Wall clock time and date at job start Tue Mar 31 2020 19:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.50707 * 109.46971 * 179.97438 * 3 2 1 5 5 N 1.30444 * 125.98722 * 89.97741 * 4 3 2 6 6 N 1.39930 * 108.89845 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.75907 * 179.73111 * 6 5 4 8 8 C 1.34261 * 108.49238 * 0.02562 * 6 5 4 9 9 C 1.38044 * 107.41430 * 359.97438 * 8 6 5 10 10 C 1.47433 * 126.41421 * 179.97438 * 9 8 6 11 11 O 1.21603 * 120.00022 * 220.28473 * 10 9 8 12 12 N 1.34773 * 119.99875 * 40.28409 * 10 9 8 13 13 C 1.46923 * 120.63325 * 5.51137 * 12 10 9 14 14 C 1.53184 * 108.77903 * 126.36718 * 13 12 10 15 15 C 1.53043 * 109.31466 * 54.63282 * 14 13 12 16 16 H 1.08998 * 109.45664 * 58.65655 * 15 14 13 17 17 C 1.52998 * 109.45840 * 178.61176 * 15 14 13 18 18 N 1.46492 * 109.47683 * 295.00178 * 17 15 14 19 19 C 1.36933 * 120.00259 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99974 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99954 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99748 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00356 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47166 * 89.99894 * 23 21 19 25 25 H 1.48498 * 109.47102 * 210.00138 * 23 21 19 26 26 H 1.48507 * 109.46700 * 329.99677 * 23 21 19 27 27 C 1.53040 * 109.53836 * 298.63930 * 15 14 13 28 28 H 1.08995 * 109.49201 * 181.31414 * 27 15 14 29 29 C 1.53005 * 109.49371 * 301.41021 * 27 15 14 30 30 C 1.46926 * 120.63029 * 185.22486 * 12 10 9 31 31 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46738 * 300.00118 * 1 2 3 33 33 H 1.09009 * 109.46740 * 59.99710 * 1 2 3 34 34 H 1.09004 * 109.47174 * 240.00429 * 2 1 3 35 35 H 1.08995 * 109.46797 * 120.00274 * 2 1 3 36 36 H 1.09004 * 109.46798 * 60.00199 * 3 2 1 37 37 H 1.08995 * 109.47561 * 299.99807 * 3 2 1 38 38 H 1.07999 * 126.29301 * 180.02562 * 8 6 5 39 39 H 1.08999 * 109.58619 * 246.15819 * 13 12 10 40 40 H 1.09006 * 109.58783 * 6.57381 * 13 12 10 41 41 H 1.09002 * 109.49713 * 174.58618 * 14 13 12 42 42 H 1.09005 * 109.49594 * 294.64921 * 14 13 12 43 43 H 1.09003 * 109.47149 * 55.00758 * 17 15 14 44 44 H 1.09002 * 109.46826 * 175.00203 * 17 15 14 45 45 H 0.97001 * 119.99829 * 0.02562 * 18 17 15 46 46 H 0.96998 * 119.99934 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47107 * 59.99975 * 29 27 15 48 48 H 1.08997 * 109.46864 * 180.02562 * 29 27 15 49 49 H 1.08998 * 109.47172 * 300.00154 * 29 27 15 50 50 H 1.09001 * 109.58850 * 353.42533 * 30 12 10 51 51 H 1.09000 * 109.58844 * 113.84262 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 7 4.3140 1.4419 -1.0545 6 7 5.6514 1.4415 -0.6428 7 1 6.4248 1.4374 -1.2283 8 6 5.6837 1.4413 0.6995 9 6 4.3769 1.4422 1.1442 10 6 3.9306 1.4418 2.5493 11 8 2.9803 0.7614 2.8853 12 7 4.5758 2.1954 3.4615 13 6 5.6472 3.1133 3.0514 14 6 5.3281 4.5134 3.5849 15 6 5.1077 4.4405 5.0976 16 1 6.0021 4.0414 5.5760 17 6 4.8229 5.8428 5.6393 18 7 6.0077 6.6855 5.4603 19 6 5.9883 7.9908 5.8737 20 1 5.0993 8.3992 6.3313 21 6 7.1108 8.7895 5.7035 22 7 7.0923 10.0441 6.1013 23 14 8.6477 8.0839 4.9100 24 1 8.5849 8.2892 3.4407 25 1 9.8461 8.7708 5.4552 26 1 8.7336 6.6307 5.2037 27 6 3.9177 3.5263 5.3980 28 1 3.7469 3.4934 6.4740 29 6 2.6691 4.0668 4.6982 30 6 4.2170 2.1192 4.8843 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6768 1.9564 -0.8899 38 1 6.5693 1.4414 1.3176 39 1 6.5974 2.7732 3.4630 40 1 5.7074 3.1418 1.9633 41 1 6.1610 5.1830 3.3704 42 1 4.4256 4.8894 3.1029 43 1 3.9825 6.2776 5.0981 44 1 4.5786 5.7799 6.6997 45 1 6.8059 6.3189 5.0489 46 1 7.8768 10.6021 5.9828 47 1 2.8405 4.0981 3.6222 48 1 1.8218 3.4157 4.9128 49 1 2.4555 5.0721 5.0614 50 1 3.3339 1.4919 5.0054 51 1 5.0482 1.6963 5.4486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184711393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:37 Heat of formation + Delta-G solvation = 13.659638 kcal Electronic energy + Delta-G solvation = -30012.492454 eV Core-core repulsion = 26140.182803 eV Total energy + Delta-G solvation = -3872.309651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.55730 -41.01844 -39.02440 -36.69040 -36.14263 -34.83492 -33.49243 -32.56807 -32.20998 -31.30865 -28.73115 -28.16043 -27.64552 -25.41752 -24.27673 -23.67450 -22.93901 -22.57371 -21.48638 -20.43673 -20.03597 -19.30400 -18.59490 -17.70506 -16.80755 -16.54505 -16.53132 -16.11252 -15.98027 -15.59136 -15.49788 -15.36468 -15.15237 -14.81071 -14.70786 -14.44908 -14.27262 -13.95044 -13.88653 -13.69602 -13.45037 -13.22611 -12.97440 -12.84835 -12.65250 -12.49492 -12.41331 -12.16896 -12.15728 -11.99418 -11.95700 -11.83412 -11.53906 -11.48977 -11.32740 -11.23662 -10.92324 -10.81487 -10.49720 -9.79582 -9.46690 -9.25528 -8.00488 -5.33941 0.62120 1.13724 1.38090 1.44192 1.51752 1.76476 2.03753 2.33305 2.51204 3.30823 3.42017 3.58181 3.70399 3.77184 3.83487 3.97039 4.09558 4.12429 4.17343 4.19556 4.31064 4.35723 4.41329 4.44792 4.50925 4.60642 4.68997 4.76430 4.80971 4.82513 4.85569 4.87529 4.89980 4.97267 5.02272 5.08837 5.13676 5.17960 5.22928 5.26951 5.34148 5.34932 5.41091 5.44908 5.57501 5.69720 5.78091 6.23344 6.27009 6.46105 6.58413 7.10976 7.28618 7.86780 8.08071 9.21462 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.002962 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.530335 B = 9449.576649 C =10291.463436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.039 4.039 4 C 0.118 3.882 5 N -0.321 5.321 6 N -0.448 5.448 7 H 0.460 0.540 8 C 0.124 3.876 9 C -0.310 4.310 10 C 0.595 3.405 11 O -0.573 6.573 12 N -0.599 5.599 13 C 0.106 3.894 14 C -0.128 4.128 15 C -0.081 4.081 16 H 0.082 0.918 17 C 0.160 3.840 18 N -0.754 5.754 19 C -0.235 4.235 20 H 0.049 0.951 21 C -0.070 4.070 22 N -0.988 5.988 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.299 1.299 26 H -0.242 1.242 27 C -0.091 4.091 28 H 0.091 0.909 29 C -0.140 4.140 30 C 0.123 3.877 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.368 0.632 46 H 0.257 0.743 47 H 0.046 0.954 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.084 0.916 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -24.915 -13.370 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.078 4.078 4 C -0.049 4.049 5 N -0.144 5.144 6 N -0.154 5.154 7 H 0.308 0.692 8 C -0.029 4.029 9 C -0.325 4.325 10 C 0.384 3.616 11 O -0.453 6.453 12 N -0.331 5.331 13 C -0.016 4.016 14 C -0.166 4.166 15 C -0.099 4.099 16 H 0.100 0.900 17 C 0.034 3.966 18 N -0.400 5.400 19 C -0.366 4.366 20 H 0.067 0.933 21 C -0.261 4.261 22 N -0.639 5.639 23 Si 0.786 3.214 24 H -0.202 1.202 25 H -0.226 1.226 26 H -0.166 1.166 27 C -0.111 4.111 28 H 0.110 0.890 29 C -0.198 4.198 30 C 0.001 3.999 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.242 0.758 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.202 0.798 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.102 0.898 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.740 -25.098 -14.385 29.169 hybrid contribution 1.201 0.712 0.519 1.490 sum -2.539 -24.387 -13.865 28.168 Atomic orbital electron populations 1.21722 0.94315 1.02282 1.02051 1.21324 0.96779 0.94699 1.01632 1.20077 0.85671 0.98978 1.03094 1.22528 0.97301 0.95881 0.89204 1.77087 0.87637 1.26962 1.22673 1.46144 1.07416 1.55964 1.05893 0.69173 1.23681 0.98970 0.94650 0.85611 1.20252 0.93668 1.24838 0.93775 1.17478 0.81340 0.78612 0.84123 1.90728 1.29064 1.44475 1.80995 1.47942 1.36981 1.40838 1.07329 1.22089 0.90298 0.87794 1.01455 1.21932 1.02235 0.97110 0.95356 1.21247 0.98871 0.93797 0.96032 0.89950 1.20835 0.88544 0.90047 0.97156 1.42670 1.13899 1.08918 1.74487 1.19027 0.98682 0.87427 1.31443 0.93268 1.25609 1.01845 0.95996 1.02607 1.69913 1.30898 1.08065 1.55002 0.85346 0.78545 0.79216 0.78340 1.20153 1.22615 1.16644 1.21333 0.94477 0.94249 1.00998 0.89039 1.21803 0.97184 1.00533 1.00243 1.21556 1.02053 0.96313 0.80014 0.91892 0.93020 0.91794 0.92168 0.92662 0.90906 0.89698 0.75784 0.88492 0.88352 0.91177 0.92435 0.96315 0.96350 0.79807 0.93414 0.93457 0.92665 0.93300 0.89804 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.11 -2.09 5.92 30.60 0.18 -1.91 16 3 C -0.04 -0.82 5.29 29.85 0.16 -0.66 16 4 C 0.12 2.61 6.51 43.52 0.28 2.89 16 5 N -0.32 -6.57 12.63 -46.67 -0.59 -7.16 16 6 N -0.45 -5.56 7.29 -56.32 -0.41 -5.97 16 7 H 0.46 2.27 8.96 -213.43 -1.91 0.35 16 8 C 0.12 1.51 9.63 84.28 0.81 2.32 16 9 C -0.31 -6.24 5.22 -20.15 -0.11 -6.35 16 10 C 0.60 13.94 7.34 86.67 0.64 14.57 16 11 O -0.57 -17.05 15.46 -4.04 -0.06 -17.11 16 12 N -0.60 -11.70 2.42 -823.64 -1.99 -13.69 16 13 C 0.11 1.71 5.47 86.36 0.47 2.18 16 14 C -0.13 -2.99 4.90 30.67 0.15 -2.84 16 15 C -0.08 -2.05 1.96 -10.77 -0.02 -2.07 16 16 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 17 C 0.16 5.80 5.18 86.38 0.45 6.25 16 18 N -0.75 -33.72 5.12 -343.46 -1.76 -35.48 16 19 C -0.23 -13.32 10.47 84.04 0.88 -12.44 16 20 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 22 N -0.99 -63.34 13.97 21.65 0.30 -63.04 16 23 Si 0.96 43.62 27.74 68.60 1.90 45.53 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.24 -9.52 6.52 99.48 0.65 -8.87 16 27 C -0.09 -2.00 2.72 -10.86 -0.03 -2.03 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 C -0.14 -3.45 8.38 71.98 0.60 -2.85 16 30 C 0.12 2.40 5.79 86.22 0.50 2.90 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.05 1.32 7.66 -2.39 -0.02 1.30 16 36 H 0.07 1.70 7.81 -2.38 -0.02 1.68 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.23 0.81 7.32 -2.91 -0.02 0.79 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.35 4.79 -2.38 -0.01 1.34 16 41 H 0.07 1.78 7.15 -2.39 -0.02 1.77 16 42 H 0.06 1.52 6.34 -2.38 -0.02 1.51 16 43 H 0.02 0.73 6.74 -2.39 -0.02 0.71 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.37 15.15 4.71 -92.71 -0.44 14.72 16 46 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.05 1.24 5.97 -2.39 -0.01 1.22 16 48 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.05 1.31 6.58 -2.39 -0.02 1.29 16 50 H 0.08 1.85 6.99 -2.39 -0.02 1.84 16 51 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.77 392.52 2.08 -75.69 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -1.46 Total: 26.52 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.15 Total: -5.28 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -4.45 Total: -125.35 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.90 Total: 45.53 kcal Total: -77.77 2.08 -75.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184711393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.347 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds