Wall clock time and date at job start Tue Mar 31 2020 19:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 C 1.50697 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.30451 * 125.98982 * 270.04264 * 4 3 2 6 6 N 1.39939 * 108.89640 * 179.97438 * 5 4 3 7 7 H 0.96998 * 125.74902 * 179.97438 * 6 5 4 8 8 C 1.34263 * 108.48980 * 359.74957 * 6 5 4 9 9 C 1.38042 * 107.41708 * 0.39563 * 8 6 5 10 10 C 1.47428 * 126.41143 * 179.86952 * 9 8 6 11 11 O 1.21605 * 119.99844 * 139.71552 * 10 9 8 12 12 N 1.34773 * 120.00312 * 319.71112 * 10 9 8 13 13 C 1.46922 * 120.63119 * 354.50767 * 12 10 9 14 14 C 1.53192 * 108.78021 * 233.58540 * 13 12 10 15 15 C 1.53039 * 109.31212 * 305.36747 * 14 13 12 16 16 H 1.09006 * 109.45905 * 301.34086 * 15 14 13 17 17 C 1.52996 * 109.44728 * 181.37761 * 15 14 13 18 18 N 1.46503 * 109.47699 * 64.96321 * 17 15 14 19 19 C 1.36925 * 120.00329 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00641 * 359.97438 * 19 18 17 21 21 C 1.38821 * 119.99987 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00096 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00037 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46895 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46681 * 119.99506 * 23 21 19 26 26 H 1.48493 * 109.47052 * 239.99984 * 23 21 19 27 27 C 1.53036 * 109.53936 * 61.36023 * 15 14 13 28 28 H 1.08999 * 109.49499 * 58.58939 * 27 15 14 29 29 C 1.53002 * 109.49495 * 178.68285 * 27 15 14 30 30 C 1.46925 * 120.63243 * 174.48656 * 12 10 9 31 31 H 1.09001 * 109.46938 * 300.00521 * 1 2 3 32 32 H 1.09003 * 109.46936 * 59.99794 * 1 2 3 33 33 H 1.08998 * 109.47581 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46704 * 239.99956 * 2 1 3 35 35 H 1.09003 * 109.46936 * 120.00206 * 2 1 3 36 36 H 1.08997 * 109.46894 * 60.00163 * 3 2 1 37 37 H 1.09003 * 109.47293 * 299.99988 * 3 2 1 38 38 H 1.07996 * 126.28667 * 180.23861 * 8 6 5 39 39 H 1.09005 * 109.58389 * 353.37785 * 13 12 10 40 40 H 1.09005 * 109.58712 * 113.79377 * 13 12 10 41 41 H 1.09006 * 109.49600 * 185.41117 * 14 13 12 42 42 H 1.09002 * 109.49472 * 65.31896 * 14 13 12 43 43 H 1.09006 * 109.47332 * 184.96541 * 17 15 14 44 44 H 1.08996 * 109.47321 * 304.96036 * 17 15 14 45 45 H 0.97003 * 119.99410 * 0.02562 * 18 17 15 46 46 H 0.97002 * 120.00201 * 180.02562 * 22 21 19 47 47 H 1.08995 * 109.47349 * 60.00560 * 29 27 15 48 48 H 1.09009 * 109.46891 * 180.02562 * 29 27 15 49 49 H 1.08998 * 109.47499 * 299.99557 * 29 27 15 50 50 H 1.09000 * 109.58818 * 6.62342 * 30 12 10 51 51 H 1.09004 * 109.70389 * 246.27051 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3132 1.4417 1.0565 6 7 5.6509 1.4413 0.6457 7 1 6.4237 1.4411 1.2319 8 6 5.6842 1.4362 -0.6965 9 6 4.3778 1.4424 -1.1422 10 6 3.9327 1.4427 -2.5477 11 8 2.9796 0.7662 -2.8838 12 7 4.5819 2.1926 -3.4601 13 6 5.6572 3.1059 -3.0501 14 6 5.3455 4.5068 -3.5859 15 6 5.1265 4.4328 -5.0988 16 1 6.0195 4.0287 -5.5756 17 6 4.8489 5.8357 -5.6424 18 7 6.0372 6.6734 -5.4624 19 6 6.0240 7.9785 -5.8763 20 1 5.1377 8.3905 -6.3358 21 6 7.1502 8.7721 -5.7061 22 7 8.2306 8.2701 -5.1465 23 14 7.1325 10.5525 -6.2714 24 1 5.8086 10.8703 -6.8645 25 1 7.3816 11.4431 -5.1095 26 1 8.1931 10.7590 -7.2899 27 6 3.9325 3.5239 -5.3992 28 1 3.0443 3.9140 -4.9023 29 6 3.6941 3.4768 -6.9098 30 6 4.2282 2.1119 -4.8839 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6768 1.9564 -0.8900 38 1 6.5703 1.4309 -1.3139 39 1 5.7163 3.1356 -1.9620 40 1 6.6063 2.7605 -3.4602 41 1 6.1815 5.1727 -3.3714 42 1 4.4440 4.8876 -3.1060 43 1 4.6060 5.7728 -6.7032 44 1 4.0097 6.2749 -5.1031 45 1 6.8334 6.3034 -5.0500 46 1 9.0174 8.8247 -5.0272 47 1 4.5822 3.0853 -7.4058 48 1 2.8432 2.8297 -7.1234 49 1 3.4864 4.4821 -7.2765 50 1 3.3443 1.4858 -5.0060 51 1 5.0590 1.6846 -5.4454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184711391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:32 Heat of formation + Delta-G solvation = 7.551637 kcal Electronic energy + Delta-G solvation = -29628.214354 eV Core-core repulsion = 25755.639840 eV Total energy + Delta-G solvation = -3872.574514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.55311 -40.87720 -38.98329 -36.58833 -36.12096 -34.98835 -33.45880 -32.57347 -31.96849 -31.42968 -28.38563 -28.13098 -27.48259 -25.65125 -24.31155 -23.10708 -22.92874 -22.57285 -21.44683 -20.78046 -20.19834 -19.12883 -18.63750 -17.65840 -16.93605 -16.62554 -16.35745 -16.04812 -15.78091 -15.60241 -15.42562 -15.35931 -15.19571 -14.99922 -14.50041 -14.29660 -14.15409 -13.98401 -13.76555 -13.70082 -13.10297 -12.98391 -12.92731 -12.86672 -12.79360 -12.67680 -12.45331 -12.16568 -12.12750 -11.99136 -11.91334 -11.88435 -11.59132 -11.49311 -11.40950 -11.13934 -10.92308 -10.83582 -10.50052 -9.81609 -9.50168 -8.94328 -7.93844 -5.20575 0.60305 1.12153 1.47765 1.48199 1.57902 1.74947 2.01331 2.30283 2.56985 3.39896 3.40803 3.68807 3.71678 3.80218 3.85680 4.00921 4.08611 4.10196 4.19291 4.27988 4.34029 4.38467 4.41177 4.47026 4.58524 4.60669 4.66891 4.73444 4.80190 4.82026 4.83027 4.87025 4.90713 4.97851 5.03884 5.13374 5.14894 5.16384 5.25479 5.33788 5.35000 5.39954 5.41283 5.45405 5.50663 5.58516 5.67446 6.26039 6.29779 6.43393 6.56694 7.24371 7.36602 8.13262 8.37910 9.29713 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002672 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.256601 B =10477.952126 C =11287.077030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.039 4.039 4 C 0.119 3.881 5 N -0.319 5.319 6 N -0.447 5.447 7 H 0.460 0.540 8 C 0.125 3.875 9 C -0.312 4.312 10 C 0.594 3.406 11 O -0.573 6.573 12 N -0.603 5.603 13 C 0.109 3.891 14 C -0.120 4.120 15 C -0.077 4.077 16 H 0.073 0.927 17 C 0.156 3.844 18 N -0.740 5.740 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.294 1.294 26 H -0.292 1.292 27 C -0.088 4.088 28 H 0.060 0.940 29 C -0.144 4.144 30 C 0.123 3.877 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.224 0.776 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.006 0.994 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.053 0.947 50 H 0.085 0.915 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -19.133 9.513 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.078 4.078 4 C -0.049 4.049 5 N -0.142 5.142 6 N -0.154 5.154 7 H 0.309 0.691 8 C -0.029 4.029 9 C -0.326 4.326 10 C 0.384 3.616 11 O -0.453 6.453 12 N -0.334 5.334 13 C -0.013 4.013 14 C -0.158 4.158 15 C -0.096 4.096 16 H 0.092 0.908 17 C 0.030 3.970 18 N -0.383 5.383 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.221 1.221 26 H -0.220 1.220 27 C -0.108 4.108 28 H 0.078 0.922 29 C -0.201 4.201 30 C 0.001 3.999 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.240 0.760 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.209 0.791 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.103 0.897 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.471 -19.334 10.545 23.255 hybrid contribution 0.944 1.340 -0.796 1.822 sum -6.526 -17.993 9.749 21.480 Atomic orbital electron populations 1.21721 0.94224 1.02318 1.02075 1.21331 0.96854 0.94633 1.01659 1.20086 0.85536 0.99067 1.03141 1.22543 0.97377 0.95837 0.89101 1.77082 0.87573 1.26950 1.22607 1.46141 1.07455 1.55929 1.05829 0.69129 1.23665 0.98963 0.94570 0.85667 1.20235 0.93724 1.24974 0.93717 1.17517 0.81383 0.78477 0.84217 1.90719 1.28957 1.44582 1.81072 1.48010 1.36846 1.41190 1.07401 1.22047 0.90030 0.87883 1.01354 1.21810 1.01683 0.96885 0.95449 1.21211 0.98539 0.94219 0.95603 0.90819 1.20892 0.88770 0.90112 0.97271 1.42541 1.13368 1.09188 1.73247 1.19618 0.97899 0.88816 1.31033 0.91235 1.25466 0.96119 1.02153 1.02771 1.69788 1.03856 1.36894 1.51154 0.85155 0.77446 0.80550 0.77120 1.19450 1.22080 1.21962 1.21350 0.97351 0.94706 0.97346 0.92165 1.21798 1.02401 1.02204 0.93734 1.21658 1.02065 0.96445 0.79704 0.91722 0.93035 0.91835 0.92712 0.92084 0.89545 0.90944 0.75956 0.88361 0.88901 0.91529 0.93286 0.95586 0.97612 0.79091 0.94014 0.91788 0.91294 0.92769 0.89665 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.11 -2.19 5.92 30.60 0.18 -2.01 16 3 C -0.04 -0.86 5.28 29.85 0.16 -0.71 16 4 C 0.12 2.82 6.51 43.51 0.28 3.10 16 5 N -0.32 -7.05 12.63 -46.68 -0.59 -7.64 16 6 N -0.45 -6.45 7.29 -56.32 -0.41 -6.86 16 7 H 0.46 3.15 8.96 -213.43 -1.91 1.24 16 8 C 0.13 1.83 9.63 84.27 0.81 2.64 16 9 C -0.31 -6.98 5.22 -20.15 -0.11 -7.09 16 10 C 0.59 15.48 7.34 86.66 0.64 16.12 16 11 O -0.57 -18.29 15.45 -4.05 -0.06 -18.35 16 12 N -0.60 -13.80 2.97 -822.78 -2.45 -16.24 16 13 C 0.11 2.22 5.47 86.36 0.47 2.69 16 14 C -0.12 -3.37 5.25 30.67 0.16 -3.21 16 15 C -0.08 -2.27 1.73 -10.77 -0.02 -2.28 16 16 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 17 C 0.16 6.06 5.41 86.38 0.47 6.52 16 18 N -0.74 -36.43 5.32 -343.45 -1.83 -38.26 16 19 C -0.24 -13.36 9.99 84.04 0.84 -12.52 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 22 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 23 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 C -0.09 -2.18 2.41 -10.72 -0.03 -2.20 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 C -0.14 -3.23 8.82 71.98 0.63 -2.59 16 30 C 0.12 2.78 5.73 86.36 0.49 3.27 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.37 7.66 -2.39 -0.02 1.35 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.78 7.80 -2.39 -0.02 1.76 16 38 H 0.22 1.48 7.32 -2.91 -0.02 1.46 16 39 H 0.10 1.74 4.79 -2.38 -0.01 1.73 16 40 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.07 2.18 7.15 -2.38 -0.02 2.16 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.03 1.02 6.14 -2.38 -0.01 1.01 16 44 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.38 19.26 6.85 -92.71 -0.63 18.62 16 46 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.05 1.37 6.30 -2.39 -0.02 1.35 16 50 H 0.08 2.07 7.00 -2.39 -0.02 2.06 16 51 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -72.62 399.66 1.54 -71.08 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -1.61 Total: 29.41 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 6.17 Total: -3.66 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -4.99 Total: -126.22 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.62 1.54 -71.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184711391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.636 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds