1 0.8194 9.5576 -2.7934 27 6 0.3564 7.5906 -3.5418 28 6 1.8876 8.0906 -1.6286 29 7 2.3883 2.1606 -1.0953 30 1 2.3647 1.8679 -2.0198 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8934 -0.5137 -0.8901 35 1 1.8935 -0.5139 0.8899 36 1 2.0192 1.9340 2.1038 37 1 3.1700 4.2390 -2.5594 38 1 4.3108 4.7207 -1.2808 39 1 4.1856 5.9632 -3.0403 40 1 4.5503 7.6294 -2.5226 41 1 2.4816 6.7755 -4.6002 42 1 4.0059 7.6413 -4.9122 43 1 1.3714 10.2836 -5.0606 44 1 1.3076 8.6344 -5.7271 45 1 3.9778 9.5447 -5.8594 46 1 5.2901 9.9402 -6.9657 47 1 0.8728 6.6448 -3.7061 48 1 -0.4673 7.4379 -2.8442 49 1 -0.0338 7.9608 -4.4898 50 1 1.0614 7.8430 -0.9620 51 1 2.5147 8.8541 -1.1685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184607451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:41 Heat of formation + Delta-G solvation = 19.561189 kcal Electronic energy + Delta-G solvation = -29141.956261 eV Core-core repulsion = 25269.902520 eV Total energy + Delta-G solvation = -3872.053741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.68 seconds Orbital eigenvalues (eV) -42.35368 -40.38804 -38.10956 -35.14118 -34.52936 -33.68259 -32.66518 -32.05164 -31.22298 -30.22854 -27.73842 -26.94124 -26.12535 -23.74601 -23.47448 -23.09307 -21.91453 -21.24820 -20.95353 -19.72354 -18.31828 -17.74811 -17.34399 -17.07615 -15.87721 -15.80321 -15.31107 -14.99448 -14.78215 -14.67534 -14.42618 -14.19353 -13.91372 -13.81417 -13.68820 -13.53369 -13.17045 -13.04090 -12.92246 -12.70559 -12.51604 -12.37756 -12.17905 -11.98307 -11.63553 -11.59594 -11.41390 -11.02446 -10.74332 -10.70140 -10.40379 -10.26252 -10.18863 -10.15257 -10.03193 -9.99624 -9.76628 -9.18904 -8.88265 -8.59857 -8.42971 -7.00473 -6.12343 -3.11375 1.74386 2.58143 2.62851 2.93111 3.16694 3.49911 3.54581 3.68728 4.05578 4.41999 4.44249 4.55900 4.63782 4.66341 4.75740 4.88553 4.90414 4.94990 5.03220 5.06330 5.15154 5.18835 5.21583 5.34369 5.38727 5.43548 5.50970 5.56339 5.59903 5.67224 5.75875 5.78232 5.78785 5.82132 5.91614 5.95999 6.04328 6.14500 6.19613 6.29473 6.34675 6.41851 6.56281 6.57490 6.72114 6.84411 7.09793 7.35564 7.80188 7.95265 8.14819 8.74214 9.22053 10.08226 10.23468 11.36389 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002140 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.016470 B =13083.339334 C =13466.472172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C -0.025 4.025 4 C -0.022 4.022 5 N -0.458 5.458 6 C 0.220 3.780 7 C -0.055 4.055 8 C 0.521 3.479 9 O -0.520 6.520 10 N -0.607 5.607 11 C 0.104 3.896 12 C -0.127 4.127 13 C -0.090 4.090 14 H 0.070 0.930 15 C 0.164 3.836 16 N -0.743 5.743 17 C -0.329 4.329 18 H 0.063 0.937 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.082 2.918 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.288 1.288 25 C -0.098 4.098 26 H 0.081 0.919 27 C -0.143 4.143 28 C 0.119 3.881 29 N -0.562 5.562 30 H 0.416 0.584 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.167 0.833 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.022 0.978 45 H 0.366 0.634 46 H 0.254 0.746 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.061 0.939 50 H 0.090 0.910 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 -19.070 15.418 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.171 4.171 5 N -0.176 5.176 6 C -0.044 4.044 7 C -0.097 4.097 8 C 0.307 3.693 9 O -0.394 6.394 10 N -0.342 5.342 11 C -0.018 4.018 12 C -0.165 4.165 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.037 3.963 16 N -0.389 5.389 17 C -0.460 4.460 18 H 0.081 0.919 19 C -0.244 4.244 20 N -0.591 5.591 21 Si 0.913 3.087 22 H -0.224 1.224 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.117 4.117 26 H 0.100 0.900 27 C -0.200 4.200 28 C -0.003 4.003 29 N -0.166 5.166 30 H 0.253 0.747 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.184 0.816 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.036 0.964 44 H 0.040 0.960 45 H 0.199 0.801 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.109 0.891 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.265 -17.822 14.945 23.847 hybrid contribution -0.642 -1.322 0.363 1.513 sum -5.907 -19.144 15.307 25.213 Atomic orbital electron populations 1.21785 0.94393 1.01858 1.02608 1.19977 0.96086 0.89066 1.03302 1.21236 1.08949 0.96529 0.87290 1.22101 1.06215 0.90118 0.98619 1.70231 1.17486 1.21836 1.08080 1.22232 1.04416 0.86659 0.91098 1.19981 1.01435 0.89550 0.98715 1.20015 0.84478 0.83717 0.81127 1.90749 1.31543 1.83850 1.33303 1.48045 1.34657 1.10685 1.40784 1.21882 0.89131 1.01992 0.88828 1.21965 1.01243 0.97416 0.95912 1.21318 0.96565 0.96563 0.96406 0.91117 1.20647 0.91106 0.96279 0.88318 1.42389 1.03176 1.78349 1.14980 1.20062 0.94632 1.38873 0.92448 0.91861 1.25756 0.92672 1.01376 1.04608 1.70864 1.19189 1.48007 1.21069 0.83201 0.74625 0.76114 0.74755 1.22367 1.22199 1.21384 1.21469 0.96493 0.99339 0.94448 0.90041 1.21842 0.98340 0.98986 1.00869 1.21659 0.95636 0.85823 0.97169 1.43083 1.51373 1.12557 1.09597 0.74679 0.92854 0.92038 0.91986 0.91330 0.89465 0.81570 0.87556 0.86309 0.90137 0.90934 0.91331 0.89848 0.96432 0.96035 0.80069 0.93472 0.92792 0.93292 0.92035 0.89120 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.51 16 2 C -0.05 -0.27 6.49 -27.88 -0.18 -0.45 16 3 C -0.02 -0.23 6.49 -81.60 -0.53 -0.76 16 4 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 5 N -0.46 -6.55 10.58 -10.82 -0.11 -6.67 16 6 C 0.22 2.57 6.96 -155.42 -1.08 1.49 16 7 C -0.06 -0.53 4.67 -29.03 -0.14 -0.66 16 8 C 0.52 6.75 7.69 -10.99 -0.08 6.66 16 9 O -0.52 -8.85 14.96 5.55 0.08 -8.77 16 10 N -0.61 -7.16 2.41 -172.74 -0.42 -7.58 16 11 C 0.10 1.09 6.34 -3.71 -0.02 1.06 16 12 C -0.13 -1.69 4.91 -26.61 -0.13 -1.82 16 13 C -0.09 -1.33 1.96 -90.58 -0.18 -1.51 16 14 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.16 3.19 5.19 -4.05 -0.02 3.16 16 16 N -0.74 -18.11 5.32 -59.91 -0.32 -18.43 16 17 C -0.33 -9.19 9.99 -15.06 -0.15 -9.34 16 18 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 20 N -0.95 -28.71 13.70 55.49 0.76 -27.95 16 21 Si 1.08 25.77 29.92 -169.99 -5.09 20.69 16 22 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.10 -1.25 2.72 -90.49 -0.25 -1.50 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 C -0.14 -1.86 8.38 37.16 0.31 -1.54 16 28 C 0.12 1.47 5.83 -3.69 -0.02 1.45 16 29 N -0.56 -5.05 6.15 -6.54 -0.04 -5.09 16 30 H 0.42 2.41 8.96 -40.82 -0.37 2.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.12 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 42 H 0.08 1.27 7.15 -51.93 -0.37 0.90 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 45 H 0.37 8.97 5.68 -40.82 -0.23 8.74 16 46 H 0.25 7.52 6.77 -40.82 -0.28 7.25 16 47 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 48 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 49 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 50 H 0.09 1.22 7.01 -51.93 -0.36 0.85 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -36.59 397.37 -9.89 -46.48 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.34 Total: 7.49 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.41 Total: -6.17 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.13 Total: -65.71 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.09 Total: 20.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.59 -9.89 -46.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184607451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.042 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.68 seconds