Wall clock time and date at job start Tue Mar 31 2020 19:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 C 1.50697 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.30451 * 125.98982 * 270.04264 * 4 3 2 6 6 N 1.39939 * 108.89640 * 179.97438 * 5 4 3 7 7 H 0.96998 * 125.74902 * 179.97438 * 6 5 4 8 8 C 1.34263 * 108.48980 * 359.74957 * 6 5 4 9 9 C 1.38042 * 107.41708 * 0.39563 * 8 6 5 10 10 C 1.47428 * 126.41143 * 179.86952 * 9 8 6 11 11 O 1.21605 * 119.99844 * 139.71552 * 10 9 8 12 12 N 1.34773 * 120.00312 * 319.71112 * 10 9 8 13 13 C 1.46922 * 120.63119 * 354.50767 * 12 10 9 14 14 C 1.53192 * 108.78021 * 233.58540 * 13 12 10 15 15 C 1.53039 * 109.31212 * 305.36747 * 14 13 12 16 16 H 1.09006 * 109.45905 * 301.34086 * 15 14 13 17 17 C 1.52996 * 109.44728 * 181.37761 * 15 14 13 18 18 N 1.46503 * 109.47699 * 64.96321 * 17 15 14 19 19 C 1.36925 * 120.00329 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00641 * 359.97438 * 19 18 17 21 21 C 1.38821 * 119.99987 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00096 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46895 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46681 * 119.99506 * 23 21 19 26 26 H 1.48493 * 109.47052 * 239.99984 * 23 21 19 27 27 C 1.53036 * 109.53936 * 61.36023 * 15 14 13 28 28 H 1.08999 * 109.49499 * 58.58939 * 27 15 14 29 29 C 1.53002 * 109.49495 * 178.68285 * 27 15 14 30 30 C 1.46925 * 120.63243 * 174.48656 * 12 10 9 31 31 H 1.09001 * 109.46938 * 300.00521 * 1 2 3 32 32 H 1.09003 * 109.46936 * 59.99794 * 1 2 3 33 33 H 1.08998 * 109.47581 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46704 * 239.99956 * 2 1 3 35 35 H 1.09003 * 109.46936 * 120.00206 * 2 1 3 36 36 H 1.08997 * 109.46894 * 60.00163 * 3 2 1 37 37 H 1.09003 * 109.47293 * 299.99988 * 3 2 1 38 38 H 1.07996 * 126.28667 * 180.23861 * 8 6 5 39 39 H 1.09005 * 109.58389 * 353.37785 * 13 12 10 40 40 H 1.09005 * 109.58712 * 113.79377 * 13 12 10 41 41 H 1.09006 * 109.49600 * 185.41117 * 14 13 12 42 42 H 1.09002 * 109.49472 * 65.31896 * 14 13 12 43 43 H 1.09006 * 109.47332 * 184.96541 * 17 15 14 44 44 H 1.08996 * 109.47321 * 304.96036 * 17 15 14 45 45 H 0.97003 * 119.99410 * 0.02562 * 18 17 15 46 46 H 0.97002 * 120.00201 * 180.02562 * 22 21 19 47 47 H 1.08995 * 109.47349 * 60.00560 * 29 27 15 48 48 H 1.09009 * 109.46891 * 180.02562 * 29 27 15 49 49 H 1.08998 * 109.47499 * 299.99557 * 29 27 15 50 50 H 1.09000 * 109.58818 * 6.62342 * 30 12 10 51 51 H 1.09004 * 109.70389 * 246.27051 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3132 1.4417 1.0565 6 7 5.6509 1.4413 0.6457 7 1 6.4237 1.4411 1.2319 8 6 5.6842 1.4362 -0.6965 9 6 4.3778 1.4424 -1.1422 10 6 3.9327 1.4427 -2.5477 11 8 2.9796 0.7662 -2.8838 12 7 4.5819 2.1926 -3.4601 13 6 5.6572 3.1059 -3.0501 14 6 5.3455 4.5068 -3.5859 15 6 5.1265 4.4328 -5.0988 16 1 6.0195 4.0287 -5.5756 17 6 4.8489 5.8357 -5.6424 18 7 6.0372 6.6734 -5.4624 19 6 6.0240 7.9785 -5.8763 20 1 5.1377 8.3905 -6.3358 21 6 7.1502 8.7721 -5.7061 22 7 8.2306 8.2701 -5.1465 23 14 7.1325 10.5525 -6.2714 24 1 5.8086 10.8703 -6.8645 25 1 7.3816 11.4431 -5.1095 26 1 8.1931 10.7590 -7.2899 27 6 3.9325 3.5239 -5.3992 28 1 3.0443 3.9140 -4.9023 29 6 3.6941 3.4768 -6.9098 30 6 4.2282 2.1119 -4.8839 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6768 1.9564 -0.8900 38 1 6.5703 1.4309 -1.3139 39 1 5.7163 3.1356 -1.9620 40 1 6.6063 2.7605 -3.4602 41 1 6.1815 5.1727 -3.3714 42 1 4.4440 4.8876 -3.1060 43 1 4.6060 5.7728 -6.7032 44 1 4.0097 6.2749 -5.1031 45 1 6.8334 6.3034 -5.0500 46 1 9.0174 8.8247 -5.0272 47 1 4.5822 3.0853 -7.4058 48 1 2.8432 2.8297 -7.1234 49 1 3.4864 4.4821 -7.2765 50 1 3.3443 1.4858 -5.0060 51 1 5.0590 1.6846 -5.4454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184711391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:33 Heat of formation + Delta-G solvation = 28.634365 kcal Electronic energy + Delta-G solvation = -29627.300139 eV Core-core repulsion = 25755.639840 eV Total energy + Delta-G solvation = -3871.660298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73588 -39.84482 -37.81522 -35.46162 -34.88054 -33.62328 -31.99224 -31.79379 -30.62442 -30.25289 -27.36038 -26.89402 -26.49636 -24.05938 -22.97826 -22.14411 -22.07812 -21.27491 -20.48809 -19.68415 -19.30648 -17.77884 -17.16486 -16.61684 -15.90410 -15.46919 -15.17679 -14.91307 -14.65625 -14.60235 -14.37237 -13.97762 -13.87496 -13.66351 -13.45299 -13.25335 -13.00881 -12.81241 -12.54195 -12.41171 -12.20958 -11.89311 -11.81057 -11.68562 -11.59057 -11.39840 -11.14586 -10.99769 -10.88506 -10.81519 -10.66004 -10.36351 -10.25980 -10.16236 -9.95309 -9.82894 -9.69896 -9.63185 -8.94957 -8.86986 -8.50312 -6.90886 -5.78245 -3.05556 1.35371 2.02478 2.44428 2.94653 3.24193 3.42025 3.48203 3.49986 4.23353 4.41775 4.58024 4.72961 4.82935 4.88164 4.97088 4.97888 5.05715 5.13987 5.15503 5.19781 5.33221 5.39473 5.48064 5.53894 5.57539 5.59943 5.66127 5.72172 5.73525 5.82672 5.88444 5.90602 5.94399 6.01040 6.09182 6.13062 6.20849 6.26598 6.27029 6.32295 6.36132 6.50554 6.55268 6.66161 6.84416 6.85281 6.95312 7.30198 7.46892 7.70159 8.23853 8.41466 9.52745 10.11421 10.45981 11.44953 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002672 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.256601 B =10477.952126 C =11287.077030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.039 4.039 4 C 0.133 3.867 5 N -0.297 5.297 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.101 3.899 9 C -0.279 4.279 10 C 0.594 3.406 11 O -0.541 6.541 12 N -0.605 5.605 13 C 0.101 3.899 14 C -0.125 4.125 15 C -0.088 4.088 16 H 0.071 0.929 17 C 0.156 3.844 18 N -0.732 5.732 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.097 4.097 28 H 0.073 0.927 29 C -0.147 4.147 30 C 0.120 3.880 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.187 0.813 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.024 0.976 44 H 0.016 0.984 45 H 0.382 0.618 46 H 0.254 0.746 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 -18.384 9.313 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.079 4.079 4 C -0.035 4.035 5 N -0.119 5.119 6 N -0.167 5.167 7 H 0.289 0.711 8 C -0.051 4.051 9 C -0.294 4.294 10 C 0.383 3.617 11 O -0.419 6.419 12 N -0.337 5.337 13 C -0.022 4.022 14 C -0.163 4.163 15 C -0.107 4.107 16 H 0.090 0.910 17 C 0.029 3.971 18 N -0.376 5.376 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.117 4.117 28 H 0.091 0.909 29 C -0.204 4.204 30 C -0.002 4.002 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.204 0.796 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.109 0.891 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.009 -18.580 10.332 22.718 hybrid contribution 1.135 1.113 -0.742 1.754 sum -6.875 -17.466 9.590 21.078 Atomic orbital electron populations 1.21738 0.95451 1.01640 1.01817 1.21422 0.95822 0.95279 1.02714 1.20099 0.85481 0.98781 1.03511 1.22386 0.96906 0.95550 0.88690 1.77142 0.86259 1.26110 1.22379 1.46102 1.07787 1.57359 1.05439 0.71136 1.23202 0.98988 0.97369 0.85532 1.20224 0.92285 1.22251 0.94613 1.17291 0.81923 0.78948 0.83566 1.90740 1.27556 1.43154 1.80474 1.47984 1.36821 1.41455 1.07451 1.22043 0.89544 0.90169 1.00454 1.21918 1.03265 0.95103 0.96004 1.21329 0.97539 0.96549 0.95272 0.91037 1.20762 0.90883 0.88373 0.97130 1.42382 1.12185 1.09485 1.73553 1.19279 0.98041 0.87401 1.31893 0.91237 1.24716 0.96202 0.98324 1.01878 1.69657 1.03406 1.35679 1.49685 0.86137 0.77220 0.85149 0.77841 1.20585 1.21924 1.21916 1.21455 0.99061 0.94618 0.96552 0.90878 1.21831 1.01285 1.02603 0.94728 1.21678 1.01497 0.97508 0.79531 0.92914 0.92394 0.92715 0.90557 0.92325 0.90394 0.89516 0.79584 0.89804 0.91317 0.89443 0.91800 0.95791 0.96582 0.78366 0.93651 0.92556 0.92986 0.91378 0.89131 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.11 -1.17 5.92 -26.73 -0.16 -1.32 16 3 C -0.04 -0.43 5.28 -27.88 -0.15 -0.58 16 4 C 0.13 1.61 6.51 -82.02 -0.53 1.07 16 5 N -0.30 -3.46 12.63 33.89 0.43 -3.03 16 6 N -0.46 -3.89 7.29 30.85 0.22 -3.66 16 7 H 0.44 2.15 8.96 -182.72 -1.64 0.51 16 8 C 0.10 0.88 9.63 -16.56 -0.16 0.72 16 9 C -0.28 -3.30 5.22 -105.07 -0.55 -3.85 16 10 C 0.59 7.99 7.34 -12.52 -0.09 7.90 16 11 O -0.54 -8.61 15.45 5.27 0.08 -8.53 16 12 N -0.60 -7.40 2.97 -174.03 -0.52 -7.92 16 13 C 0.10 1.13 5.47 -3.71 -0.02 1.11 16 14 C -0.12 -1.79 5.25 -26.61 -0.14 -1.93 16 15 C -0.09 -1.33 1.73 -90.58 -0.16 -1.49 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.16 3.02 5.41 -4.04 -0.02 3.00 16 18 N -0.73 -17.89 5.32 -59.91 -0.32 -18.21 16 19 C -0.23 -6.48 9.99 -15.06 -0.15 -6.63 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.94 -27.70 13.06 55.49 0.72 -26.97 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C -0.10 -1.25 2.41 -90.50 -0.22 -1.47 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 30 C 0.12 1.45 5.73 -3.71 -0.02 1.43 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.92 7.66 -51.93 -0.40 0.52 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.02 7.80 -51.93 -0.41 0.61 16 38 H 0.19 1.03 7.32 -52.49 -0.38 0.65 16 39 H 0.08 0.85 4.79 -51.93 -0.25 0.60 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.47 6.14 -51.93 -0.32 0.16 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 49 H 0.07 0.88 6.30 -51.93 -0.33 0.56 16 50 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -33.46 399.66 -9.92 -43.38 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -9.78 Total: 6.60 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.77 Total: -4.90 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.54 Total: -59.80 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.46 -9.92 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184711391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.011 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds