Wall clock time and date at job start Tue Mar 31 2020 18:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46880 * 2 1 4 4 C 1.34678 * 126.58864 * 85.02794 * 3 2 1 5 5 N 1.34118 * 108.01976 * 179.97438 * 4 3 2 6 6 C 1.30502 * 109.26068 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.65491 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46660 * 305.02256 * 7 6 5 9 9 O 1.21283 * 120.00343 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00076 * 180.02562 * 8 7 6 11 11 C 1.46935 * 120.62896 * 359.97438 * 10 8 7 12 12 C 1.53193 * 108.77565 * 126.37460 * 11 10 8 13 13 C 1.53037 * 109.31342 * 54.63238 * 12 11 10 14 14 H 1.09002 * 109.46037 * 58.64662 * 13 12 11 15 15 C 1.53001 * 109.45929 * 178.61351 * 13 12 11 16 16 N 1.46490 * 109.47264 * 295.02805 * 15 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46685 * 269.99637 * 21 19 17 23 23 H 1.48494 * 109.47357 * 29.99716 * 21 19 17 24 24 H 1.48502 * 109.47120 * 150.00435 * 21 19 17 25 25 C 1.53038 * 109.53037 * 298.63117 * 13 12 11 26 26 H 1.09003 * 109.50020 * 181.32488 * 25 13 12 27 27 C 1.52998 * 109.49528 * 301.41883 * 25 13 12 28 28 C 1.46929 * 120.63609 * 179.97438 * 10 8 7 29 29 N 1.35040 * 108.69720 * 0.26308 * 6 5 4 30 30 H 0.97001 * 126.40238 * 179.74310 * 29 6 5 31 31 H 1.08998 * 109.47030 * 59.99663 * 1 2 3 32 32 H 1.09007 * 109.46563 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47057 * 299.99276 * 1 2 3 34 34 H 1.09003 * 109.47057 * 240.00724 * 2 1 3 35 35 H 1.09000 * 109.47549 * 120.00366 * 2 1 3 36 36 H 1.07996 * 125.98872 * 359.97438 * 4 3 2 37 37 H 1.08992 * 109.47234 * 185.02205 * 7 6 5 38 38 H 1.09004 * 109.47213 * 65.01333 * 7 6 5 39 39 H 1.08995 * 109.58382 * 6.58179 * 11 10 8 40 40 H 1.09003 * 109.58269 * 246.16085 * 11 10 8 41 41 H 1.09005 * 109.49420 * 294.68481 * 12 11 10 42 42 H 1.08994 * 109.49677 * 174.58495 * 12 11 10 43 43 H 1.09003 * 109.46836 * 175.02512 * 15 13 12 44 44 H 1.08999 * 109.47071 * 55.03552 * 15 13 12 45 45 H 0.97000 * 120.00577 * 0.02562 * 16 15 13 46 46 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 47 47 H 1.09002 * 109.47305 * 59.99951 * 27 25 13 48 48 H 1.09009 * 109.47525 * 179.97438 * 27 25 13 49 49 H 1.08997 * 109.47533 * 300.00012 * 27 25 13 50 50 H 1.09006 * 109.58079 * 353.41090 * 28 10 8 51 51 H 1.08993 * 109.58758 * 113.83804 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2115 2.2090 1.0773 5 7 2.6707 3.3951 0.6519 6 6 2.7824 3.3723 -0.6482 7 6 3.2655 4.5114 -1.5084 8 6 2.4356 5.7382 -1.2299 9 8 1.5398 5.6918 -0.4137 10 7 2.6883 6.8865 -1.8887 11 6 3.7698 6.9580 -2.8807 12 6 3.1968 7.4925 -4.1971 13 6 2.4923 8.8261 -3.9380 14 1 3.2021 9.5350 -3.5117 15 6 1.9486 9.3799 -5.2566 16 7 3.0652 9.6978 -6.1501 17 6 2.8205 10.2103 -7.3961 18 1 1.8044 10.3804 -7.7201 19 6 3.8784 10.5111 -8.2430 20 7 5.1168 10.3032 -7.8484 21 14 3.5446 11.2107 -9.9426 22 1 3.4055 10.0987 -10.9170 23 1 2.2894 12.0036 -9.9137 24 1 4.6738 12.0859 -10.3481 25 6 1.3354 8.6119 -2.9594 26 1 0.8194 9.5576 -2.7934 27 6 0.3564 7.5906 -3.5418 28 6 1.8876 8.0906 -1.6286 29 7 2.3883 2.1606 -1.0953 30 1 2.3647 1.8679 -2.0198 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8934 -0.5137 -0.8901 35 1 1.8935 -0.5139 0.8899 36 1 2.0192 1.9340 2.1038 37 1 3.1700 4.2390 -2.5594 38 1 4.3108 4.7207 -1.2808 39 1 4.1856 5.9632 -3.0403 40 1 4.5503 7.6294 -2.5226 41 1 2.4816 6.7755 -4.6002 42 1 4.0059 7.6413 -4.9122 43 1 1.3714 10.2836 -5.0606 44 1 1.3076 8.6344 -5.7271 45 1 3.9778 9.5447 -5.8594 46 1 5.2901 9.9402 -6.9657 47 1 0.8728 6.6448 -3.7061 48 1 -0.4673 7.4379 -2.8442 49 1 -0.0338 7.9608 -4.4898 50 1 1.0614 7.8430 -0.9620 51 1 2.5147 8.8541 -1.1685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184607451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:39 Heat of formation + Delta-G solvation = -3.836102 kcal Electronic energy + Delta-G solvation = -29142.970844 eV Core-core repulsion = 25269.902520 eV Total energy + Delta-G solvation = -3873.068323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.11797 -41.41975 -39.27585 -36.80531 -35.15714 -34.98662 -33.56944 -33.25724 -32.04243 -31.84062 -28.57338 -28.34007 -27.17576 -25.41019 -24.29410 -24.20994 -23.23661 -22.15286 -21.76493 -20.66940 -19.65119 -19.07708 -18.51241 -18.09614 -16.87816 -16.77963 -16.64031 -16.13810 -16.03860 -15.63934 -15.38669 -15.34170 -15.15104 -15.01383 -14.60651 -14.49453 -14.32745 -14.17344 -14.02380 -13.69086 -13.54349 -13.41661 -12.97735 -12.77529 -12.66438 -12.65607 -12.49514 -12.43534 -12.11734 -12.04991 -11.89820 -11.76923 -11.44517 -11.41985 -11.13589 -10.96745 -10.90648 -10.86074 -10.76787 -9.62293 -9.18837 -9.06847 -8.37984 -5.31100 0.99820 1.58934 1.63003 1.68956 1.81163 1.83463 2.17006 2.31904 2.71413 3.29504 3.40694 3.54674 3.63801 3.74486 3.82461 3.88911 4.02095 4.02952 4.13171 4.13667 4.23124 4.34260 4.36066 4.42599 4.43794 4.53076 4.59309 4.66770 4.71222 4.72279 4.74750 4.79334 4.81723 4.92751 4.93499 5.01839 5.03594 5.10779 5.13699 5.16899 5.27599 5.32628 5.39556 5.48147 5.59212 5.60556 5.80477 6.36922 6.51252 6.53133 7.12669 7.17083 7.18487 8.03499 8.14118 9.14469 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002140 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.016470 B =13083.339334 C =13466.472172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C -0.009 4.009 4 C -0.059 4.059 5 N -0.506 5.506 6 C 0.204 3.796 7 C -0.051 4.051 8 C 0.518 3.482 9 O -0.566 6.566 10 N -0.604 5.604 11 C 0.110 3.890 12 C -0.121 4.121 13 C -0.079 4.079 14 H 0.066 0.934 15 C 0.164 3.836 16 N -0.752 5.752 17 C -0.334 4.334 18 H 0.060 0.940 19 C -0.103 4.103 20 N -0.973 5.973 21 Si 1.128 2.872 22 H -0.284 1.284 23 H -0.277 1.277 24 H -0.293 1.293 25 C -0.089 4.089 26 H 0.085 0.915 27 C -0.138 4.138 28 C 0.122 3.878 29 N -0.553 5.553 30 H 0.431 0.569 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.174 0.826 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.009 0.991 44 H 0.019 0.981 45 H 0.363 0.637 46 H 0.246 0.754 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.079 0.921 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -20.700 14.850 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.206 4.206 5 N -0.226 5.226 6 C -0.060 4.060 7 C -0.092 4.092 8 C 0.306 3.694 9 O -0.445 6.445 10 N -0.337 5.337 11 C -0.012 4.012 12 C -0.160 4.160 13 C -0.098 4.098 14 H 0.085 0.915 15 C 0.038 3.962 16 N -0.397 5.397 17 C -0.466 4.466 18 H 0.078 0.922 19 C -0.294 4.294 20 N -0.622 5.622 21 Si 0.953 3.047 22 H -0.211 1.211 23 H -0.203 1.203 24 H -0.219 1.219 25 C -0.109 4.109 26 H 0.103 0.897 27 C -0.195 4.195 28 C 0.000 4.000 29 N -0.158 5.158 30 H 0.272 0.728 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.191 0.809 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.196 0.804 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.265 -19.469 14.377 24.768 hybrid contribution -0.729 -0.827 0.588 1.250 sum -5.994 -20.296 14.965 25.919 Atomic orbital electron populations 1.21765 0.94365 1.02782 1.01531 1.20110 0.95905 0.87083 1.04977 1.21701 1.06792 0.97497 0.86611 1.22417 1.07940 0.90336 0.99955 1.70143 1.19077 1.23440 1.09913 1.22511 1.04797 0.87872 0.90831 1.20105 1.01567 0.87283 1.00284 1.20594 0.84029 0.84551 0.80203 1.90734 1.33732 1.84607 1.35382 1.48088 1.34635 1.10297 1.40670 1.21956 0.88503 1.04108 0.86662 1.21864 1.00428 0.96451 0.97211 1.21194 0.97168 0.97234 0.94229 0.91525 1.20764 0.89828 0.95839 0.89748 1.42548 1.04282 1.78152 1.14758 1.20377 0.94476 1.37945 0.93768 0.92152 1.27114 0.92298 1.01971 1.08025 1.70962 1.20223 1.49897 1.21072 0.82611 0.74974 0.75926 0.71203 1.21062 1.20271 1.21893 1.21384 0.95669 0.99640 0.94166 0.89675 1.21780 0.98427 0.98844 1.00429 1.21573 0.95707 0.86406 0.96361 1.43062 1.50455 1.11822 1.10437 0.72812 0.93831 0.90114 0.93172 0.89381 0.88045 0.80908 0.84153 0.84226 0.86698 0.90042 0.91429 0.91748 0.97346 0.96280 0.80385 0.94322 0.92803 0.92919 0.92964 0.90222 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 71.98 0.71 -0.76 16 2 C -0.04 -0.40 6.49 29.85 0.19 -0.20 16 3 C -0.01 -0.16 6.49 40.95 0.27 0.11 16 4 C -0.06 -1.37 11.79 83.53 0.98 -0.38 16 5 N -0.51 -14.52 10.58 -188.14 -1.99 -16.51 16 6 C 0.20 4.52 6.96 138.13 0.96 5.48 16 7 C -0.05 -0.86 4.67 29.10 0.14 -0.72 16 8 C 0.52 12.70 7.69 87.66 0.67 13.37 16 9 O -0.57 -19.27 14.96 -3.04 -0.05 -19.32 16 10 N -0.60 -13.16 2.41 -818.82 -1.97 -15.13 16 11 C 0.11 2.00 6.34 86.36 0.55 2.55 16 12 C -0.12 -3.06 4.91 30.67 0.15 -2.91 16 13 C -0.08 -2.29 1.96 -10.77 -0.02 -2.31 16 14 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 15 C 0.16 6.38 5.19 86.38 0.45 6.82 16 16 N -0.75 -36.83 5.32 -343.47 -1.83 -38.65 16 17 C -0.33 -18.66 9.99 84.03 0.84 -17.82 16 18 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 19 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 20 N -0.97 -59.41 13.70 21.65 0.30 -59.11 16 21 Si 1.13 51.45 29.92 68.60 2.05 53.50 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 C -0.09 -2.20 2.72 -10.71 -0.03 -2.23 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 C -0.14 -3.45 8.38 71.98 0.60 -2.85 16 28 C 0.12 2.88 5.83 86.37 0.50 3.38 16 29 N -0.55 -8.91 6.15 -174.60 -1.07 -9.98 16 30 H 0.43 3.86 8.96 -92.71 -0.83 3.03 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 37 H 0.14 1.32 7.69 -2.39 -0.02 1.30 16 38 H 0.14 1.74 7.94 -2.38 -0.02 1.72 16 39 H 0.11 1.35 5.93 -2.39 -0.01 1.34 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.72 6.33 -2.38 -0.02 1.71 16 42 H 0.06 1.91 7.15 -2.39 -0.02 1.89 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.02 0.76 6.74 -2.39 -0.02 0.75 16 45 H 0.36 18.02 5.68 -92.71 -0.53 17.50 16 46 H 0.25 14.80 6.77 -92.71 -0.63 14.17 16 47 H 0.05 1.34 5.97 -2.39 -0.01 1.33 16 48 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.05 1.39 6.58 -2.39 -0.02 1.38 16 50 H 0.08 2.11 7.01 -2.38 -0.02 2.10 16 51 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -80.72 397.37 2.61 -78.11 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.27 Total: 30.96 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 7.44 Total: -3.87 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -6.56 Total: -139.39 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -80.72 2.61 -78.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184607451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.276 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds