Wall clock time and date at job start Tue Mar 31 2020 19:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46767 * 2 1 4 4 C 1.50706 * 109.46608 * 180.02562 * 3 2 1 5 5 C 1.35363 * 126.38669 * 85.00330 * 4 3 2 6 6 C 1.41506 * 105.50472 * 180.02562 * 5 4 3 7 7 C 1.47710 * 126.52020 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99639 * 352.88843 * 7 6 5 9 9 N 1.34774 * 120.00028 * 172.88711 * 7 6 5 10 10 C 1.46929 * 120.63017 * 353.01122 * 9 7 6 11 11 C 1.53182 * 108.77722 * 233.63120 * 10 9 7 12 12 C 1.53041 * 109.31411 * 305.37065 * 11 10 9 13 13 H 1.09003 * 109.45623 * 301.33818 * 12 11 10 14 14 C 1.53007 * 109.46130 * 181.38817 * 12 11 10 15 15 N 1.46498 * 109.47118 * 64.99359 * 14 12 11 16 16 C 1.36944 * 119.99707 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99571 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99766 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00330 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47187 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47504 * 120.00025 * 20 18 16 23 23 H 1.48500 * 109.47279 * 240.00363 * 20 18 16 24 24 C 1.53038 * 109.54114 * 61.36556 * 12 11 10 25 25 H 1.08996 * 109.49992 * 58.62001 * 24 12 11 26 26 C 1.52999 * 109.49713 * 178.68836 * 24 12 11 27 27 C 1.46923 * 120.62706 * 173.03943 * 9 7 6 28 28 N 1.31809 * 106.95953 * 0.24105 * 6 5 4 29 29 N 1.28462 * 110.07670 * 359.59071 * 28 6 5 30 30 H 0.97007 * 124.88855 * 180.20839 * 29 28 6 31 31 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47382 * 299.99914 * 1 2 3 33 33 H 1.08994 * 109.47281 * 60.00191 * 1 2 3 34 34 H 1.08999 * 109.46649 * 240.00116 * 2 1 3 35 35 H 1.09001 * 109.46696 * 120.00041 * 2 1 3 36 36 H 1.08999 * 109.47441 * 60.00601 * 3 2 1 37 37 H 1.09001 * 109.47546 * 299.99520 * 3 2 1 38 38 H 1.07997 * 127.25022 * 359.97438 * 5 4 3 39 39 H 1.09001 * 109.58364 * 113.84517 * 10 9 7 40 40 H 1.09001 * 109.58598 * 353.42493 * 10 9 7 41 41 H 1.09001 * 109.50086 * 65.31952 * 11 10 9 42 42 H 1.09003 * 109.49874 * 185.38086 * 11 10 9 43 43 H 1.09002 * 109.47015 * 184.99746 * 14 12 11 44 44 H 1.09003 * 109.46802 * 304.99561 * 14 12 11 45 45 H 0.96996 * 120.00004 * 0.02562 * 15 14 12 46 46 H 0.97007 * 120.00569 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.47797 * 59.99555 * 26 24 12 48 48 H 1.09001 * 109.47123 * 179.97438 * 26 24 12 49 49 H 1.09001 * 109.46927 * 299.99204 * 26 24 12 50 50 H 1.08991 * 109.59231 * 6.58161 * 27 9 7 51 51 H 1.08997 * 109.70176 * 246.21906 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3495 1.3476 -1.0866 6 6 5.6719 1.3909 -0.5846 7 6 6.9159 1.3209 -1.3778 8 8 6.8646 1.0858 -2.5695 9 7 8.1080 1.5176 -0.7805 10 6 8.1802 1.9519 0.6213 11 6 9.0523 3.2086 0.7038 12 6 10.4126 2.9237 0.0630 13 1 10.8895 2.0904 0.5789 14 6 11.2987 4.1661 0.1744 15 7 11.5839 4.4375 1.5855 16 6 12.3646 5.5077 1.9327 17 1 12.7696 6.1518 1.1662 18 6 12.6353 5.7646 3.2696 19 7 12.1421 4.9793 4.2036 20 14 13.6995 7.2249 3.7433 21 1 14.1263 7.9450 2.5166 22 1 12.9205 8.1446 4.6107 23 1 14.8975 6.7464 4.4790 24 6 10.2187 2.5664 -1.4124 25 1 9.7199 3.3898 -1.9236 26 6 11.5816 2.3138 -2.0600 27 6 9.3598 1.3023 -1.5189 28 7 5.5823 1.4996 0.7259 29 7 4.3485 1.5364 1.0821 30 1 4.0374 1.6167 1.9974 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.0449 1.2572 -2.1187 39 1 8.6218 1.1603 1.2267 40 1 7.1782 2.1778 0.9860 41 1 8.5640 4.0258 0.1728 42 1 9.1926 3.4861 1.7485 43 1 12.2338 3.9944 -0.3588 44 1 10.7827 5.0208 -0.2629 45 1 11.2205 3.8587 2.2738 46 1 12.3310 5.1590 5.1380 47 1 12.0795 1.4897 -1.5493 48 1 11.4430 2.0589 -3.1107 49 1 12.1933 3.2126 -1.9815 50 1 9.1361 1.0998 -2.5662 51 1 9.8986 0.4574 -1.0902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184911411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:26 Heat of formation + Delta-G solvation = 36.758295 kcal Electronic energy + Delta-G solvation = -29000.350838 eV Core-core repulsion = 25129.042819 eV Total energy + Delta-G solvation = -3871.308018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.95935 -39.95894 -37.83513 -35.81327 -34.90335 -33.57842 -32.10907 -31.75754 -31.25943 -30.22584 -27.24985 -26.82327 -26.56787 -24.21780 -23.13428 -22.40541 -22.21673 -21.25548 -21.16452 -19.76962 -18.84257 -18.06927 -17.07584 -16.63012 -16.06246 -15.85262 -15.54427 -14.98343 -14.68978 -14.42411 -14.27785 -14.01711 -13.89000 -13.75544 -13.49451 -13.45621 -13.09857 -12.87065 -12.69113 -12.50391 -12.42637 -12.01770 -11.81310 -11.77178 -11.67531 -11.54665 -11.22649 -10.96416 -10.91463 -10.78491 -10.73937 -10.30418 -10.19107 -10.09100 -9.95423 -9.72032 -9.58096 -9.54550 -9.16784 -8.82448 -8.45653 -6.85855 -5.73579 -3.00965 1.41428 1.87320 2.55529 3.08583 3.37211 3.44705 3.50580 3.52627 4.12233 4.27001 4.41841 4.54844 4.61759 4.75901 4.93359 4.94747 5.03360 5.11661 5.16700 5.21316 5.30305 5.33175 5.37039 5.48295 5.52478 5.57290 5.60706 5.63739 5.73104 5.77109 5.80168 5.81725 5.91039 5.99425 6.05935 6.07358 6.14848 6.25427 6.33130 6.39756 6.45338 6.59000 6.59183 6.73167 6.82713 6.92832 7.02430 7.43860 7.68505 7.73970 8.20383 8.46024 9.57048 10.16609 10.51291 11.49549 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.002406 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.589239 B =11635.797863 C =13223.889926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.051 4.051 4 C 0.018 3.982 5 C -0.176 4.176 6 C -0.004 4.004 7 C 0.601 3.399 8 O -0.542 6.542 9 N -0.594 5.594 10 C 0.087 3.913 11 C -0.123 4.123 12 C -0.089 4.089 13 H 0.071 0.929 14 C 0.156 3.844 15 N -0.732 5.732 16 C -0.234 4.234 17 H 0.070 0.930 18 C -0.017 4.017 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.097 4.097 25 H 0.073 0.927 26 C -0.146 4.146 27 C 0.118 3.882 28 N -0.252 5.252 29 N -0.382 5.382 30 H 0.444 0.556 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.161 0.839 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.024 0.976 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.253 0.747 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.919 -11.407 -9.060 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.108 4.108 5 C -0.204 4.204 6 C -0.164 4.164 7 C 0.387 3.613 8 O -0.418 6.418 9 N -0.325 5.325 10 C -0.036 4.036 11 C -0.162 4.162 12 C -0.108 4.108 13 H 0.090 0.910 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.584 5.584 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.116 4.116 25 H 0.091 0.909 26 C -0.204 4.204 27 C -0.004 4.004 28 N -0.087 5.087 29 N -0.096 5.096 30 H 0.288 0.712 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.179 0.821 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.158 -11.312 -8.803 25.556 hybrid contribution -0.024 0.698 0.576 0.905 sum -21.182 -10.614 -8.226 25.080 Atomic orbital electron populations 1.21782 0.95192 1.02058 1.02041 1.21545 0.96030 0.95454 1.02903 1.20236 0.86287 0.98321 1.04150 1.21429 0.95000 1.07028 0.87363 1.21469 0.90353 1.08789 0.99762 1.21942 0.95170 1.09447 0.89827 1.16989 0.81601 0.76897 0.85809 1.90761 1.86397 1.50546 1.14113 1.47973 1.05105 1.65697 1.13746 1.22540 1.03952 0.96830 0.80283 1.21922 0.94962 0.96494 1.02787 1.21354 0.95929 0.99496 0.94065 0.91041 1.20764 0.95277 0.93214 0.87868 1.42392 1.60910 1.33295 1.00988 1.19287 1.22357 1.03490 0.91429 0.91243 1.24720 1.01404 0.99316 0.95777 1.69666 1.49618 1.39565 0.99517 0.86133 0.79893 0.82220 0.78069 1.20611 1.21966 1.21940 1.21452 0.96011 0.97350 0.96830 0.90888 1.21830 0.96322 1.02599 0.99665 1.21737 0.83376 0.97528 0.97787 1.73524 1.00769 1.19488 1.14940 1.43531 1.03180 1.52917 1.09944 0.71177 0.92423 0.92633 0.92376 0.91138 0.91945 0.90514 0.88979 0.82140 0.91578 0.86148 0.92137 0.89484 0.95827 0.96626 0.78313 0.93673 0.92535 0.92995 0.91348 0.89179 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.58 5.92 -26.73 -0.16 -0.73 16 3 C -0.05 -0.25 5.77 -27.88 -0.16 -0.41 16 4 C 0.02 0.14 6.48 -82.20 -0.53 -0.39 16 5 C -0.18 -1.93 10.74 -39.36 -0.42 -2.35 16 6 C 0.00 -0.05 6.82 -82.76 -0.56 -0.61 16 7 C 0.60 9.30 7.69 -12.39 -0.10 9.20 16 8 O -0.54 -9.55 16.36 5.30 0.09 -9.47 16 9 N -0.59 -8.66 2.97 -173.94 -0.52 -9.17 16 10 C 0.09 1.24 6.10 -3.71 -0.02 1.21 16 11 C -0.12 -2.00 5.25 -26.62 -0.14 -2.14 16 12 C -0.09 -1.48 1.73 -90.58 -0.16 -1.64 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 14 C 0.16 3.19 5.41 -4.04 -0.02 3.17 16 15 N -0.73 -18.58 5.32 -59.91 -0.32 -18.89 16 16 C -0.23 -6.63 9.99 -15.06 -0.15 -6.78 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 19 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 24 C -0.10 -1.37 2.42 -90.50 -0.22 -1.59 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 C -0.15 -1.88 8.82 37.16 0.33 -1.55 16 27 C 0.12 1.61 5.73 -3.71 -0.02 1.59 16 28 N -0.25 -2.99 8.73 33.42 0.29 -2.70 16 29 N -0.38 -3.24 6.83 33.50 0.23 -3.01 16 30 H 0.44 2.24 8.96 -190.44 -1.71 0.54 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.12 1.68 4.19 -67.47 -0.28 1.39 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.59 7.15 -51.93 -0.37 1.22 16 43 H 0.02 0.49 6.14 -51.93 -0.32 0.17 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.13 6.85 -40.82 -0.28 9.85 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.94 6.29 -51.93 -0.33 0.61 16 50 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -33.93 401.32 -10.51 -44.44 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -9.96 Total: 6.56 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.07 Total: -3.83 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.41 Total: -61.37 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.93 -10.51 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184911411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.194 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds