Wall clock time and date at job start Tue Mar 31 2020 19:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47164 * 2 1 4 4 C 1.50701 * 109.47460 * 180.02562 * 3 2 1 5 5 N 1.30440 * 125.98737 * 270.04834 * 4 3 2 6 6 N 1.39937 * 108.89378 * 179.97438 * 5 4 3 7 7 H 0.97006 * 125.75520 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.49381 * 359.75060 * 6 5 4 9 9 C 1.38043 * 107.41150 * 0.39123 * 8 6 5 10 10 C 1.47433 * 126.41207 * 179.87165 * 9 8 6 11 11 O 1.21598 * 119.99993 * 139.39251 * 10 9 8 12 12 N 1.34775 * 119.99545 * 319.39372 * 10 9 8 13 13 C 1.46922 * 120.63571 * 354.36105 * 12 10 9 14 14 C 1.53195 * 108.77600 * 233.58902 * 13 12 10 15 15 C 1.53041 * 109.31307 * 305.36416 * 14 13 12 16 16 H 1.09005 * 109.45645 * 301.35704 * 15 14 13 17 17 C 1.52997 * 109.46346 * 181.38633 * 15 14 13 18 18 N 1.46501 * 109.47167 * 64.99611 * 17 15 14 19 19 C 1.36933 * 120.00209 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00066 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00080 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47298 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.46768 * 300.00230 * 23 21 19 26 26 H 1.48501 * 109.46884 * 59.99981 * 23 21 19 27 27 C 1.53038 * 109.54227 * 61.36176 * 15 14 13 28 28 H 1.08993 * 109.50265 * 178.68617 * 27 15 14 29 29 C 1.53005 * 109.49402 * 58.58587 * 27 15 14 30 30 C 1.46935 * 120.62929 * 174.33789 * 12 10 9 31 31 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46838 * 299.99594 * 1 2 3 33 33 H 1.08994 * 109.47580 * 59.99800 * 1 2 3 34 34 H 1.08997 * 109.46610 * 240.00816 * 2 1 3 35 35 H 1.08999 * 109.47151 * 120.00364 * 2 1 3 36 36 H 1.09009 * 109.46911 * 60.00451 * 3 2 1 37 37 H 1.09007 * 109.47343 * 300.00561 * 3 2 1 38 38 H 1.08001 * 126.29061 * 180.24016 * 8 6 5 39 39 H 1.08992 * 109.59036 * 113.80152 * 13 12 10 40 40 H 1.09001 * 109.70243 * 353.44159 * 13 12 10 41 41 H 1.09000 * 109.49743 * 185.41284 * 14 13 12 42 42 H 1.09000 * 109.52794 * 65.32770 * 14 13 12 43 43 H 1.08998 * 109.47270 * 304.99986 * 17 15 14 44 44 H 1.09003 * 109.47410 * 184.99718 * 17 15 14 45 45 H 0.97005 * 119.99903 * 0.02562 * 18 17 15 46 46 H 0.96997 * 119.99871 * 0.02562 * 22 21 19 47 47 H 1.08998 * 109.46697 * 60.00652 * 29 27 15 48 48 H 1.08998 * 109.47183 * 180.02562 * 29 27 15 49 49 H 1.08999 * 109.47160 * 300.00703 * 29 27 15 50 50 H 1.08998 * 109.58537 * 246.20551 * 30 12 10 51 51 H 1.09003 * 109.58366 * 6.62628 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3139 1.4415 1.0545 6 7 5.6513 1.4414 0.6426 7 1 6.4248 1.4411 1.2281 8 6 5.6836 1.4368 -0.6996 9 6 4.3767 1.4430 -1.1442 10 6 3.9303 1.4437 -2.5494 11 8 2.9808 0.7628 -2.8860 12 7 4.5748 2.1991 -3.4607 13 6 5.6433 3.1198 -3.0492 14 6 5.3218 4.5188 -3.5841 15 6 5.1042 4.4446 -5.0971 16 1 6.0003 4.0472 -5.5737 17 6 4.8168 5.8458 -5.6401 18 7 5.9993 6.6916 -5.4595 19 6 5.9776 7.9966 -5.8737 20 1 5.0884 8.4025 -6.3332 21 6 7.0982 8.7977 -5.7030 22 7 8.1819 8.3029 -5.1435 23 14 7.0682 10.5783 -6.2674 24 1 8.3786 11.2125 -5.9745 25 1 6.8094 10.6299 -7.7287 26 1 5.9930 11.3074 -5.5481 27 6 3.9169 3.5274 -5.3992 28 1 3.7479 3.4935 -6.4754 29 6 2.6658 4.0653 -4.7018 30 6 4.2225 2.1171 -4.8849 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8932 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6766 1.9564 -0.8900 38 1 6.5692 1.4319 -1.3178 39 1 6.5949 2.7817 -3.4591 40 1 5.7039 3.1495 -1.9613 41 1 6.1527 5.1905 -3.3685 42 1 4.4174 4.8933 -3.1045 43 1 3.9746 6.2790 -5.1006 44 1 4.5745 5.7818 -6.7010 45 1 6.7981 6.3269 -5.0471 46 1 8.1976 7.3783 -4.8508 47 1 2.4504 5.0698 -5.0659 48 1 1.8205 3.4115 -4.9168 49 1 2.8352 4.0976 -3.6255 50 1 5.0584 1.6972 -5.4444 51 1 3.3432 1.4848 -5.0079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184711382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:21 Heat of formation + Delta-G solvation = 10.206831 kcal Electronic energy + Delta-G solvation = -29950.952537 eV Core-core repulsion = 26078.493161 eV Total energy + Delta-G solvation = -3872.459376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.58681 -41.05684 -39.06454 -36.82396 -36.18154 -34.97460 -33.33277 -32.58866 -31.84152 -31.33310 -28.34155 -28.18429 -27.63169 -25.52314 -24.49066 -23.79173 -22.98215 -22.69661 -21.51183 -20.43841 -19.82466 -19.26669 -18.65678 -17.80375 -16.78524 -16.68483 -16.53590 -16.12455 -16.03219 -15.63954 -15.59529 -15.38477 -15.33218 -14.82060 -14.79458 -14.37754 -14.24111 -14.06042 -13.94876 -13.63745 -13.49160 -12.99195 -12.78677 -12.69008 -12.63395 -12.50394 -12.44309 -12.18202 -12.09721 -11.98724 -11.90499 -11.74457 -11.50902 -11.43648 -11.38958 -11.12090 -10.89791 -10.85630 -10.52343 -9.83060 -9.51812 -9.07109 -8.38421 -5.31249 0.58554 1.10832 1.58706 1.67954 1.73035 1.84598 1.99664 2.28531 2.71384 3.38414 3.40454 3.62475 3.68333 3.71335 3.78696 3.93876 4.07101 4.07632 4.16657 4.18361 4.24993 4.33042 4.38036 4.39163 4.44501 4.58121 4.62235 4.69395 4.77541 4.80170 4.81027 4.82293 4.84442 4.94320 4.96219 5.03815 5.10311 5.12537 5.16190 5.20364 5.29515 5.33243 5.38485 5.43646 5.50368 5.59837 5.63958 6.23863 6.41709 6.52896 6.54871 7.12570 7.23773 8.03337 8.14050 9.14174 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.002688 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.442715 B =10413.411859 C =11034.544021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.039 4.039 4 C 0.119 3.881 5 N -0.319 5.319 6 N -0.448 5.448 7 H 0.460 0.540 8 C 0.124 3.876 9 C -0.311 4.311 10 C 0.596 3.404 11 O -0.571 6.571 12 N -0.599 5.599 13 C 0.110 3.890 14 C -0.120 4.120 15 C -0.077 4.077 16 H 0.072 0.928 17 C 0.164 3.836 18 N -0.752 5.752 19 C -0.335 4.335 20 H 0.060 0.940 21 C -0.102 4.102 22 N -0.974 5.974 23 Si 1.125 2.875 24 H -0.291 1.291 25 H -0.279 1.279 26 H -0.280 1.280 27 C -0.090 4.090 28 H 0.090 0.910 29 C -0.138 4.138 30 C 0.123 3.877 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.223 0.777 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.012 0.988 45 H 0.363 0.637 46 H 0.246 0.754 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.045 0.955 50 H 0.085 0.915 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 -18.921 10.028 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.078 4.078 4 C -0.049 4.049 5 N -0.142 5.142 6 N -0.154 5.154 7 H 0.308 0.692 8 C -0.030 4.030 9 C -0.326 4.326 10 C 0.385 3.615 11 O -0.451 6.451 12 N -0.331 5.331 13 C -0.013 4.013 14 C -0.159 4.159 15 C -0.096 4.096 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.398 5.398 19 C -0.466 4.466 20 H 0.078 0.922 21 C -0.293 4.293 22 N -0.622 5.622 23 Si 0.950 3.050 24 H -0.217 1.217 25 H -0.205 1.205 26 H -0.207 1.207 27 C -0.110 4.110 28 H 0.109 0.891 29 C -0.195 4.195 30 C 0.000 4.000 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.240 0.760 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.196 0.804 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.103 0.897 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.322 -17.792 10.925 22.125 hybrid contribution -0.112 -1.134 -0.500 1.245 sum -7.434 -18.927 10.425 22.851 Atomic orbital electron populations 1.21720 0.94229 1.02317 1.02070 1.21326 0.96847 0.94631 1.01655 1.20085 0.85534 0.99058 1.03129 1.22541 0.97365 0.95842 0.89110 1.77082 0.87573 1.26932 1.22643 1.46145 1.07463 1.55946 1.05829 0.69155 1.23658 0.98968 0.94686 0.85677 1.20253 0.93670 1.24894 0.93806 1.17472 0.81334 0.78540 0.84115 1.90721 1.28998 1.44398 1.80960 1.47935 1.37198 1.40631 1.07323 1.22006 0.90247 0.87685 1.01337 1.21833 1.01676 0.96973 0.95397 1.21191 0.98549 0.93997 0.95861 0.90947 1.20774 0.88766 0.90164 0.96532 1.42547 1.13524 1.09516 1.74168 1.20360 1.00656 0.89815 1.35797 0.92181 1.27103 0.92266 1.09089 1.00847 1.70990 1.29750 1.15869 1.45559 0.82660 0.75561 0.70684 0.76121 1.21712 1.20527 1.20657 1.21407 0.94445 0.94207 1.00933 0.89144 1.21779 0.97088 1.00542 1.00138 1.21655 1.02082 0.96277 0.79941 0.91846 0.91751 0.93013 0.92684 0.92122 0.89602 0.90915 0.76020 0.88976 0.88386 0.92107 0.92657 0.96786 0.96965 0.80402 0.94369 0.93291 0.92328 0.93604 0.89721 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 3 C -0.04 -0.85 5.29 29.85 0.16 -0.69 16 4 C 0.12 2.78 6.51 43.52 0.28 3.06 16 5 N -0.32 -6.97 12.63 -46.68 -0.59 -7.56 16 6 N -0.45 -6.35 7.29 -56.31 -0.41 -6.76 16 7 H 0.46 3.08 8.96 -213.42 -1.91 1.17 16 8 C 0.12 1.76 9.64 84.27 0.81 2.57 16 9 C -0.31 -6.81 5.21 -20.15 -0.11 -6.92 16 10 C 0.60 15.01 7.33 86.67 0.64 15.64 16 11 O -0.57 -17.71 15.47 -4.03 -0.06 -17.77 16 12 N -0.60 -13.13 2.41 -822.77 -1.98 -15.11 16 13 C 0.11 2.15 5.47 86.36 0.47 2.63 16 14 C -0.12 -3.31 4.91 30.67 0.15 -3.16 16 15 C -0.08 -2.24 1.96 -10.77 -0.02 -2.26 16 16 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 17 C 0.16 6.45 5.18 86.38 0.45 6.90 16 18 N -0.75 -37.27 5.32 -343.45 -1.83 -39.09 16 19 C -0.33 -18.88 9.99 84.03 0.84 -18.04 16 20 H 0.06 3.36 7.83 -2.91 -0.02 3.33 16 21 C -0.10 -5.85 5.50 84.86 0.47 -5.39 16 22 N -0.97 -59.71 13.70 21.65 0.30 -59.41 16 23 Si 1.12 51.71 29.92 68.60 2.05 53.76 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 C -0.09 -2.19 2.72 -10.71 -0.03 -2.22 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 C -0.14 -3.60 8.38 71.98 0.60 -3.00 16 30 C 0.12 2.66 5.84 86.36 0.50 3.16 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.07 1.76 7.81 -2.38 -0.02 1.74 16 38 H 0.22 1.40 7.35 -2.91 -0.02 1.38 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.68 4.83 -2.39 -0.01 1.67 16 41 H 0.06 1.94 7.15 -2.39 -0.02 1.92 16 42 H 0.05 1.67 6.34 -2.39 -0.02 1.65 16 43 H 0.01 0.59 6.74 -2.39 -0.02 0.57 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.36 18.17 5.68 -92.70 -0.53 17.64 16 46 H 0.25 14.83 6.77 -92.71 -0.63 14.20 16 47 H 0.05 1.37 6.58 -2.39 -0.02 1.35 16 48 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.04 1.28 5.97 -2.39 -0.01 1.27 16 50 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.09 2.05 7.00 -2.39 -0.02 2.04 16 Total: -1.00 -75.35 394.06 2.24 -73.11 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -1.35 Total: 30.24 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 6.11 Total: -11.40 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -4.51 Total: -127.94 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.06 Total: -17.77 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.76 kcal Total: -75.35 2.24 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184711382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.316 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds