Wall clock time and date at job start Tue Mar 31 2020 19:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47164 * 2 1 4 4 C 1.50701 * 109.47460 * 180.02562 * 3 2 1 5 5 N 1.30440 * 125.98737 * 270.04834 * 4 3 2 6 6 N 1.39937 * 108.89378 * 179.97438 * 5 4 3 7 7 H 0.97006 * 125.75520 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.49381 * 359.75060 * 6 5 4 9 9 C 1.38043 * 107.41150 * 0.39123 * 8 6 5 10 10 C 1.47433 * 126.41207 * 179.87165 * 9 8 6 11 11 O 1.21598 * 119.99993 * 139.39251 * 10 9 8 12 12 N 1.34775 * 119.99545 * 319.39372 * 10 9 8 13 13 C 1.46922 * 120.63571 * 354.36105 * 12 10 9 14 14 C 1.53195 * 108.77600 * 233.58902 * 13 12 10 15 15 C 1.53041 * 109.31307 * 305.36416 * 14 13 12 16 16 H 1.09005 * 109.45645 * 301.35704 * 15 14 13 17 17 C 1.52997 * 109.46346 * 181.38633 * 15 14 13 18 18 N 1.46501 * 109.47167 * 64.99611 * 17 15 14 19 19 C 1.36933 * 120.00209 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00066 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00080 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47298 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.46768 * 300.00230 * 23 21 19 26 26 H 1.48501 * 109.46884 * 59.99981 * 23 21 19 27 27 C 1.53038 * 109.54227 * 61.36176 * 15 14 13 28 28 H 1.08993 * 109.50265 * 178.68617 * 27 15 14 29 29 C 1.53005 * 109.49402 * 58.58587 * 27 15 14 30 30 C 1.46935 * 120.62929 * 174.33789 * 12 10 9 31 31 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46838 * 299.99594 * 1 2 3 33 33 H 1.08994 * 109.47580 * 59.99800 * 1 2 3 34 34 H 1.08997 * 109.46610 * 240.00816 * 2 1 3 35 35 H 1.08999 * 109.47151 * 120.00364 * 2 1 3 36 36 H 1.09009 * 109.46911 * 60.00451 * 3 2 1 37 37 H 1.09007 * 109.47343 * 300.00561 * 3 2 1 38 38 H 1.08001 * 126.29061 * 180.24016 * 8 6 5 39 39 H 1.08992 * 109.59036 * 113.80152 * 13 12 10 40 40 H 1.09001 * 109.70243 * 353.44159 * 13 12 10 41 41 H 1.09000 * 109.49743 * 185.41284 * 14 13 12 42 42 H 1.09000 * 109.52794 * 65.32770 * 14 13 12 43 43 H 1.08998 * 109.47270 * 304.99986 * 17 15 14 44 44 H 1.09003 * 109.47410 * 184.99718 * 17 15 14 45 45 H 0.97005 * 119.99903 * 0.02562 * 18 17 15 46 46 H 0.96997 * 119.99871 * 0.02562 * 22 21 19 47 47 H 1.08998 * 109.46697 * 60.00652 * 29 27 15 48 48 H 1.08998 * 109.47183 * 180.02562 * 29 27 15 49 49 H 1.08999 * 109.47160 * 300.00703 * 29 27 15 50 50 H 1.08998 * 109.58537 * 246.20551 * 30 12 10 51 51 H 1.09003 * 109.58366 * 6.62628 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3139 1.4415 1.0545 6 7 5.6513 1.4414 0.6426 7 1 6.4248 1.4411 1.2281 8 6 5.6836 1.4368 -0.6996 9 6 4.3767 1.4430 -1.1442 10 6 3.9303 1.4437 -2.5494 11 8 2.9808 0.7628 -2.8860 12 7 4.5748 2.1991 -3.4607 13 6 5.6433 3.1198 -3.0492 14 6 5.3218 4.5188 -3.5841 15 6 5.1042 4.4446 -5.0971 16 1 6.0003 4.0472 -5.5737 17 6 4.8168 5.8458 -5.6401 18 7 5.9993 6.6916 -5.4595 19 6 5.9776 7.9966 -5.8737 20 1 5.0884 8.4025 -6.3332 21 6 7.0982 8.7977 -5.7030 22 7 8.1819 8.3029 -5.1435 23 14 7.0682 10.5783 -6.2674 24 1 8.3786 11.2125 -5.9745 25 1 6.8094 10.6299 -7.7287 26 1 5.9930 11.3074 -5.5481 27 6 3.9169 3.5274 -5.3992 28 1 3.7479 3.4935 -6.4754 29 6 2.6658 4.0653 -4.7018 30 6 4.2225 2.1171 -4.8849 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8932 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6766 1.9564 -0.8900 38 1 6.5692 1.4319 -1.3178 39 1 6.5949 2.7817 -3.4591 40 1 5.7039 3.1495 -1.9613 41 1 6.1527 5.1905 -3.3685 42 1 4.4174 4.8933 -3.1045 43 1 3.9746 6.2790 -5.1006 44 1 4.5745 5.7818 -6.7010 45 1 6.7981 6.3269 -5.0471 46 1 8.1976 7.3783 -4.8508 47 1 2.4504 5.0698 -5.0659 48 1 1.8205 3.4115 -4.9168 49 1 2.8352 4.0976 -3.6255 50 1 5.0584 1.6972 -5.4444 51 1 3.3432 1.4848 -5.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184711382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:24 Heat of formation + Delta-G solvation = 31.981119 kcal Electronic energy + Delta-G solvation = -29950.008333 eV Core-core repulsion = 26078.493161 eV Total energy + Delta-G solvation = -3871.515172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78145 -40.03595 -37.91377 -35.50021 -35.03039 -33.62943 -31.96192 -31.81264 -30.49491 -30.18700 -27.38036 -26.95459 -26.51310 -23.83009 -23.16541 -22.73837 -22.14622 -21.46484 -20.59017 -19.57914 -18.68240 -17.83164 -17.27035 -16.76654 -15.75391 -15.65593 -15.29800 -15.04715 -14.73538 -14.60387 -14.55775 -14.11262 -13.82043 -13.70898 -13.57370 -13.38836 -13.11520 -12.90878 -12.80008 -12.44798 -12.25770 -12.21055 -11.71818 -11.60573 -11.44909 -11.41807 -11.16985 -10.98563 -10.71810 -10.71673 -10.68621 -10.37358 -10.22582 -10.17109 -9.95232 -9.85369 -9.73681 -9.17143 -8.98551 -8.86695 -8.54718 -6.99183 -6.11207 -3.09918 1.31900 1.99380 2.40994 2.90790 3.20129 3.51092 3.54451 3.71744 4.19803 4.37940 4.65185 4.67523 4.79579 4.80583 4.94481 4.96630 5.00554 5.07962 5.12209 5.16675 5.22094 5.35565 5.41359 5.51786 5.56463 5.61637 5.63520 5.69593 5.71635 5.77431 5.80391 5.84494 5.87921 5.94273 6.00912 6.10528 6.16710 6.19118 6.24113 6.25160 6.34694 6.39544 6.48095 6.60742 6.74423 6.81254 6.87727 7.26799 7.42813 7.81005 8.20465 8.75350 9.23370 10.09600 10.24944 11.37584 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.002688 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.442715 B =10413.411859 C =11034.544021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.039 4.039 4 C 0.133 3.867 5 N -0.296 5.296 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.100 3.900 9 C -0.279 4.279 10 C 0.595 3.405 11 O -0.540 6.540 12 N -0.602 5.602 13 C 0.101 3.899 14 C -0.126 4.126 15 C -0.089 4.089 16 H 0.069 0.931 17 C 0.164 3.836 18 N -0.743 5.743 19 C -0.328 4.328 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.946 5.946 23 Si 1.079 2.921 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.296 1.296 27 C -0.098 4.098 28 H 0.081 0.919 29 C -0.144 4.144 30 C 0.119 3.881 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.187 0.813 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.018 0.982 45 H 0.366 0.634 46 H 0.253 0.747 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.065 0.935 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 -18.243 9.805 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.079 4.079 4 C -0.035 4.035 5 N -0.118 5.118 6 N -0.167 5.167 7 H 0.289 0.711 8 C -0.052 4.052 9 C -0.294 4.294 10 C 0.383 3.617 11 O -0.417 6.417 12 N -0.335 5.335 13 C -0.022 4.022 14 C -0.164 4.164 15 C -0.108 4.108 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.389 5.389 19 C -0.459 4.459 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.592 5.592 23 Si 0.910 3.090 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.117 4.117 28 H 0.099 0.901 29 C -0.201 4.201 30 C -0.003 4.003 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.204 0.796 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.199 0.801 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.833 -17.091 10.685 21.625 hybrid contribution 0.075 -1.333 -0.441 1.406 sum -7.758 -18.424 10.243 22.462 Atomic orbital electron populations 1.21737 0.95433 1.01655 1.01818 1.21419 0.95838 0.95255 1.02717 1.20103 0.85465 0.98801 1.03504 1.22386 0.96911 0.95557 0.88683 1.77143 0.86251 1.26063 1.22376 1.46107 1.07803 1.57342 1.05424 0.71131 1.23191 0.98966 0.97456 0.85555 1.20233 0.92276 1.22245 0.94644 1.17273 0.81878 0.79005 0.83523 1.90740 1.27617 1.42989 1.80384 1.47929 1.37210 1.40918 1.07413 1.22001 0.89717 0.89972 1.00462 1.21944 1.03179 0.95175 0.96103 1.21319 0.97488 0.96566 0.95428 0.91259 1.20653 0.90726 0.88161 0.96823 1.42388 1.12210 1.09898 1.74393 1.20035 1.00913 0.88244 1.36716 0.91890 1.25744 0.92514 1.05456 1.00662 1.70895 1.28668 1.15982 1.43640 0.83253 0.75537 0.74745 0.75483 1.21056 1.22295 1.22302 1.21458 0.95901 0.94062 1.00320 0.90086 1.21846 0.96401 1.01000 1.00850 1.21670 1.01428 0.97441 0.79760 0.92702 0.92911 0.92394 0.90562 0.92317 0.90384 0.89542 0.79643 0.91421 0.89778 0.90070 0.91246 0.95973 0.96435 0.80109 0.93555 0.92123 0.93160 0.92589 0.91642 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 3 C -0.04 -0.43 5.29 -27.88 -0.15 -0.57 16 4 C 0.13 1.59 6.51 -82.02 -0.53 1.05 16 5 N -0.30 -3.41 12.63 33.89 0.43 -2.98 16 6 N -0.46 -3.83 7.29 30.85 0.22 -3.61 16 7 H 0.44 2.11 8.96 -182.71 -1.64 0.47 16 8 C 0.10 0.86 9.64 -16.56 -0.16 0.70 16 9 C -0.28 -3.24 5.21 -105.07 -0.55 -3.79 16 10 C 0.59 7.79 7.33 -12.52 -0.09 7.70 16 11 O -0.54 -8.39 15.47 5.28 0.08 -8.31 16 12 N -0.60 -7.13 2.41 -174.03 -0.42 -7.55 16 13 C 0.10 1.11 5.47 -3.71 -0.02 1.09 16 14 C -0.13 -1.78 4.91 -26.61 -0.13 -1.91 16 15 C -0.09 -1.34 1.96 -90.58 -0.18 -1.51 16 16 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 17 C 0.16 3.22 5.18 -4.04 -0.02 3.20 16 18 N -0.74 -18.29 5.32 -59.91 -0.32 -18.61 16 19 C -0.33 -9.23 9.99 -15.06 -0.15 -9.38 16 20 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 21 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 22 N -0.95 -28.86 13.70 55.49 0.76 -28.10 16 23 Si 1.08 25.86 29.92 -169.99 -5.09 20.77 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.30 -6.79 7.11 56.52 0.40 -6.38 16 27 C -0.10 -1.25 2.72 -90.50 -0.25 -1.49 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 C -0.14 -1.90 8.38 37.16 0.31 -1.59 16 30 C 0.12 1.41 5.84 -3.71 -0.02 1.38 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.09 1.00 7.81 -51.93 -0.41 0.60 16 38 H 0.19 1.00 7.35 -52.49 -0.39 0.61 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.84 4.83 -51.93 -0.25 0.59 16 41 H 0.08 1.30 7.15 -51.93 -0.37 0.93 16 42 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 43 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.37 9.05 5.68 -40.82 -0.23 8.82 16 46 H 0.25 7.54 6.77 -40.82 -0.28 7.26 16 47 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.78 5.97 -51.93 -0.31 0.47 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -34.64 394.06 -9.72 -44.36 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -9.51 Total: 6.86 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.82 Total: -8.77 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.68 Total: -60.86 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.64 -9.72 -44.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184711382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.344 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds