Wall clock time and date at job start Tue Mar 31 2020 19:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.50707 * 109.46971 * 179.97438 * 3 2 1 5 5 N 1.30444 * 125.98722 * 89.97741 * 4 3 2 6 6 N 1.39930 * 108.89845 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.75907 * 179.73111 * 6 5 4 8 8 C 1.34261 * 108.49238 * 0.02562 * 6 5 4 9 9 C 1.38044 * 107.41430 * 359.97438 * 8 6 5 10 10 C 1.47433 * 126.41421 * 179.97438 * 9 8 6 11 11 O 1.21603 * 120.00022 * 220.28473 * 10 9 8 12 12 N 1.34773 * 119.99875 * 40.28409 * 10 9 8 13 13 C 1.46923 * 120.63325 * 5.51137 * 12 10 9 14 14 C 1.53184 * 108.77903 * 126.36718 * 13 12 10 15 15 C 1.53043 * 109.31466 * 54.63282 * 14 13 12 16 16 H 1.08998 * 109.45664 * 58.65655 * 15 14 13 17 17 C 1.52998 * 109.45840 * 178.61176 * 15 14 13 18 18 N 1.46492 * 109.47683 * 295.00178 * 17 15 14 19 19 C 1.36933 * 120.00259 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99974 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99954 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99748 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00356 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47166 * 89.99894 * 23 21 19 25 25 H 1.48498 * 109.47102 * 210.00138 * 23 21 19 26 26 H 1.48507 * 109.46700 * 329.99677 * 23 21 19 27 27 C 1.53040 * 109.53836 * 298.63930 * 15 14 13 28 28 H 1.08995 * 109.49201 * 181.31414 * 27 15 14 29 29 C 1.53005 * 109.49371 * 301.41021 * 27 15 14 30 30 C 1.46926 * 120.63029 * 185.22486 * 12 10 9 31 31 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46738 * 300.00118 * 1 2 3 33 33 H 1.09009 * 109.46740 * 59.99710 * 1 2 3 34 34 H 1.09004 * 109.47174 * 240.00429 * 2 1 3 35 35 H 1.08995 * 109.46797 * 120.00274 * 2 1 3 36 36 H 1.09004 * 109.46798 * 60.00199 * 3 2 1 37 37 H 1.08995 * 109.47561 * 299.99807 * 3 2 1 38 38 H 1.07999 * 126.29301 * 180.02562 * 8 6 5 39 39 H 1.08999 * 109.58619 * 246.15819 * 13 12 10 40 40 H 1.09006 * 109.58783 * 6.57381 * 13 12 10 41 41 H 1.09002 * 109.49713 * 174.58618 * 14 13 12 42 42 H 1.09005 * 109.49594 * 294.64921 * 14 13 12 43 43 H 1.09003 * 109.47149 * 55.00758 * 17 15 14 44 44 H 1.09002 * 109.46826 * 175.00203 * 17 15 14 45 45 H 0.97001 * 119.99829 * 0.02562 * 18 17 15 46 46 H 0.96998 * 119.99934 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47107 * 59.99975 * 29 27 15 48 48 H 1.08997 * 109.46864 * 180.02562 * 29 27 15 49 49 H 1.08998 * 109.47172 * 300.00154 * 29 27 15 50 50 H 1.09001 * 109.58850 * 353.42533 * 30 12 10 51 51 H 1.09000 * 109.58844 * 113.84262 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 7 4.3140 1.4419 -1.0545 6 7 5.6514 1.4415 -0.6428 7 1 6.4248 1.4374 -1.2283 8 6 5.6837 1.4413 0.6995 9 6 4.3769 1.4422 1.1442 10 6 3.9306 1.4418 2.5493 11 8 2.9803 0.7614 2.8853 12 7 4.5758 2.1954 3.4615 13 6 5.6472 3.1133 3.0514 14 6 5.3281 4.5134 3.5849 15 6 5.1077 4.4405 5.0976 16 1 6.0021 4.0414 5.5760 17 6 4.8229 5.8428 5.6393 18 7 6.0077 6.6855 5.4603 19 6 5.9883 7.9908 5.8737 20 1 5.0993 8.3992 6.3313 21 6 7.1108 8.7895 5.7035 22 7 7.0923 10.0441 6.1013 23 14 8.6477 8.0839 4.9100 24 1 8.5849 8.2892 3.4407 25 1 9.8461 8.7708 5.4552 26 1 8.7336 6.6307 5.2037 27 6 3.9177 3.5263 5.3980 28 1 3.7469 3.4934 6.4740 29 6 2.6691 4.0668 4.6982 30 6 4.2170 2.1192 4.8843 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6768 1.9564 -0.8899 38 1 6.5693 1.4414 1.3176 39 1 6.5974 2.7732 3.4630 40 1 5.7074 3.1418 1.9633 41 1 6.1610 5.1830 3.3704 42 1 4.4256 4.8894 3.1029 43 1 3.9825 6.2776 5.0981 44 1 4.5786 5.7799 6.6997 45 1 6.8059 6.3189 5.0489 46 1 7.8768 10.6021 5.9828 47 1 2.8405 4.0981 3.6222 48 1 1.8218 3.4157 4.9128 49 1 2.4555 5.0721 5.0614 50 1 3.3339 1.4919 5.0054 51 1 5.0482 1.6963 5.4486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184711393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:39 Heat of formation + Delta-G solvation = 36.211745 kcal Electronic energy + Delta-G solvation = -30011.514521 eV Core-core repulsion = 26140.182803 eV Total energy + Delta-G solvation = -3871.331718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.81902 -40.08637 -37.95913 -35.51886 -35.01061 -33.54305 -31.97133 -31.84272 -30.68976 -30.51719 -27.42246 -27.29893 -26.68947 -24.02059 -23.07417 -22.68158 -22.14591 -21.24463 -20.60692 -19.61637 -18.78606 -17.95991 -17.46748 -16.75680 -15.80239 -15.69421 -15.29772 -15.09568 -14.77555 -14.64436 -14.35433 -14.18293 -13.95345 -13.81103 -13.48013 -13.39124 -13.14056 -12.91106 -12.71721 -12.45116 -12.28211 -12.24013 -11.74035 -11.62472 -11.48641 -11.43823 -11.39567 -11.19244 -11.05099 -10.83703 -10.70568 -10.49303 -10.28664 -10.15307 -10.09029 -9.88367 -9.76558 -9.59461 -9.02181 -8.89707 -8.58913 -7.22946 -5.78073 -3.13027 1.28151 1.96330 2.37382 2.87036 3.16931 3.32718 3.34128 3.41477 4.16569 4.33894 4.56401 4.63668 4.74512 4.76962 4.88585 4.93318 4.97171 5.03204 5.09635 5.13293 5.18374 5.32110 5.35969 5.46087 5.53525 5.55296 5.61640 5.62917 5.68385 5.73920 5.75990 5.78454 5.84854 5.87808 5.96054 6.09007 6.13340 6.15900 6.20770 6.22392 6.32108 6.33558 6.43691 6.56906 6.70941 6.77548 6.84137 7.23463 7.39090 7.99113 8.17328 8.41218 9.20552 9.92784 10.12915 11.40660 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.002962 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.530335 B = 9449.576649 C =10291.463436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.040 4.040 4 C 0.133 3.867 5 N -0.296 5.296 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.099 3.901 9 C -0.278 4.278 10 C 0.595 3.405 11 O -0.538 6.538 12 N -0.602 5.602 13 C 0.100 3.900 14 C -0.129 4.129 15 C -0.092 4.092 16 H 0.070 0.930 17 C 0.162 3.838 18 N -0.755 5.755 19 C -0.241 4.241 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.098 4.098 28 H 0.083 0.917 29 C -0.145 4.145 30 C 0.119 3.881 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.186 0.814 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.026 0.974 45 H 0.359 0.641 46 H 0.259 0.741 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 -22.386 -12.089 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.079 4.079 4 C -0.035 4.035 5 N -0.118 5.118 6 N -0.167 5.167 7 H 0.288 0.712 8 C -0.053 4.053 9 C -0.293 4.293 10 C 0.383 3.617 11 O -0.416 6.416 12 N -0.335 5.335 13 C -0.023 4.023 14 C -0.167 4.167 15 C -0.111 4.111 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.401 5.401 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.583 5.583 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.117 4.117 28 H 0.101 0.899 29 C -0.202 4.202 30 C -0.003 4.003 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.203 0.797 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.192 0.808 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.111 0.889 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.020 -22.524 -13.076 26.731 hybrid contribution 2.015 -0.137 0.086 2.021 sum -4.005 -22.662 -12.990 26.426 Atomic orbital electron populations 1.21738 0.95410 1.01666 1.01839 1.21420 0.95861 0.95237 1.02705 1.20108 0.85423 0.98818 1.03542 1.22399 0.96932 0.95502 0.88664 1.77150 0.86229 1.26036 1.22380 1.46107 1.07819 1.57359 1.05417 0.71157 1.23188 0.98969 0.97577 0.85559 1.20237 0.92254 1.22184 0.94655 1.17268 0.81876 0.79032 0.83497 1.90747 1.27547 1.42917 1.80384 1.47920 1.36936 1.41124 1.07509 1.22018 0.89724 0.90038 1.00506 1.21979 1.03251 0.95187 0.96294 1.21356 0.97674 0.96734 0.95347 0.91150 1.20700 0.90406 0.87900 0.97471 1.42732 1.12199 1.10358 1.74830 1.19073 1.00121 0.85238 1.32687 0.89282 1.24681 0.97727 0.95674 1.01246 1.69703 1.29776 1.06084 1.52777 0.86550 0.84303 0.78258 0.79446 1.21144 1.21782 1.20375 1.21381 0.95846 0.94013 1.00499 0.89861 1.21864 0.96392 1.01161 1.00809 1.21584 1.01465 0.97513 0.79751 0.92700 0.92370 0.92906 0.92336 0.90563 0.89498 0.90368 0.79679 0.91440 0.89738 0.90328 0.90883 0.95208 0.95628 0.80797 0.93097 0.92591 0.93123 0.91946 0.88911 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.04 -0.41 5.29 -27.88 -0.15 -0.56 16 4 C 0.13 1.53 6.51 -82.02 -0.53 0.99 16 5 N -0.30 -3.27 12.63 33.90 0.43 -2.84 16 6 N -0.46 -3.59 7.29 30.85 0.22 -3.37 16 7 H 0.44 1.88 8.96 -182.73 -1.64 0.24 16 8 C 0.10 0.79 9.63 -16.56 -0.16 0.63 16 9 C -0.28 -3.07 5.22 -105.07 -0.55 -3.62 16 10 C 0.60 7.42 7.34 -12.52 -0.09 7.33 16 11 O -0.54 -8.08 15.46 5.27 0.08 -8.00 16 12 N -0.60 -6.69 2.42 -174.31 -0.42 -7.11 16 13 C 0.10 1.01 5.47 -3.72 -0.02 0.99 16 14 C -0.13 -1.67 4.90 -26.61 -0.13 -1.80 16 15 C -0.09 -1.28 1.96 -90.58 -0.18 -1.46 16 16 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 17 C 0.16 2.98 5.18 -4.05 -0.02 2.96 16 18 N -0.76 -17.31 5.12 -59.91 -0.31 -17.61 16 19 C -0.24 -6.74 10.47 -15.06 -0.16 -6.90 16 20 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 22 N -0.94 -29.24 13.97 55.49 0.78 -28.46 16 23 Si 0.88 21.56 27.74 -169.99 -4.71 16.84 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 27 C -0.10 -1.16 2.72 -90.72 -0.25 -1.41 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 C -0.15 -1.80 8.38 37.16 0.31 -1.49 16 30 C 0.12 1.31 5.79 -3.94 -0.02 1.29 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.88 7.66 -51.93 -0.40 0.49 16 36 H 0.09 0.97 7.81 -51.93 -0.41 0.56 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.19 0.87 7.32 -52.49 -0.38 0.49 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.76 4.79 -51.93 -0.25 0.51 16 41 H 0.08 1.13 7.15 -51.93 -0.37 0.76 16 42 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 43 H 0.03 0.57 6.74 -51.93 -0.35 0.22 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.36 7.92 4.71 -40.82 -0.19 7.73 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.06 0.74 5.97 -51.93 -0.31 0.43 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 50 H 0.09 1.10 6.99 -51.93 -0.36 0.73 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -34.50 392.52 -9.42 -43.92 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -9.57 Total: 5.92 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.83 Total: -5.21 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.70 Total: -59.39 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.08 Total: -8.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.50 -9.42 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184711393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.135 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds